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Due to convenience, open-source software is widely used. For beneficial reasons, open-source maintainers often fix the vulnerabilities silently, exposing their users unaware of the updates to threats. Previous works all focus on black-box binary detection of the silent dependency alerts that suffer from high false-positive rates. Open-source software users need to analyze and explain AI prediction themselves. Explainable AI becomes remarkable as a complementary of black-box AI models, providing details in various forms to explain AI decisions. Noticing there is still no technique that can discover silent dependency alert on time, in this work, we propose a framework using an encoder-decoder model with a binary detector to provide explainable silent dependency alert prediction. Our model generates 4 types of vulnerability key aspects including vulnerability type, root cause, attack vector, and impact to enhance the trustworthiness and users' acceptance to alert prediction. By experiments with several models and inputs, we confirm CodeBERT with both commit messages and code changes achieves the best results. Our user study shows that explainable alert predictions can help users find silent dependency alert more easily than black-box predictions. To the best of our knowledge, this is the first research work on the application of Explainable AI in silent dependency alert prediction, which opens the door of the related domains.

In many experiment-driven scientific domains, such as high-energy physics, material science, and cosmology, high data rate experiments impose hard constraints on data acquisition systems: collected data must either be indiscriminately stored for post-processing and analysis, thereby necessitating large storage capacity, or accurately filtered in real-time, thereby necessitating low-latency processing. Deep neural networks, effective in other filtering tasks, have not been widely employed in such data acquisition systems, due to design and deployment difficulties. We present an open source, lightweight, compiler framework, without any proprietary dependencies, OpenHLS, based on high-level synthesis techniques, for translating high-level representations of deep neural networks to low-level representations, suitable for deployment to near-sensor devices such as field-programmable gate arrays. We evaluate OpenHLS on various workloads and present a case-study implementation of a deep neural network for Bragg peak detection in the context of high-energy diffraction microscopy. We show OpenHLS is able to produce an implementation of the network with a throughput 4.8 $\mu$s/sample, which is approximately a 4$\times$ improvement over the existing implementation

Large Language Models (LLMs) have been reported to have strong performance on natural language processing tasks. However, performance metrics such as accuracy do not measure the quality of the model in terms of its ability to robustly represent complex linguistic structure. In this paper, focusing on the ability of language models to represent syntax, we propose a framework to assess the consistency and robustness of linguistic representations. To this end, we introduce measures of robustness of neural network models that leverage recent advances in extracting linguistic constructs from LLMs via probing tasks, i.e., simple tasks used to extract meaningful information about a single facet of a language model, such as syntax reconstruction and root identification. Empirically, we study the performance of four LLMs across six different corpora on the proposed robustness measures by analysing their performance and robustness with respect to syntax-preserving perturbations. We provide evidence that context-free representation (e.g., GloVe) are in some cases competitive with context-dependent representations from modern LLMs (e.g., BERT), yet equally brittle to syntax-preserving perturbations. Our key observation is that emergent syntactic representations in neural networks are brittle. We make the code, trained models and logs available to the community as a contribution to the debate about the capabilities of LLMs.

There is a recent growing interest in applying Deep Learning techniques to tabular data, in order to replicate the success of other Artificial Intelligence areas in this structured domain. Specifically interesting is the case in which tabular data have a time dependence, such as, for instance financial transactions. However, the heterogeneity of the tabular values, in which categorical elements are mixed with numerical items, makes this adaptation difficult. In this paper we propose a Transformer architecture to represent heterogeneous time-dependent tabular data, in which numerical features are represented using a set of frequency functions and the whole network is uniformly trained with a unique loss function.

Traceability systems are important for solving problems due to the increasing scale of the global supply chain, such as food safety crises and market disorder. Blockchain, as an immutable and decentralized ledger, is able to optimize the traditional traceability system by ensuring the transparency and reliability of the system data. However, the use of blockchain technology may lead to a rapid increase in the complexity of system design and development. It is challenging to address widespread and complicated business, changeable processes, and massive data in practice, which are the main factors restricting the wide application of a blockchain-based traceability system (BTS). Therefore, in this paper, we reviewed relevant studies and proposed a reference architecture for BTSs. The proposed reference architecture can improve the cohesiveness, maintainability, and extensibility of BTSs through domain-driven design (DDD) and microservices. Considering the efficiency reduction caused by massive data and complicated data structure, we further changed the traditional single blockchain framework into multiple sub-chain networks, which could improve development efficiency and system performance. With the guidance of the architecture trade-off analysis method (ATAM), we evaluated our reference architecture and implemented a prototype in the salmon supply chain scenario. The results show that our solution is effective and adaptable to meet the requirements of BTSs.

