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The Fortran programming language continues to dominate the scientific computing community, with many production codes written in the outdated Fortran-77 dialect, yet with many non-standard extensions such as Cray poiters. This creates significant maintenance burden within the community, with tremendous efforts devoted to modernization. However, despite the modern age of advanced compiler frameworks, processing and transforming old Fortran codes remains challenging. In this paper, we present StmtTree, a new Fortran code transformation toolkit to address this issue. StmtTree abstracts the Fortran grammar into statement tree, offering both a low-level representation manipulation API and a high-level, easy-to-use query and manipulation mini-language. StmtTree simplifies the creation of customized Fortran transformation tools. Experiments show that StmtTree adapts well to legacy Fortran-77 codes, and complex tools such as removing unused statements can be developed with fewer than 100 lines of python code.

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To solve ever more complex problems, Deep Neural Networks are scaled to billions of parameters, leading to huge computational costs. An effective approach to reduce computational requirements and increase efficiency is to prune unnecessary components of these often over-parameterized networks. Previous work has shown that attribution methods from the field of eXplainable AI serve as effective means to extract and prune the least relevant network components in a few-shot fashion. We extend the current state by proposing to explicitly optimize hyperparameters of attribution methods for the task of pruning, and further include transformer-based networks in our analysis. Our approach yields higher model compression rates of large transformer- and convolutional architectures (VGG, ResNet, ViT) compared to previous works, while still attaining high performance on ImageNet classification tasks. Here, our experiments indicate that transformers have a higher degree of over-parameterization compared to convolutional neural networks. Code is available at $\href{//github.com/erfanhatefi/Pruning-by-eXplaining-in-PyTorch}{\text{this https link}}$.

Modern TTS systems are capable of creating highly realistic and natural-sounding speech. Despite these developments, the process of customizing TTS voices remains a complex task, mostly requiring the expertise of specialists within the field. One reason for this is the utilization of deep learning models, which are characterized by their expansive, non-interpretable parameter spaces, restricting the feasibility of manual customization. In this paper, we present a novel human-in-the-loop paradigm based on an evolutionary algorithm for directly interacting with the parameter space of a neural TTS model. We integrated our approach into a user-friendly graphical user interface that allows users to efficiently create original voices. Those voices can then be used with the backbone TTS model, for which we provide a Python API. Further, we present the results of a user study exploring the capabilities of VoiceX. We show that VoiceX is an appropriate tool for creating individual, custom voices.

Code Language Models (CLMs), particularly those leveraging deep learning, have achieved significant success in code intelligence domain. However, the issue of security, particularly backdoor attacks, is often overlooked in this process. The previous research has focused on designing backdoor attacks for CLMs, but effective defenses have not been adequately addressed. In particular, existing defense methods from natural language processing, when directly applied to CLMs, are not effective enough and lack generality, working well in some models and scenarios but failing in others, thus fall short in consistently mitigating backdoor attacks. To bridge this gap, we first confirm the phenomenon of ``early learning" as a general occurrence during the training of CLMs. This phenomenon refers to that a model initially focuses on the main features of training data but may become more sensitive to backdoor triggers over time, leading to overfitting and susceptibility to backdoor attacks. We then analyze that overfitting to backdoor triggers results from the use of the cross-entropy loss function, where the unboundedness of cross-entropy leads the model to increasingly concentrate on the features of the poisoned data. Based on this insight, we propose a general and effective loss function DeCE (Deceptive Cross-Entropy) by blending deceptive distributions and applying label smoothing to limit the gradient to be bounded, which prevents the model from overfitting to backdoor triggers and then enhances the security of CLMs against backdoor attacks. To verify the effectiveness of our defense method, we select code synthesis tasks as our experimental scenarios. Our experiments across various code synthesis datasets, models, and poisoning ratios demonstrate the applicability and effectiveness of DeCE in enhancing the security of CLMs.

With the emergence of large language models (LLMs), LLM-powered multi-agent systems (LLM-MA systems) have been proposed to tackle real-world tasks. However, their agents mostly follow predefined Standard Operating Procedures (SOPs) that remain unchanged across the whole interaction, lacking autonomy and scalability. Additionally, current solutions often overlook the necessity for effective agent cooperation. To address the above limitations, we propose MegaAgent, a practical framework designed for autonomous cooperation in large-scale LLM Agent systems. MegaAgent leverages the autonomy of agents to dynamically generate agents based on task requirements, incorporating features such as automatically dividing tasks, systematic planning and monitoring of agent activities, and managing concurrent operations. In addition, MegaAgent is designed with a hierarchical structure and employs system-level parallelism to enhance performance and boost communication. We demonstrate the effectiveness of MegaAgent through Gobang game development, showing that it outperforms popular LLM-MA systems; and national policy simulation, demonstrating its high autonomy and potential to rapidly scale up to 590 agents while ensuring effective cooperation among them. Our results indicate that MegaAgent is the first autonomous large-scale LLM-MA system with no pre-defined SOPs, high effectiveness and scalability, paving the way for further research in this field. Our code is at //anonymous.4open.science/r/MegaAgent-81F3.

