We present a new dataset condensation framework termed Squeeze, Recover and Relabel (SRe$^2$L) that decouples the bilevel optimization of model and synthetic data during training, to handle varying scales of datasets, model architectures and image resolutions for efficient dataset condensation. The proposed method demonstrates flexibility across diverse dataset scales and exhibits multiple advantages in terms of arbitrary resolutions of synthesized images, low training cost and memory consumption with high-resolution synthesis, and the ability to scale up to arbitrary evaluation network architectures. Extensive experiments are conducted on Tiny-ImageNet and full ImageNet-1K datasets. Under 50 IPC, our approach achieves the highest 42.5% and 60.8% validation accuracy on Tiny-ImageNet and ImageNet-1K, outperforming all previous state-of-the-art methods by margins of 14.5% and 32.9%, respectively. Our approach also surpasses MTT in terms of speed by approximately 52$\times$ (ConvNet-4) and 16$\times$ (ResNet-18) faster with less memory consumption of 11.6$\times$ and 6.4$\times$ during data synthesis. Our code and condensed datasets of 50, 200 IPC with 4K recovery budget are available at //github.com/VILA-Lab/SRe2L.
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The year 2023 marked a significant surge in the exploration of applying large language model (LLM) chatbots, notably ChatGPT, across various disciplines. We surveyed the applications of ChatGPT in various sectors of bioinformatics and biomedical informatics throughout the year, covering omics, genetics, biomedical text mining, drug discovery, biomedical image understanding, bioinformatics programming, and bioinformatics education. Our survey delineates the current strengths and limitations of this chatbot in bioinformatics and offers insights into potential avenues for future development.
Core computations in Graph Neural Network (GNN) training and inference are often mapped to sparse matrix operations such as sparse-dense matrix multiplication (SpMM). These sparse operations are harder to optimize by manual tuning because their performance depends significantly on the sparsity of input graphs, GNN models, and computing platforms. To address this challenge, we present iSpLib, a PyTorch-based C++ library equipped with auto-tuned sparse operations. iSpLib expedites GNN training with a cache-enabled backpropagation that stores intermediate matrices in local caches. The library offers a user-friendly Python plug-in that allows users to take advantage of our optimized PyTorch operations out-of-the-box for any existing linear algebra-based PyTorch implementation of popular GNNs (Graph Convolution Network, GraphSAGE, Graph Inference Network, etc.) with only two lines of additional code. We demonstrate that iSpLib obtains up to 27x overall training speedup compared to the equivalent PyTorch 2.1.0 and PyTorch Geometric 2.4.0 implementations on the CPU. Our library is publicly available at //github.com/HipGraph/iSpLib (//doi.org/10.5281/zenodo.10806511).
We introduce $r$-loopy Weisfeiler-Leman ($r$-$\ell{}$WL), a novel hierarchy of graph isomorphism tests and a corresponding GNN framework, $r$-$\ell{}$MPNN, that can count cycles up to length $r + 2$. Most notably, we show that $r$-$\ell{}$WL can count homomorphisms of cactus graphs. This strictly extends classical 1-WL, which can only count homomorphisms of trees and, in fact, is incomparable to $k$-WL for any fixed $k$. We empirically validate the expressive and counting power of the proposed $r$-$\ell{}$MPNN on several synthetic datasets and present state-of-the-art predictive performance on various real-world datasets. The code is available at //github.com/RPaolino/loopy
Network calculus (NC), particularly its min-plus branch, has been extensively utilized to construct service models and compute delay bounds for time-sensitive networks (TSNs). This paper provides a revisit to the fundamental results. In particular, counterexamples to the most basic min-plus service models, which have been proposed for TSNs and used for computing delay bounds, indicate that the packetization effect has often been overlooked. To address, the max-plus branch of NC is also considered in this paper, whose models handle packetized traffic more explicitly. It is found that mapping the min-plus models to the max-plus models may bring in an immediate improvement over delay bounds derived from the min-plus analysis. In addition, an integrated analytical approach that combines models from both the min-plus and the max-plus NC branches is introduced. In this approach, the max-plus $g$-server model is extended and the extended model, called $g^{x}$-server, is used together with the min-plus arrival curve traffic model. By applying the integrated NC approach, service and delay bounds are derived for several settings that are fundamental in TSNs.
We revisit a standard polygon containment problem: given a convex $k$-gon $P$ and a convex $n$-gon $Q$ in the plane, find a placement of $P$ inside $Q$ under translation and rotation (if it exists), or more generally, find the largest copy of $P$ inside $Q$ under translation, rotation, and scaling. Previous algorithms by Chazelle (1983), Sharir and Toledo (1994), and Agarwal, Amenta, and Sharir (1998) all required $\Omega(n^2)$ time, even in the simplest $k=3$ case. We present a significantly faster new algorithm for $k=3$ achieving $O(n$polylog $n)$ running time. Moreover, we extend the result for general $k$, achieving $O(k^{O(1/\varepsilon)}n^{1+\varepsilon})$ running time for any $\varepsilon>0$. Along the way, we also prove a new $O(k^{O(1)}n$polylog $n)$ bound on the number of similar copies of $P$ inside $Q$ that have 4 vertices of $P$ in contact with the boundary of $Q$ (assuming general position input), disproving a conjecture by Agarwal, Amenta, and Sharir (1998).
