The ability to simulate realistic networks based on empirical data is an important task across scientific disciplines, from epidemiology to computer science. Often simulation approaches involve selecting a suitable network generative model such as Erd\"os-R\'enyi or small-world. However, few tools are available to quantify if a particular generative model is suitable for capturing a given network structure or organization. We utilize advances in interpretable machine learning to classify simulated networks by our generative models based on various network attributes, using both primary features and their interactions. Our study underscores the significance of specific network features and their interactions in distinguishing generative models, comprehending complex network structures, and forming real-world networks
Neural network (NN) designed for challenging machine learning tasks is in general a highly nonlinear mapping that contains massive variational parameters. High complexity of NN, if unbounded or unconstrained, might unpredictably cause severe issues including over-fitting, loss of generalization power, and unbearable cost of hardware. In this work, we propose a general compression scheme that significantly reduces the variational parameters of NN by encoding them to deep automatically-differentiable tensor network (ADTN) that contains exponentially-fewer free parameters. Superior compression performance of our scheme is demonstrated on several widely-recognized NN's (FC-2, LeNet-5, AlextNet, ZFNet and VGG-16) and datasets (MNIST, CIFAR-10 and CIFAR-100). For instance, we compress two linear layers in VGG-16 with approximately $10^{7}$ parameters to two ADTN's with just 424 parameters, where the testing accuracy on CIFAR-10 is improved from $90.17 \%$ to $91.74\%$. Our work suggests TN as an exceptionally efficient mathematical structure for representing the variational parameters of NN's, which exhibits superior compressibility over the commonly-used matrices and multi-way arrays.
While analogies are a common way to evaluate word embeddings in NLP, it is also of interest to investigate whether or not analogical reasoning is a task in itself that can be learned. In this paper, we test several ways to learn basic analogical reasoning, specifically focusing on analogies that are more typical of what is used to evaluate analogical reasoning in humans than those in commonly used NLP benchmarks. Our experiments find that models are able to learn analogical reasoning, even with a small amount of data. We additionally compare our models to a dataset with a human baseline, and find that after training, models approach human performance.
We present extended Galerkin neural networks (xGNN), a variational framework for approximating general boundary value problems (BVPs) with error control. The main contributions of this work are (1) a rigorous theory guiding the construction of new weighted least squares variational formulations suitable for use in neural network approximation of general BVPs (2) an ``extended'' feedforward network architecture which incorporates and is even capable of learning singular solution structures, thus greatly improving approximability of singular solutions. Numerical results are presented for several problems including steady Stokes flow around re-entrant corners and in convex corners with Moffatt eddies in order to demonstrate efficacy of the method.
Purpose: Radiologists are tasked with visually scrutinizing large amounts of data produced by 3D volumetric imaging modalities. Small signals can go unnoticed during the 3d search because they are hard to detect in the visual periphery. Recent advances in machine learning and computer vision have led to effective computer-aided detection (CADe) support systems with the potential to mitigate perceptual errors. Approach: Sixteen non-expert observers searched through digital breast tomosynthesis (DBT) phantoms and single cross-sectional slices of the DBT phantoms. The 3D/2D searches occurred with and without a convolutional neural network (CNN)-based CADe support system. The model provided observers with bounding boxes superimposed on the image stimuli while they looked for a small microcalcification signal and a large mass signal. Eye gaze positions were recorded and correlated with changes in the area under the ROC curve (AUC). Results: The CNN-CADe improved the 3D search for the small microcalcification signal (delta AUC = 0.098, p = 0.0002) and the 2D search for the large mass signal (delta AUC = 0.076, p = 0.002). The CNN-CADe benefit in 3D for the small signal was markedly greater than in 2D (delta delta AUC = 0.066, p = 0.035). Analysis of individual differences suggests that those who explored the least with eye movements benefited the most from the CNN-CADe (r = -0.528, p = 0.036). However, for the large signal, the 2D benefit was not significantly greater than the 3D benefit (delta delta AUC = 0.033, p = 0.133). Conclusion: The CNN-CADe brings unique performance benefits to the 3D (vs. 2D) search of small signals by reducing errors caused by the under-exploration of the volumetric data.
The article introduces a method to learn dynamical systems that are governed by Euler--Lagrange equations from data. The method is based on Gaussian process regression and identifies continuous or discrete Lagrangians and is, therefore, structure preserving by design. A rigorous proof of convergence as the distance between observation data points converges to zero is provided. Next to convergence guarantees, the method allows for quantification of model uncertainty, which can provide a basis of adaptive sampling techniques. We provide efficient uncertainty quantification of any observable that is linear in the Lagrangian, including of Hamiltonian functions (energy) and symplectic structures, which is of interest in the context of system identification. The article overcomes major practical and theoretical difficulties related to the ill-posedness of the identification task of (discrete) Lagrangians through a careful design of geometric regularisation strategies and through an exploit of a relation to convex minimisation problems in reproducing kernel Hilbert spaces.