Large language models (LMs) are increasingly pretrained on massive corpora of open-source programs and applied to solve program synthesis tasks. However, a fundamental limitation of LMs is their unawareness of security and vulnerability during pretraining and inference. As a result, LMs produce secure or vulnerable programs with high uncertainty (e.g., around 60%/40% chances for GitHub Copilot according to a recent study). This greatly impairs LMs' usability, especially in security-sensitive scenarios. To address this limitation, this work formulates a new problem called controlled code generation, which allows users to input a boolean property into an LM to control if the LM generates secure or vulnerable code. We propose svGen, an effective and lightweight learning approach for solving controlled code generation. svGen leverages property-specific continuous vectors to steer program generation toward the given property, without altering the weights of the LM. svGen's training optimizes those continuous vectors by carefully applying specialized loss terms on different regions of code. Our extensive evaluation shows that svGen achieves strong control capability across various software vulnerabilities and LMs of different parameter sizes. For example, on 9 dangerous vulnerabilities, a state-of-the-art CodeGen LM with 2.7B parameters generates secure programs with a 57% chance. When we use svGen to control the LM to generate secure (resp., vulnerable) programs, the chance is significantly increased to 82% (resp., decreased to 35%).

This paper proposes a flexible framework for inferring large-scale time-varying and time-lagged correlation networks from multivariate or high-dimensional non-stationary time series with piecewise smooth trends. Built on a novel and unified multiple-testing procedure of time-lagged cross-correlation functions with a fixed or diverging number of lags, our method can accurately disclose flexible time-varying network structures associated with complex functional structures at all time points. We broaden the applicability of our method to the structure breaks by developing difference-based nonparametric estimators of cross-correlations, achieve accurate family-wise error control via a bootstrap-assisted procedure adaptive to the complex temporal dynamics, and enhance the probability of recovering the time-varying network structures using a new uniform variance reduction technique. We prove the asymptotic validity of the proposed method and demonstrate its effectiveness in finite samples through simulation studies and empirical applications.

The accurate and interpretable prediction of future events in time-series data often requires the capturing of representative patterns (or referred to as states) underpinning the observed data. To this end, most existing studies focus on the representation and recognition of states, but ignore the changing transitional relations among them. In this paper, we present evolutionary state graph, a dynamic graph structure designed to systematically represent the evolving relations (edges) among states (nodes) along time. We conduct analysis on the dynamic graphs constructed from the time-series data and show that changes on the graph structures (e.g., edges connecting certain state nodes) can inform the occurrences of events (i.e., time-series fluctuation). Inspired by this, we propose a novel graph neural network model, Evolutionary State Graph Network (EvoNet), to encode the evolutionary state graph for accurate and interpretable time-series event prediction. Specifically, Evolutionary State Graph Network models both the node-level (state-to-state) and graph-level (segment-to-segment) propagation, and captures the node-graph (state-to-segment) interactions over time. Experimental results based on five real-world datasets show that our approach not only achieves clear improvements compared with 11 baselines, but also provides more insights towards explaining the results of event predictions.

Graph neural networks (GNNs) are a popular class of machine learning models whose major advantage is their ability to incorporate a sparse and discrete dependency structure between data points. Unfortunately, GNNs can only be used when such a graph-structure is available. In practice, however, real-world graphs are often noisy and incomplete or might not be available at all. With this work, we propose to jointly learn the graph structure and the parameters of graph convolutional networks (GCNs) by approximately solving a bilevel program that learns a discrete probability distribution on the edges of the graph. This allows one to apply GCNs not only in scenarios where the given graph is incomplete or corrupted but also in those where a graph is not available. We conduct a series of experiments that analyze the behavior of the proposed method and demonstrate that it outperforms related methods by a significant margin.

With the rapid increase of large-scale, real-world datasets, it becomes critical to address the problem of long-tailed data distribution (i.e., a few classes account for most of the data, while most classes are under-represented). Existing solutions typically adopt class re-balancing strategies such as re-sampling and re-weighting based on the number of observations for each class. In this work, we argue that as the number of samples increases, the additional benefit of a newly added data point will diminish. We introduce a novel theoretical framework to measure data overlap by associating with each sample a small neighboring region rather than a single point. The effective number of samples is defined as the volume of samples and can be calculated by a simple formula $(1-\beta^{n})/(1-\beta)$, where $n$ is the number of samples and $\beta \in [0,1)$ is a hyperparameter. We design a re-weighting scheme that uses the effective number of samples for each class to re-balance the loss, thereby yielding a class-balanced loss. Comprehensive experiments are conducted on artificially induced long-tailed CIFAR datasets and large-scale datasets including ImageNet and iNaturalist. Our results show that when trained with the proposed class-balanced loss, the network is able to achieve significant performance gains on long-tailed datasets.