Tumour-infiltrating lymphocytes (TILs) are considered as a valuable prognostic markers in both triple-negative and human epidermal growth factor receptor 2 (HER2) breast cancer. In this study, we introduce an innovative deep learning pipeline based on the Efficient-UNet architecture to compute a TILs score for breast cancer whole slide images. Our pipeline first segments tumour-stroma regions and generates a tumour bulk mask. Subsequently, it detects TILs within the tumour-associated stroma, generating a TILs score by closely mirroring the pathologist's workflow. Our method exhibits state-of-the-art performance in segmenting tumour/stroma areas and TILs detection, as demonstrated by internal cross-validation on the TiGER Challenge training dataset and evaluation on the final leaderboards. Additionally, our TILs score proves competitive in predicting survival outcomes within the same challenge, underscoring the clinical relevance and potential of our automated TILs scoring system as a breast cancer prognostic tool.
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Multi-class colorectal tissue classification is a challenging problem that is typically addressed in a setting, where it is assumed that ample amounts of training data is available. However, manual annotation of fine-grained colorectal tissue samples of multiple classes, especially the rare ones like stromal tumor and anal cancer is laborious and expensive. To address this, we propose a knowledge distillation-based approach, named KD-CTCNet, that effectively captures local texture information from few tissue samples, through a distillation loss, to improve the standard CNN features. The resulting enriched feature representation achieves improved classification performance specifically in low data regimes. Extensive experiments on two public datasets of colorectal tissues reveal the merits of the proposed contributions, with a consistent gain achieved over different approaches across low data settings. The code and models are publicly available on GitHub.
In robust optimization problems, the magnitude of perturbations is relatively small. Consequently, solutions within certain regions are less likely to represent the robust optima when perturbations are introduced. Hence, a more efficient search process would benefit from increased opportunities to explore promising regions where global optima or good local optima are situated. In this paper, we introduce a novel robust evolutionary algorithm named the dual-stage robust evolutionary algorithm (DREA) aimed at discovering robust solutions. DREA operates in two stages: the peak-detection stage and the robust solution-searching stage. The primary objective of the peak-detection stage is to identify peaks in the fitness landscape of the original optimization problem. Conversely, the robust solution-searching stage focuses on swiftly identifying the robust optimal solution using information obtained from the peaks discovered in the initial stage. These two stages collectively enable the proposed DREA to efficiently obtain the robust optimal solution for the optimization problem. This approach achieves a balance between solution optimality and robustness by separating the search processes for optimal and robust optimal solutions. Experimental results demonstrate that DREA significantly outperforms five state-of-the-art algorithms across 18 test problems characterized by diverse complexities. Moreover, when evaluated on higher-dimensional robust optimization problems (100-$D$ and 200-$D$), DREA also demonstrates superior performance compared to all five counterpart algorithms.
Detection of small, undetermined moving objects or objects in an occluded environment with a cluttered background is the main problem of computer vision. This greatly affects the detection accuracy of deep learning models. To overcome these problems, we concentrate on deep learning models for real-time detection of cars and tanks in an occluded environment with a cluttered background employing SSD and YOLO algorithms and improved precision of detection and reduce problems faced by these models. The developed method makes the custom dataset and employs a preprocessing technique to clean the noisy dataset. For training the developed model we apply the data augmentation technique to balance and diversify the data. We fine-tuned, trained, and evaluated these models on the established dataset by applying these techniques and highlighting the results we got more accurately than without applying these techniques. The accuracy and frame per second of the SSD-Mobilenet v2 model are higher than YOLO V3 and YOLO V4. Furthermore, by employing various techniques like data enhancement, noise reduction, parameter optimization, and model fusion we improve the effectiveness of detection and recognition. We further added a counting algorithm, and target attributes experimental comparison, and made a graphical user interface system for the developed model with features of object counting, alerts, status, resolution, and frame per second. Subsequently, to justify the importance of the developed method analysis of YOLO V3, V4, and SSD were incorporated. Which resulted in the overall completion of the proposed method.
Scientists are adopting new approaches to scale up their activities and goals. Progress in neurotechnologies, artificial intelligence, automation, and tools for collaboration promises new bursts of discoveries. However, compared to other disciplines and the industry, neuroscience laboratories have been slow to adopt key technologies to support collaboration, reproducibility, and automation. Drawing on progress in other fields, we define a roadmap for implementing automated research workflows for diverse research teams. We propose establishing a five-level capability maturity model for operations in neuroscience research. Achieving higher levels of operational maturity requires new technology-enabled methodologies, which we describe as ``SciOps''. The maturity model provides guidelines for evaluating and upgrading operations in multidisciplinary neuroscience teams.
Background: Accurate volumetric assessment of spontaneous subarachnoid hemorrhage (SAH) is a labor-intensive task performed with current manual and semiautomatic methods that might be relevant for its clinical and prognostic implications. In the present research, we sought to develop and validate an artificial intelligence-driven, fully automated blood segmentation tool for SAH patients via noncontrast computed tomography (NCCT) scans employing a transformer-based Swin UNETR architecture. Methods: We retrospectively analyzed NCCT scans from patients with confirmed aneurysmal subarachnoid hemorrhage (aSAH) utilizing the Swin UNETR for segmentation. The performance of the proposed method was evaluated against manually segmented ground truth data using metrics such as Dice score, intersection over union (IoU), the volumetric similarity index (VSI), the symmetric average surface distance (SASD), and sensitivity and specificity. A validation cohort from an external institution was included to test the generalizability of the model. Results: The model demonstrated high accuracy with robust performance metrics across the internal and external validation cohorts. Notably, it achieved high Dice coefficient (0.873), IoU (0.810), VSI (0.840), sensitivity (0.821) and specificity (0.996) values and a low SASD (1.866), suggesting proficiency in segmenting blood in SAH patients. The model's efficiency was reflected in its processing speed, indicating potential for real-time applications. Conclusions: Our Swin UNETR-based model offers significant advances in the automated segmentation of blood after aSAH on NCCT images. Despite the computational intensity, the model operates effectively on standard hardware with a user-friendly interface, facilitating broader clinical adoption. Further validation across diverse datasets is warranted to confirm its clinical reliability.