Spiking neural networks (SNNs) inherently rely on the timing of signals for representing and processing information. Transmission delays play an important role in shaping these temporal characteristics. Recent work has demonstrated the substantial advantages of learning these delays along with synaptic weights, both in terms of accuracy and memory efficiency. However, these approaches suffer from drawbacks in terms of precision and efficiency, as they operate in discrete time and with approximate gradients, while also requiring membrane potential recordings for calculating parameter updates. To alleviate these issues, we propose an analytical approach for calculating exact loss gradients with respect to both synaptic weights and delays in an event-based fashion. The inclusion of delays emerges naturally within our proposed formalism, enriching the model's search space with a temporal dimension. Our algorithm is purely based on the timing of individual spikes and does not require access to other variables such as membrane potentials. We explicitly compare the impact on accuracy and parameter efficiency of different types of delays - axonal, dendritic and synaptic. Furthermore, while previous work on learnable delays in SNNs has been mostly confined to software simulations, we demonstrate the functionality and benefits of our approach on the BrainScaleS-2 neuromorphic platform.
We hypothesize that due to the greedy nature of learning in multi-modal deep neural networks, these models tend to rely on just one modality while under-fitting the other modalities. Such behavior is counter-intuitive and hurts the models' generalization, as we observe empirically. To estimate the model's dependence on each modality, we compute the gain on the accuracy when the model has access to it in addition to another modality. We refer to this gain as the conditional utilization rate. In the experiments, we consistently observe an imbalance in conditional utilization rates between modalities, across multiple tasks and architectures. Since conditional utilization rate cannot be computed efficiently during training, we introduce a proxy for it based on the pace at which the model learns from each modality, which we refer to as the conditional learning speed. We propose an algorithm to balance the conditional learning speeds between modalities during training and demonstrate that it indeed addresses the issue of greedy learning. The proposed algorithm improves the model's generalization on three datasets: Colored MNIST, Princeton ModelNet40, and NVIDIA Dynamic Hand Gesture.
Deep learning constitutes a recent, modern technique for image processing and data analysis, with promising results and large potential. As deep learning has been successfully applied in various domains, it has recently entered also the domain of agriculture. In this paper, we perform a survey of 40 research efforts that employ deep learning techniques, applied to various agricultural and food production challenges. We examine the particular agricultural problems under study, the specific models and frameworks employed, the sources, nature and pre-processing of data used, and the overall performance achieved according to the metrics used at each work under study. Moreover, we study comparisons of deep learning with other existing popular techniques, in respect to differences in classification or regression performance. Our findings indicate that deep learning provides high accuracy, outperforming existing commonly used image processing techniques.
Nowadays, the Convolutional Neural Networks (CNNs) have achieved impressive performance on many computer vision related tasks, such as object detection, image recognition, image retrieval, etc. These achievements benefit from the CNNs outstanding capability to learn the input features with deep layers of neuron structures and iterative training process. However, these learned features are hard to identify and interpret from a human vision perspective, causing a lack of understanding of the CNNs internal working mechanism. To improve the CNN interpretability, the CNN visualization is well utilized as a qualitative analysis method, which translates the internal features into visually perceptible patterns. And many CNN visualization works have been proposed in the literature to interpret the CNN in perspectives of network structure, operation, and semantic concept. In this paper, we expect to provide a comprehensive survey of several representative CNN visualization methods, including Activation Maximization, Network Inversion, Deconvolutional Neural Networks (DeconvNet), and Network Dissection based visualization. These methods are presented in terms of motivations, algorithms, and experiment results. Based on these visualization methods, we also discuss their practical applications to demonstrate the significance of the CNN interpretability in areas of network design, optimization, security enhancement, etc.
Recent advances in 3D fully convolutional networks (FCN) have made it feasible to produce dense voxel-wise predictions of volumetric images. In this work, we show that a multi-class 3D FCN trained on manually labeled CT scans of several anatomical structures (ranging from the large organs to thin vessels) can achieve competitive segmentation results, while avoiding the need for handcrafting features or training class-specific models. To this end, we propose a two-stage, coarse-to-fine approach that will first use a 3D FCN to roughly define a candidate region, which will then be used as input to a second 3D FCN. This reduces the number of voxels the second FCN has to classify to ~10% and allows it to focus on more detailed segmentation of the organs and vessels. We utilize training and validation sets consisting of 331 clinical CT images and test our models on a completely unseen data collection acquired at a different hospital that includes 150 CT scans, targeting three anatomical organs (liver, spleen, and pancreas). In challenging organs such as the pancreas, our cascaded approach improves the mean Dice score from 68.5 to 82.2%, achieving the highest reported average score on this dataset. We compare with a 2D FCN method on a separate dataset of 240 CT scans with 18 classes and achieve a significantly higher performance in small organs and vessels. Furthermore, we explore fine-tuning our models to different datasets. Our experiments illustrate the promise and robustness of current 3D FCN based semantic segmentation of medical images, achieving state-of-the-art results. Our code and trained models are available for download: //github.com/holgerroth/3Dunet_abdomen_cascade.