Transformer-based NLP models are powerful but have high computational costs that limit deployment scenarios. Finetuned encoder-decoder models are popular in specialized domains and can outperform larger more generalized decoder-only models, such as GPT-4. We introduce a new configuration for encoder-decoder models that improves efficiency on structured output and question-answering tasks where multiple outputs are required of a single input. Our method, prompt-in-decoder (PiD), encodes the input once and decodes output in parallel, boosting both training and inference efficiency by avoiding duplicate input encoding, thereby reducing the decoder's memory footprint. We achieve computation reduction that roughly scales with the number of subtasks, gaining up to 4.6x speed-up over state-of-the-art models for dialogue state tracking, summarization, and question-answering tasks with comparable or better performance. We release our training/inference code and checkpoints.
As more than 70$\%$ of reviews in the existing opinion summary data set are positive, current opinion summarization approaches are reluctant to generate negative summaries given the input of negative texts. To address such sentiment bias, a direct approach without the over-reliance on a specific framework is to generate additional data based on large language models to balance the emotional distribution of the dataset. However, data augmentation based on large language models faces two disadvantages: 1) the potential issues or toxicity in the augmented data; 2) the expensive costs. Therefore, in this paper, we propose a novel data augmentation framework based on both large and small language models for debiasing opinion summarization. In specific, a small size of synthesized negative reviews is obtained by rewriting the positive text via a large language model. Then, a disentangle reconstruction model is trained based on the generated data. After training, a large amount of synthetic data can be obtained by decoding the new representation obtained from the combination of different sample representations and filtering based on confusion degree and sentiment classification. Experiments have proved that our framework can effectively alleviate emotional bias same as using only large models, but more economically.
With the increased use of network technologies like Internet of Things (IoT) in many real-world applications, new types of cyberattacks have been emerging. To safeguard critical infrastructures from these emerging threats, it is crucial to deploy an Intrusion Detection System (IDS) that can detect different types of attacks accurately while minimizing false alarms. Machine learning approaches have been used extensively in IDS and they are mainly using flat multi-class classification to differentiate normal traffic and different types of attacks. Though cyberattack types exhibit a hierarchical structure where similar granular attack subtypes can be grouped into more high-level attack types, hierarchical classification approach has not been explored well. In this paper, we investigate the effectiveness of hierarchical classification approach in IDS. We use a three-level hierarchical classification model to classify various network attacks, where the first level classifies benign or attack, the second level classifies coarse high-level attack types, and the third level classifies a granular level attack types. Our empirical results of using 10 different classification algorithms in 10 different datasets show that there is no significant difference in terms of overall classification performance (i.e., detecting normal and different types of attack correctly) of hierarchical and flat classification approaches. However, flat classification approach misclassify attacks as normal whereas hierarchical approach misclassify one type of attack as another attack type. In other words, the hierarchical classification approach significantly minimises attacks from misclassified as normal traffic, which is more important in critical systems.
With the exponential surge in diverse multi-modal data, traditional uni-modal retrieval methods struggle to meet the needs of users demanding access to data from various modalities. To address this, cross-modal retrieval has emerged, enabling interaction across modalities, facilitating semantic matching, and leveraging complementarity and consistency between different modal data. Although prior literature undertook a review of the cross-modal retrieval field, it exhibits numerous deficiencies pertaining to timeliness, taxonomy, and comprehensiveness. This paper conducts a comprehensive review of cross-modal retrieval's evolution, spanning from shallow statistical analysis techniques to vision-language pre-training models. Commencing with a comprehensive taxonomy grounded in machine learning paradigms, mechanisms, and models, the paper then delves deeply into the principles and architectures underpinning existing cross-modal retrieval methods. Furthermore, it offers an overview of widely used benchmarks, metrics, and performances. Lastly, the paper probes the prospects and challenges that confront contemporary cross-modal retrieval, while engaging in a discourse on potential directions for further progress in the field. To facilitate the research on cross-modal retrieval, we develop an open-source code repository at //github.com/BMC-SDNU/Cross-Modal-Retrieval.
We present CoDEx, a set of knowledge graph completion datasets extracted from Wikidata and Wikipedia that improve upon existing knowledge graph completion benchmarks in scope and level of difficulty. In terms of scope, CoDEx comprises three knowledge graphs varying in size and structure, multilingual descriptions of entities and relations, and tens of thousands of hard negative triples that are plausible but verified to be false. To characterize CoDEx, we contribute thorough empirical analyses and benchmarking experiments. First, we analyze each CoDEx dataset in terms of logical relation patterns. Next, we report baseline link prediction and triple classification results on CoDEx for five extensively tuned embedding models. Finally, we differentiate CoDEx from the popular FB15K-237 knowledge graph completion dataset by showing that CoDEx covers more diverse and interpretable content, and is a more difficult link prediction benchmark. Data, code, and pretrained models are available at //bit.ly/2EPbrJs.
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