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Motivated by an application from geodesy, we introduce a novel clustering problem which is a $k$-center (or k-diameter) problem with a side constraint. For the side constraint, we are given an undirected connectivity graph $G$ on the input points, and a clustering is now only feasible if every cluster induces a connected subgraph in $G$. We call the resulting problems the connected $k$-center problem and the connected $k$-diameter problem. We prove several results on the complexity and approximability of these problems. Our main result is an $O(\log^2{k})$-approximation algorithm for the connected $k$-center and the connected $k$-diameter problem. For Euclidean metrics and metrics with constant doubling dimension, the approximation factor of this algorithm improves to $O(1)$. We also consider the special cases that the connectivity graph is a line or a tree. For the line we give optimal polynomial-time algorithms and for the case that the connectivity graph is a tree, we either give an optimal polynomial-time algorithm or a $2$-approximation algorithm for all variants of our model. We complement our upper bounds by several lower bounds.

Training and inference with graph neural networks (GNNs) on massive graphs has been actively studied since the inception of GNNs, owing to the widespread use and success of GNNs in applications such as recommendation systems and financial forensics. This paper is concerned with minibatch training and inference with GNNs that employ node-wise sampling in distributed settings, where the necessary partitioning of vertex features across distributed storage causes feature communication to become a major bottleneck that hampers scalability. To significantly reduce the communication volume without compromising prediction accuracy, we propose a policy for caching data associated with frequently accessed vertices in remote partitions. The proposed policy is based on an analysis of vertex-wise inclusion probabilities (VIP) during multi-hop neighborhood sampling, which may expand the neighborhood far beyond the partition boundaries of the graph. VIP analysis not only enables the elimination of the communication bottleneck, but it also offers a means to organize in-memory data by prioritizing GPU storage for the most frequently accessed vertex features. We present SALIENT++, which extends the prior state-of-the-art SALIENT system to work with partitioned feature data and leverages the VIP-driven caching policy. SALIENT++ retains the local training efficiency and scalability of SALIENT by using a deep pipeline and drastically reducing communication volume while consuming only a fraction of the storage required by SALIENT. We provide experimental results with the Open Graph Benchmark data sets and demonstrate that training a 3-layer GraphSAGE model with SALIENT++ on 8 single-GPU machines is 7.1 faster than with SALIENT on 1 single-GPU machine, and 12.7 faster than with DistDGL on 8 single-GPU machines.

Data in many real-world applications are often accumulated over time, like a stream. In contrast to conventional machine learning studies that focus on learning from a given training data set, learning from data streams cannot ignore the fact that the incoming data stream can be potentially endless with overwhelming size and unknown changes, and it is impractical to assume to have sufficient computational/storage resource such that all received data can be handled in time. Thus, the generalization performance of learning from data streams depends not only on how many data have been received, but also on how many data can be well exploited timely, with resource and rapidity concerns, in addition to the ability of learning algorithm and complexity of the problem. For this purpose, in this article we introduce the notion of machine learning throughput, define Stream Efficient Learning and present a preliminary theoretical framework.

Our work concerns algorithms for an unweighted variant of Maximum Flow. In the All-Pairs Connectivity (APC) problem, we are given a graph $G$ on $n$ vertices and $m$ edges, and are tasked with computing the maximum number of edge-disjoint paths from $s$ to $t$ (equivalently, the size of a minimum $(s,t)$-cut) in $G$, for all pairs of vertices $(s,t)$. Although over undirected graphs APC can be solved in essentially optimal $n^{2+o(1)}$ time, the true time complexity of APC over directed graphs remains open: this problem can be solved in $\tilde{O}(m^\omega)$ time, where $\omega \in [2, 2.373)$ is the exponent of matrix multiplication, but no matching conditional lower bound is known. We study a variant of APC called the $k$-Bounded All Pairs Connectivity ($k$-APC) problem. In this problem, we are given an integer $k$ and graph $G$, and are tasked with reporting the size of a minimum $(s,t)$-cut only for pairs $(s,t)$ of vertices with a minimum cut size less than $k$ (if the minimum $(s,t)$-cut has size at least $k$, we just report it is "large" instead of computing the exact value). We present an algorithm solving $k$-APC in directed graphs in $\tilde{O}((kn)^\omega)$ time. This runtime is $\tilde O(n^\omega)$ for all $k$ polylogarithmic in $n$, which is essentially optimal under popular conjectures from fine-grained complexity. Previously, this runtime was only known for $k\le 2$ [Georgiadis et al., ICALP 2017]. We also study a variant of $k$-APC, the $k$-Bounded All-Pairs Vertex Connectivity ($k$-APVC) problem, which considers internally vertex-disjoint paths instead of edge-disjoint paths. We present an algorithm solving $k$-APVC in directed graphs in $\tilde{O}(k^2n^\omega)$ time. Previous work solved an easier version of the $k$-APVC problem in $\tilde O((kn)^\omega)$ time [Abboud et al, ICALP 2019].

Decision trees and systems of decision rules are widely used as classifiers, as a means for knowledge representation, and as algorithms. They are among the most interpretable models for data analysis. The study of the relationships between these two models can be seen as an important task of computer science. Methods for transforming decision trees into systems of decision rules are simple and well-known. In this paper, we consider the inverse transformation problem, which is not trivial. We study the complexity of constructing decision trees and acyclic decision graphs representing decision trees from decision rule systems, and we discuss the possibility of not building the entire decision tree, but describing the computation path in this tree for the given input.

