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Recently, sparse 3D convolutions have changed 3D object detection. Performing on par with the voting-based approaches, 3D CNNs are memory-efficient and scale to large scenes better. However, there is still room for improvement. With a conscious, practice-oriented approach to problem-solving, we analyze the performance of such methods and localize the weaknesses. Applying modifications that resolve the found issues one by one, we end up with TR3D: a fast fully-convolutional 3D object detection model trained end-to-end, that achieves state-of-the-art results on the standard benchmarks, ScanNet v2, SUN RGB-D, and S3DIS. Moreover, to take advantage of both point cloud and RGB inputs, we introduce an early fusion of 2D and 3D features. We employ our fusion module to make conventional 3D object detection methods multimodal and demonstrate an impressive boost in performance. Our model with early feature fusion, which we refer to as TR3D+FF, outperforms existing 3D object detection approaches on the SUN RGB-D dataset. Overall, besides being accurate, both TR3D and TR3D+FF models are lightweight, memory-efficient, and fast, thereby marking another milestone on the way toward real-time 3D object detection. Code is available at //github.com/SamsungLabs/tr3d .

We introduce AMAGO, an in-context Reinforcement Learning (RL) agent that uses sequence models to tackle the challenges of generalization, long-term memory, and meta-learning. Recent works have shown that off-policy learning can make in-context RL with recurrent policies viable. Nonetheless, these approaches require extensive tuning and limit scalability by creating key bottlenecks in agents' memory capacity, planning horizon, and model size. AMAGO revisits and redesigns the off-policy in-context approach to successfully train long-sequence Transformers over entire rollouts in parallel with end-to-end RL. Our agent is uniquely scalable and applicable to a wide range of problems. We demonstrate its strong performance empirically in meta-RL and long-term memory domains. AMAGO's focus on sparse rewards and off-policy data also allows in-context learning to extend to goal-conditioned problems with challenging exploration. When combined with a novel hindsight relabeling scheme, AMAGO can solve a previously difficult category of open-world domains, where agents complete many possible instructions in procedurally generated environments. We evaluate our agent on three goal-conditioned domains and study how its individual improvements connect to create a generalist policy.

Large vision-language models (LVLMs) have demonstrated their incredible capability in image understanding and response generation. However, this rich visual interaction also makes LVLMs vulnerable to adversarial examples. In this paper, we formulate a novel and practical gray-box attack scenario that the adversary can only access the visual encoder of the victim LVLM, without the knowledge of its prompts (which are often proprietary for service providers and not publicly available) and its underlying large language model (LLM). This practical setting poses challenges to the cross-prompt and cross-model transferability of targeted adversarial attack, which aims to confuse the LVLM to output a response that is semantically similar to the attacker's chosen target text. To this end, we propose an instruction-tuned targeted attack (dubbed InstructTA) to deliver the targeted adversarial attack on LVLMs with high transferability. Initially, we utilize a public text-to-image generative model to "reverse" the target response into a target image, and employ GPT-4 to infer a reasonable instruction $\boldsymbol{p}^\prime$ from the target response. We then form a local surrogate model (sharing the same visual encoder with the victim LVLM) to extract instruction-aware features of an adversarial image example and the target image, and minimize the distance between these two features to optimize the adversarial example. To further improve the transferability, we augment the instruction $\boldsymbol{p}^\prime$ with instructions paraphrased from an LLM. Extensive experiments demonstrate the superiority of our proposed method in targeted attack performance and transferability.

Pre-trained large language models have significantly improved code generation. As these models scale up, there is an increasing need for the output to handle more intricate tasks and to be appropriately specialized to particular domains. Here, we target bioinformatics due to the amount of specialized domain knowledge, algorithms, and data operations this discipline requires. We present BioCoder, a benchmark developed to evaluate large language models (LLMs) in generating bioinformatics-specific code. BioCoder spans a broad spectrum of the field and covers cross-file dependencies, class declarations, and global variables. It incorporates 1026 Python functions and 1243 Java methods extracted from GitHub, along with 253 examples from the Rosalind Project, all pertaining to bioinformatics. Using topic modeling we show that overall coverage of the included code is representative of the full spectrum of bioinformatics calculations. BioCoder incorporates a fuzz-testing framework for evaluation. We have applied it to evaluate many models including InCoder, CodeGen, CodeGen2, SantaCoder, StarCoder, StarCoder+, InstructCodeT5+, GPT-3.5, and GPT-4. Furthermore, we finetuned StarCoder, demonstrating how our dataset can effectively enhance the performance of LLMs on our benchmark (by >15% in terms of Pass@K in certain prompt configurations and always >3%). The results highlight two key aspects of successful models: (1) Successful models accommodate a long prompt (> ~2600 tokens) with full context, for functional dependencies. (2) They contain specific domain knowledge of bioinformatics, beyond just general coding knowledge. This is evident from the performance gain of GPT-3.5/4 compared to the smaller models on the benchmark (50% vs up to ~25%). Our dataset, benchmark, Docker images, and scripts required for testing are all available at //github.com/gersteinlab/biocoder.

