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During Percutaneous Nephrolithotomy (PCNL) operations, the surgeon is required to define the incision point on the patient's back, align the needle to a pre-planned path, and perform puncture operations afterward. The procedure is currently performed manually using ultrasound or fluoroscopy imaging for needle orientation, which, however, implies limited accuracy and low reproducibility. This work incorporates Augmented Reality (AR) visualization with an optical see-through head-mounted display (OST-HMD) and Human-Robot Collaboration (HRC) framework to empower the surgeon's task completion performance. In detail, Eye-to-Hand calibration, system registration, and hologram model registration are performed to realize visual guidance. A Cartesian impedance controller is used to guide the operator during the needle puncture task execution. Experiments are conducted to verify the system performance compared with conventional manual puncture procedures and a 2D monitor-based visualisation interface. The results showed that the proposed framework achieves the lowest median and standard deviation error across all the experimental groups, respectively. Furthermore, the NASA-TLX user evaluation results indicate that the proposed framework requires the lowest workload score for task completion compared to other experimental setups. The proposed framework exhibits significant potential for clinical application in the PCNL task, as it enhances the surgeon's perception capability, facilitates collision-free needle insertion path planning, and minimises errors in task completion.

Although there have been remarkable advances in dialogue systems through the dialogue systems technology competition (DSTC), it remains one of the key challenges to building a robust task-oriented dialogue system with a speech interface. Most of the progress has been made for text-based dialogue systems since there are abundant datasets with written corpora while those with spoken dialogues are very scarce. However, as can be seen from voice assistant systems such as Siri and Alexa, it is of practical importance to transfer the success to spoken dialogues. In this paper, we describe our engineering effort in building a highly successful model that participated in the speech-aware dialogue systems technology challenge track in DSTC11. Our model consists of three major modules: (1) automatic speech recognition error correction to bridge the gap between the spoken and the text utterances, (2) text-based dialogue system (D3ST) for estimating the slots and values using slot descriptions, and (3) post-processing for recovering the error of the estimated slot value. Our experiments show that it is important to use an explicit automatic speech recognition error correction module, post-processing, and data augmentation to adapt a text-based dialogue state tracker for spoken dialogue corpora.

Despite the potential of diffusion models in speech enhancement, their deployment in Acoustic Echo Cancellation (AEC) has been restricted. In this paper, we propose DI-AEC, pioneering a diffusion-based stochastic regeneration approach dedicated to AEC. Further, we propose FADI-AEC, fast score-based diffusion AEC framework to save computational demands, making it favorable for edge devices. It stands out by running the score model once per frame, achieving a significant surge in processing efficiency. Apart from that, we introduce a novel noise generation technique where far-end signals are utilized, incorporating both far-end and near-end signals to refine the score model's accuracy. We test our proposed method on the ICASSP2023 Microsoft deep echo cancellation challenge evaluation dataset, where our method outperforms some of the end-to-end methods and other diffusion based echo cancellation methods.

DEtection TRansformer (DETR) and its variants (DETRs) have been successfully applied to crowded pedestrian detection, which achieved promising performance. However, we find that, in different degrees of crowded scenes, the number of DETRs' queries must be adjusted manually, otherwise, the performance would degrade to varying degrees. In this paper, we first analyze the two current query generation methods and summarize four guidelines for designing the adaptive query generation method. Then, we propose Rank-based Adaptive Query Generation (RAQG) to alleviate the problem. Specifically, we design a rank prediction head that can predict the rank of the lowest confidence positive training sample produced by the encoder. Based on the predicted rank, we design an adaptive selection method that can adaptively select coarse detection results produced by the encoder to generate queries. Moreover, to train the rank prediction head better, we propose Soft Gradient L1 Loss. The gradient of Soft Gradient L1 Loss is continuous, which can describe the relationship between the loss value and the updated value of model parameters granularly. Our method is simple and effective, which can be plugged into any DETRs to make it query-adaptive in theory. The experimental results on Crowdhuman dataset and Citypersons dataset show that our method can adaptively generate queries for DETRs and achieve competitive results. Especially, our method achieves state-of-the-art 39.4% MR on Crowdhuman dataset.

Bioinformatics and Computational Biology are two fields that have been exploiting GPUs for more than two decades, being CUDA the most used programming language for them. However, as CUDA is an NVIDIA proprietary language, it implies a strong portability restriction to a wide range of heterogeneous architectures, like AMD or Intel GPUs. To face this issue, the Khronos Group has recently proposed the SYCL standard, which is an open, royalty-free, cross-platform abstraction layer, that enables the programming of a heterogeneous system to be written using standard, single-source C++ code. Over the past few years, several implementations of this SYCL standard have emerged, being oneAPI the one from Intel. This paper presents the migration process of the SW\# suite, a biological sequence alignment tool developed in CUDA, to SYCL using Intel's oneAPI ecosystem. The experimental results show that SW\# was completely migrated with a small programmer intervention in terms of hand-coding. In addition, it was possible to port the migrated code between different architectures (considering multiple vendor GPUs and also CPUs), with no noticeable performance degradation on 5 different NVIDIA GPUs. Moreover, performance remained stable when switching to another SYCL implementation. As a consequence, SYCL and its implementations can offer attractive opportunities for the Bioinformatics community, especially considering the vast existence of CUDA-based legacy codes.