We consider the problem of discovering $K$ related Gaussian directed acyclic graphs (DAGs), where the involved graph structures share a consistent causal order and sparse unions of supports. Under the multi-task learning setting, we propose a $l_1/l_2$-regularized maximum likelihood estimator (MLE) for learning $K$ linear structural equation models. We theoretically show that the joint estimator, by leveraging data across related tasks, can achieve a better sample complexity for recovering the causal order (or topological order) than separate estimations. Moreover, the joint estimator is able to recover non-identifiable DAGs, by estimating them together with some identifiable DAGs. Lastly, our analysis also shows the consistency of union support recovery of the structures. To allow practical implementation, we design a continuous optimization problem whose optimizer is the same as the joint estimator and can be approximated efficiently by an iterative algorithm. We validate the theoretical analysis and the effectiveness of the joint estimator in experiments.

Deep learning methods for graphs achieve remarkable performance on many node-level and graph-level prediction tasks. However, despite the proliferation of the methods and their success, prevailing Graph Neural Networks (GNNs) neglect subgraphs, rendering subgraph prediction tasks challenging to tackle in many impactful applications. Further, subgraph prediction tasks present several unique challenges, because subgraphs can have non-trivial internal topology, but also carry a notion of position and external connectivity information relative to the underlying graph in which they exist. Here, we introduce SUB-GNN, a subgraph neural network to learn disentangled subgraph representations. In particular, we propose a novel subgraph routing mechanism that propagates neural messages between the subgraph's components and randomly sampled anchor patches from the underlying graph, yielding highly accurate subgraph representations. SUB-GNN specifies three channels, each designed to capture a distinct aspect of subgraph structure, and we provide empirical evidence that the channels encode their intended properties. We design a series of new synthetic and real-world subgraph datasets. Empirical results for subgraph classification on eight datasets show that SUB-GNN achieves considerable performance gains, outperforming strong baseline methods, including node-level and graph-level GNNs, by 12.4% over the strongest baseline. SUB-GNN performs exceptionally well on challenging biomedical datasets when subgraphs have complex topology and even comprise multiple disconnected components.

Knowledge graph (KG) embedding encodes the entities and relations from a KG into low-dimensional vector spaces to support various applications such as KG completion, question answering, and recommender systems. In real world, knowledge graphs (KGs) are dynamic and evolve over time with addition or deletion of triples. However, most existing models focus on embedding static KGs while neglecting dynamics. To adapt to the changes in a KG, these models need to be re-trained on the whole KG with a high time cost. In this paper, to tackle the aforementioned problem, we propose a new context-aware Dynamic Knowledge Graph Embedding (DKGE) method which supports the embedding learning in an online fashion. DKGE introduces two different representations (i.e., knowledge embedding and contextual element embedding) for each entity and each relation, in the joint modeling of entities and relations as well as their contexts, by employing two attentive graph convolutional networks, a gate strategy, and translation operations. This effectively helps limit the impacts of a KG update in certain regions, not in the entire graph, so that DKGE can rapidly acquire the updated KG embedding by a proposed online learning algorithm. Furthermore, DKGE can also learn KG embedding from scratch. Experiments on the tasks of link prediction and question answering in a dynamic environment demonstrate the effectiveness and efficiency of DKGE.

Graph convolutional network (GCN) has been successfully applied to many graph-based applications; however, training a large-scale GCN remains challenging. Current SGD-based algorithms suffer from either a high computational cost that exponentially grows with number of GCN layers, or a large space requirement for keeping the entire graph and the embedding of each node in memory. In this paper, we propose Cluster-GCN, a novel GCN algorithm that is suitable for SGD-based training by exploiting the graph clustering structure. Cluster-GCN works as the following: at each step, it samples a block of nodes that associate with a dense subgraph identified by a graph clustering algorithm, and restricts the neighborhood search within this subgraph. This simple but effective strategy leads to significantly improved memory and computational efficiency while being able to achieve comparable test accuracy with previous algorithms. To test the scalability of our algorithm, we create a new Amazon2M data with 2 million nodes and 61 million edges which is more than 5 times larger than the previous largest publicly available dataset (Reddit). For training a 3-layer GCN on this data, Cluster-GCN is faster than the previous state-of-the-art VR-GCN (1523 seconds vs 1961 seconds) and using much less memory (2.2GB vs 11.2GB). Furthermore, for training 4 layer GCN on this data, our algorithm can finish in around 36 minutes while all the existing GCN training algorithms fail to train due to the out-of-memory issue. Furthermore, Cluster-GCN allows us to train much deeper GCN without much time and memory overhead, which leads to improved prediction accuracy---using a 5-layer Cluster-GCN, we achieve state-of-the-art test F1 score 99.36 on the PPI dataset, while the previous best result was 98.71 by [16]. Our codes are publicly available at //github.com/google-research/google-research/tree/master/cluster_gcn.

Script event prediction requires a model to predict the subsequent event given an existing event context. Previous models based on event pairs or event chains cannot make full use of dense event connections, which may limit their capability of event prediction. To remedy this, we propose constructing an event graph to better utilize the event network information for script event prediction. In particular, we first extract narrative event chains from large quantities of news corpus, and then construct a narrative event evolutionary graph (NEEG) based on the extracted chains. NEEG can be seen as a knowledge base that describes event evolutionary principles and patterns. To solve the inference problem on NEEG, we present a scaled graph neural network (SGNN) to model event interactions and learn better event representations. Instead of computing the representations on the whole graph, SGNN processes only the concerned nodes each time, which makes our model feasible to large-scale graphs. By comparing the similarity between input context event representations and candidate event representations, we can choose the most reasonable subsequent event. Experimental results on widely used New York Times corpus demonstrate that our model significantly outperforms state-of-the-art baseline methods, by using standard multiple choice narrative cloze evaluation.