Deep learning vulnerability detection tools are increasing in popularity and have been shown to be effective. These tools rely on large volume of high quality training data, which are very hard to get. Most of the currently available datasets provide function-level labels, reporting whether a function is vulnerable or not vulnerable. However, for a vulnerability detection to be useful, we need to also know the lines that are relevant to the vulnerability. This paper makes efforts towards developing systematic tools and proposes. ActiveClean to generate the large volume of line-level vulnerability data from commits. That is, in addition to function-level labels, it also reports which lines in the function are likely responsible for vulnerability detection. In the past, static analysis has been applied to clean commits to generate line-level data. Our approach based on active learning, which is easy to use and scalable, provide a complementary approach to static analysis. We designed semantic and syntactic properties from commit lines and use them to train the model. We evaluated our approach on both Java and C datasets processing more than 4.3K commits and 119K commit lines. AcitveClean achieved an F1 score between 70-74. Further, we also show that active learning is effective by using just 400 training data to reach F1 score of 70.23. Using ActiveClean, we generate the line-level labels for the entire FFMpeg project in the Devign dataset, including 5K functions, and also detected incorrect function-level labels. We demonstrated that using our cleaned data, LineVul, a SOTA line-level vulnerability detection tool, detected 70 more vulnerable lines and 18 more vulnerable functions, and improved Top 10 accuracy from 66% to 73%.

With the recent development of generative models, Text-to-3D generations have also seen significant growth. Nonetheless, achieving precise control over 3D generation continues to be an arduous task, as using text to control often leads to missing objects and imprecise locations. Contemporary strategies for enhancing controllability in 3D generation often entail the introduction of additional parameters, such as customized diffusion models. This often induces hardness in adapting to different diffusion models or creating distinct objects. In this paper, we present LucidDreaming as an effective pipeline capable of fine-grained control over 3D generation. It requires only minimal input of 3D bounding boxes, which can be deduced from a simple text prompt using a Large Language Model. Specifically, we propose clipped ray sampling to separately render and optimize objects with user specifications. We also introduce object-centric density blob bias, fostering the separation of generated objects. With individual rendering and optimizing of objects, our method excels not only in controlled content generation from scratch but also within the pre-trained NeRF scenes. In such scenarios, existing generative approaches often disrupt the integrity of the original scene, and current editing methods struggle to synthesize new content in empty spaces. We show that our method exhibits remarkable adaptability across a spectrum of mainstream Score Distillation Sampling-based 3D generation frameworks, and achieves superior alignment of 3D content when compared to baseline approaches. We also provide a dataset of prompts with 3D bounding boxes, benchmarking 3D spatial controllability.

Recent VQA models may tend to rely on language bias as a shortcut and thus fail to sufficiently learn the multi-modal knowledge from both vision and language. In this paper, we investigate how to capture and mitigate language bias in VQA. Motivated by causal effects, we proposed a novel counterfactual inference framework, which enables us to capture the language bias as the direct causal effect of questions on answers and reduce the language bias by subtracting the direct language effect from the total causal effect. Experiments demonstrate that our proposed counterfactual inference framework 1) is general to various VQA backbones and fusion strategies, 2) achieves competitive performance on the language-bias sensitive VQA-CP dataset while performs robustly on the balanced VQA v2 dataset.

We present CoDEx, a set of knowledge graph completion datasets extracted from Wikidata and Wikipedia that improve upon existing knowledge graph completion benchmarks in scope and level of difficulty. In terms of scope, CoDEx comprises three knowledge graphs varying in size and structure, multilingual descriptions of entities and relations, and tens of thousands of hard negative triples that are plausible but verified to be false. To characterize CoDEx, we contribute thorough empirical analyses and benchmarking experiments. First, we analyze each CoDEx dataset in terms of logical relation patterns. Next, we report baseline link prediction and triple classification results on CoDEx for five extensively tuned embedding models. Finally, we differentiate CoDEx from the popular FB15K-237 knowledge graph completion dataset by showing that CoDEx covers more diverse and interpretable content, and is a more difficult link prediction benchmark. Data, code, and pretrained models are available at //bit.ly/2EPbrJs.

With the capability of modeling bidirectional contexts, denoising autoencoding based pretraining like BERT achieves better performance than pretraining approaches based on autoregressive language modeling. However, relying on corrupting the input with masks, BERT neglects dependency between the masked positions and suffers from a pretrain-finetune discrepancy. In light of these pros and cons, we propose XLNet, a generalized autoregressive pretraining method that (1) enables learning bidirectional contexts by maximizing the expected likelihood over all permutations of the factorization order and (2) overcomes the limitations of BERT thanks to its autoregressive formulation. Furthermore, XLNet integrates ideas from Transformer-XL, the state-of-the-art autoregressive model, into pretraining. Empirically, XLNet outperforms BERT on 20 tasks, often by a large margin, and achieves state-of-the-art results on 18 tasks including question answering, natural language inference, sentiment analysis, and document ranking.