Data augmentation (DA) has been widely leveraged in computer vision to alleviate the data shortage, whereas the DA in medical image analysis (MIA) faces multiple challenges. The prevalent DA approaches in MIA encompass conventional DA, synthetic DA, and automatic DA. However, utilizing these approaches poses various challenges such as experience-driven design and intensive computation cost. Here, we propose an efficient and effective automatic DA method termed MedAugment. We propose a pixel augmentation space and spatial augmentation space and exclude the operations that can break medical details and features, such as severe color distortions or structural alterations that can compromise image diagnostic value. Besides, we propose a novel sampling strategy by sampling a limited number of operations from the two spaces. Moreover, we present a hyperparameter mapping relationship to produce a rational augmentation level and make the MedAugment fully controllable using a single hyperparameter. These configurations settle the differences between natural and medical images, such as high sensitivity to certain attributes such as brightness and posterize. Extensive experimental results on four classification and four segmentation datasets demonstrate the superiority of MedAugment. Compared with existing approaches, the proposed MedAugment serves as a more suitable yet general processing pipeline for medical images without producing color distortions or structural alterations and involving negligible computational overhead. We emphasize that our method can serve as a plugin for arbitrary projects without any extra training stage, thereby holding the potential to make a valuable contribution to the medical field, particularly for medical experts without a solid foundation in deep learning. Code is available at //github.com/NUS-Tim/MedAugment.

We present AuToMATo, a novel parameter-free clustering algorithm based on persistent homology. AuToMATo combines the existing ToMATo clustering algorithm with a bootstrapping procedure in order to separate significant peaks of an estimated density function from non-significant ones. We perform a thorough comparison of AuToMATo against many other state-of-the-art clustering algorithms. We find that not only that AuToMATo compares favorably against other parameter-free clustering algorithms, but in many instances also significantly outperforms even the best selection of parameters for other algorithms. AuToMATo is motivated by applications in topological data analysis, in particular the Mapper algorithm, where it is desirable to work with a parameter-free clustering algorithm. Indeed, we provide evidence that AuToMATo performs well when used with Mapper. Finally, we provide an open-source implementation of AuToMATo in Python that is fully compatible with the standardscikit-learn architecture.

Vision-Language Models (VLMs) building upon the foundation of powerful large language models have made rapid progress in reasoning across visual and textual data. While VLMs perform well on vision tasks that they are trained on, our results highlight key challenges in abstract pattern recognition. We present GlyphPattern, a 954 item dataset that pairs 318 human-written descriptions of visual patterns from 40 writing systems with three visual presentation styles. GlyphPattern evaluates abstract pattern recognition in VLMs, requiring models to understand and judge natural language descriptions of visual patterns. GlyphPattern patterns are drawn from a large-scale cognitive science investigation of human writing systems; as a result, they are rich in spatial reference and compositionality. Our experiments show that GlyphPattern is challenging for state-of-the-art VLMs (GPT-4o achieves only 55% accuracy), with marginal gains from few-shot prompting. Our detailed error analysis reveals challenges at multiple levels, including visual processing, natural language understanding, and pattern generalization.

We present a novel human annotated dataset for evaluating the ability for visual-language models to generate both short and long descriptions for real-world video clips, termed DeVAn (Dense Video Annotation). The dataset contains 8.5K YouTube video clips of 20-60 seconds in duration and covers a wide range of topics and interests. Each video clip is independently annotated by 5 human annotators, producing both captions (1 sentence) and summaries (3-10 sentences). Given any video selected from the dataset and its corresponding ASR information, we evaluate visuallanguage models on either caption or summary generation that is grounded in both the visual and auditory content of the video. Additionally, models are also evaluated on caption- and summary-based retrieval tasks, where the summary-based retrieval task requires the identification of a target video given excerpts of a given summary. Given the novel nature of the paragraph-length video summarization task, we compared different existing evaluation metrics and their alignment with human preferences and found that model-based evaluation metrics provide more semantically-oriented and human-aligned evaluation. Finally, we benchmarked a wide range of current video-language models on DeVAn, and we aim for DeVAn to serve as a useful evaluation set in the age of large language models and complex multi-modal tasks. Code is available at https: //github.com/TK-21st/DeVAn.

To advance deep learning methodologies in the next decade, a theoretical framework for reasoning about modern neural networks is needed. While efforts are increasing toward demystifying why deep learning is so effective, a comprehensive picture remains lacking, suggesting that a better theory is possible. We argue that a future deep learning theory should inherit three characteristics: a \textit{hierarchically} structured network architecture, parameters \textit{iteratively} optimized using stochastic gradient-based methods, and information from the data that evolves \textit{compressively}. As an instantiation, we integrate these characteristics into a graphical model called \textit{neurashed}. This model effectively explains some common empirical patterns in deep learning. In particular, neurashed enables insights into implicit regularization, information bottleneck, and local elasticity. Finally, we discuss how neurashed can guide the development of deep learning theories.

Given the remarkable success that large visual language models (LVLMs) have achieved in image perception tasks, the endeavor to make LVLMs perceive the world like humans is drawing increasing attention. Current multi-modal benchmarks primarily focus on facts or specific topic-related knowledge contained within individual images. However, they often overlook the associative relations between multiple images, which require the identification and analysis of similarities among entities or content present in different images. Therefore, we propose the multi-image relation association task and a meticulously curated Multi-granularity Multi-image Relational Association (MMRA) benchmark, comprising 1,024 samples. In order to systematically and comprehensively evaluate current LVLMs, we establish an associational relation system among images that contain 11 subtasks (e.g, UsageSimilarity, SubEvent) at two granularity levels (i.e., image and entity) according to the relations in ConceptNet. Our experiments reveal that on the MMRA benchmark, current multi-image LVLMs exhibit distinct advantages and disadvantages across various subtasks. Notably, fine-grained, entity-level multi-image perception tasks pose a greater challenge for LVLMs compared to image-level tasks. Moreover, LVLMs perform poorly on spatial-related tasks, indicating that LVLMs still have limited spatial awareness. Additionally, our findings indicate that while LVLMs demonstrate a strong capability to perceive image details, enhancing their ability to associate information across multiple images hinges on improving the reasoning capabilities of their language model component. Moreover, we explored the ability of LVLMs to perceive image sequences within the context of our multi-image association task. Our experiments show that the majority of current LVLMs do not adequately model image sequences during the pre-training process.

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