The goal of Universal Cross-Domain Retrieval (UCDR) is to achieve robust performance in generalized test scenarios, wherein data may belong to strictly unknown domains and categories during training. Recently, pre-trained models with prompt tuning have shown strong generalization capabilities and attained noteworthy achievements in various downstream tasks, such as few-shot learning and video-text retrieval. However, applying them directly to UCDR may not sufficiently to handle both domain shift (i.e., adapting to unfamiliar domains) and semantic shift (i.e., transferring to unknown categories). To this end, we propose Prompting-to-Simulate (ProS), the first method to apply prompt tuning for UCDR. ProS employs a two-step process to simulate Content-aware Dynamic Prompts (CaDP) which can impact models to produce generalized features for UCDR. Concretely, in Prompt Units Learning stage, we introduce two Prompt Units to individually capture domain and semantic knowledge in a mask-and-align way. Then, in Context-aware Simulator Learning stage, we train a Content-aware Prompt Simulator under a simulated test scenarios to produce the corresponding CaDP. Extensive experiments conducted on three benchmark datasets show that our method achieves new state-of-the-art performance without bringing excessive parameters. Our method is publicly available at //anonymous.4open.science/r/ProS

Advances in Visually Rich Document Understanding (VrDU) have enabled information extraction and question answering over documents with complex layouts. Two tropes of architectures have emerged -- transformer-based models inspired by LLMs, and Graph Neural Networks. In this paper, we introduce DocGraphLM, a novel framework that combines pre-trained language models with graph semantics. To achieve this, we propose 1) a joint encoder architecture to represent documents, and 2) a novel link prediction approach to reconstruct document graphs. DocGraphLM predicts both directions and distances between nodes using a convergent joint loss function that prioritizes neighborhood restoration and downweighs distant node detection. Our experiments on three SotA datasets show consistent improvement on IE and QA tasks with the adoption of graph features. Moreover, we report that adopting the graph features accelerates convergence in the learning process during training, despite being solely constructed through link prediction.

Smart Digital twins (SDTs) are being increasingly used to virtually replicate and predict the behaviors of complex physical systems through continual data assimilation enabling the optimization of the performance of these systems by controlling the actions of systems. Recently, deep learning (DL) models have significantly enhanced the capabilities of SDTs, particularly for tasks such as predictive maintenance, anomaly detection, and optimization. In many domains, including medicine, engineering, and education, SDTs use image data (image-based SDTs) to observe and learn system behaviors and control their behaviors. This paper focuses on various approaches and associated challenges in developing image-based SDTs by continually assimilating image data from physical systems. The paper also discusses the challenges involved in designing and implementing DL models for SDTs, including data acquisition, processing, and interpretation. In addition, insights into the future directions and opportunities for developing new image-based DL approaches to develop robust SDTs are provided. This includes the potential for using generative models for data augmentation, developing multi-modal DL models, and exploring the integration of DL with other technologies, including 5G, edge computing, and IoT. In this paper, we describe the image-based SDTs, which enable broader adoption of the digital twin DT paradigms across a broad spectrum of areas and the development of new methods to improve the abilities of SDTs in replicating, predicting, and optimizing the behavior of complex systems.

Object detectors usually achieve promising results with the supervision of complete instance annotations. However, their performance is far from satisfactory with sparse instance annotations. Most existing methods for sparsely annotated object detection either re-weight the loss of hard negative samples or convert the unlabeled instances into ignored regions to reduce the interference of false negatives. We argue that these strategies are insufficient since they can at most alleviate the negative effect caused by missing annotations. In this paper, we propose a simple but effective mechanism, called Co-mining, for sparsely annotated object detection. In our Co-mining, two branches of a Siamese network predict the pseudo-label sets for each other. To enhance multi-view learning and better mine unlabeled instances, the original image and corresponding augmented image are used as the inputs of two branches of the Siamese network, respectively. Co-mining can serve as a general training mechanism applied to most of modern object detectors. Experiments are performed on MS COCO dataset with three different sparsely annotated settings using two typical frameworks: anchor-based detector RetinaNet and anchor-free detector FCOS. Experimental results show that our Co-mining with RetinaNet achieves 1.4%~2.1% improvements compared with different baselines and surpasses existing methods under the same sparsely annotated setting.

In Multi-Label Text Classification (MLTC), one sample can belong to more than one class. It is observed that most MLTC tasks, there are dependencies or correlations among labels. Existing methods tend to ignore the relationship among labels. In this paper, a graph attention network-based model is proposed to capture the attentive dependency structure among the labels. The graph attention network uses a feature matrix and a correlation matrix to capture and explore the crucial dependencies between the labels and generate classifiers for the task. The generated classifiers are applied to sentence feature vectors obtained from the text feature extraction network (BiLSTM) to enable end-to-end training. Attention allows the system to assign different weights to neighbor nodes per label, thus allowing it to learn the dependencies among labels implicitly. The results of the proposed model are validated on five real-world MLTC datasets. The proposed model achieves similar or better performance compared to the previous state-of-the-art models.