We introduce a new approach for identifying and characterizing voids within two-dimensional (2D) point distributions through the integration of Delaunay triangulation and Voronoi diagrams, combined with a Minimal Distance Scoring algorithm. Our methodology initiates with the computational determination of the Convex Hull vertices within the point cloud, followed by a systematic selection of optimal line segments, strategically chosen for their likelihood of intersecting internal void regions. We then utilize Delaunay triangulation in conjunction with Voronoi diagrams to ascertain the initial points for the construction of the maximal internal curve envelope by adopting a pseudo-recursive approach for higher-order void identification. In each iteration, the existing collection of maximal internal curve envelope points serves as a basis for identifying additional candidate points. This iterative process is inherently self-converging, ensuring progressive refinement of the void's shape with each successive computation cycle. The mathematical robustness of this method allows for an efficient convergence to a stable solution, reflecting both the geometric intricacies and the topological characteristics of the voids within the point cloud. Our findings introduce a method that aims to balance geometric accuracy with computational practicality. The approach is designed to improve the understanding of void shapes within point clouds and suggests a potential framework for exploring more complex, multi-dimensional data analysis.
Domain generalization focuses on leveraging knowledge from multiple related domains with ample training data and labels to enhance inference on unseen in-distribution (IN) and out-of-distribution (OOD) domains. In our study, we introduce a two-phase representation learning technique using multi-task learning. This approach aims to cultivate a latent space from features spanning multiple domains, encompassing both native and cross-domains, to amplify generalization to IN and OOD territories. Additionally, we attempt to disentangle the latent space by minimizing the mutual information between the prior and latent space, effectively de-correlating spurious feature correlations. Collectively, the joint optimization will facilitate domain-invariant feature learning. We assess the model's efficacy across multiple cybersecurity datasets, using standard classification metrics on both unseen IN and OOD sets, and juxtapose the results with contemporary domain generalization methods.
Named entity recognition (NER) is the task to identify text spans that mention named entities, and to classify them into predefined categories such as person, location, organization etc. NER serves as the basis for a variety of natural language applications such as question answering, text summarization, and machine translation. Although early NER systems are successful in producing decent recognition accuracy, they often require much human effort in carefully designing rules or features. In recent years, deep learning, empowered by continuous real-valued vector representations and semantic composition through nonlinear processing, has been employed in NER systems, yielding stat-of-the-art performance. In this paper, we provide a comprehensive review on existing deep learning techniques for NER. We first introduce NER resources, including tagged NER corpora and off-the-shelf NER tools. Then, we systematically categorize existing works based on a taxonomy along three axes: distributed representations for input, context encoder, and tag decoder. Next, we survey the most representative methods for recent applied techniques of deep learning in new NER problem settings and applications. Finally, we present readers with the challenges faced by NER systems and outline future directions in this area.
Object tracking is challenging as target objects often undergo drastic appearance changes over time. Recently, adaptive correlation filters have been successfully applied to object tracking. However, tracking algorithms relying on highly adaptive correlation filters are prone to drift due to noisy updates. Moreover, as these algorithms do not maintain long-term memory of target appearance, they cannot recover from tracking failures caused by heavy occlusion or target disappearance in the camera view. In this paper, we propose to learn multiple adaptive correlation filters with both long-term and short-term memory of target appearance for robust object tracking. First, we learn a kernelized correlation filter with an aggressive learning rate for locating target objects precisely. We take into account the appropriate size of surrounding context and the feature representations. Second, we learn a correlation filter over a feature pyramid centered at the estimated target position for predicting scale changes. Third, we learn a complementary correlation filter with a conservative learning rate to maintain long-term memory of target appearance. We use the output responses of this long-term filter to determine if tracking failure occurs. In the case of tracking failures, we apply an incrementally learned detector to recover the target position in a sliding window fashion. Extensive experimental results on large-scale benchmark datasets demonstrate that the proposed algorithm performs favorably against the state-of-the-art methods in terms of efficiency, accuracy, and robustness.
High spectral dimensionality and the shortage of annotations make hyperspectral image (HSI) classification a challenging problem. Recent studies suggest that convolutional neural networks can learn discriminative spatial features, which play a paramount role in HSI interpretation. However, most of these methods ignore the distinctive spectral-spatial characteristic of hyperspectral data. In addition, a large amount of unlabeled data remains an unexploited gold mine for efficient data use. Therefore, we proposed an integration of generative adversarial networks (GANs) and probabilistic graphical models for HSI classification. Specifically, we used a spectral-spatial generator and a discriminator to identify land cover categories of hyperspectral cubes. Moreover, to take advantage of a large amount of unlabeled data, we adopted a conditional random field to refine the preliminary classification results generated by GANs. Experimental results obtained using two commonly studied datasets demonstrate that the proposed framework achieved encouraging classification accuracy using a small number of data for training.
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