Graph Laplacian based algorithms for data lying on a manifold have been proven effective for tasks such as dimensionality reduction, clustering, and denoising. In this work, we consider data sets whose data point not only lie on a manifold, but are also closed under the action of a continuous group. An example of such data set is volumes that line on a low dimensional manifold, where each volume may be rotated in three-dimensional space. We introduce the G-invariant graph Laplacian that generalizes the graph Laplacian by accounting for the action of the group on the data set. We show that like the standard graph Laplacian, the G-invariant graph Laplacian converges to the Laplace-Beltrami operator on the data manifold, but with a significantly improved convergence rate. Furthermore, we show that the eigenfunctions of the G-invariant graph Laplacian admit the form of tensor products between the group elements and eigenvectors of certain matrices, which can be computed efficiently using FFT-type algorithms. We demonstrate our construction and its advantages on the problem of filtering data on a noisy manifold closed under the action of the special unitary group SU(2).
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Graph neural networks (GNNs) have shown state-of-the-art performances in various applications. However, GNNs often struggle to capture long-range dependencies in graphs due to oversmoothing. In this paper, we generalize the concept of oversmoothing from undirected to directed graphs. To this aim, we extend the notion of Dirichlet energy by considering a directed symmetrically normalized Laplacian. As vanilla graph convolutional networks are prone to oversmooth, we adopt a neural graph ODE framework. Specifically, we propose fractional graph Laplacian neural ODEs, which describe non-local dynamics. We prove that our approach allows propagating information between distant nodes while maintaining a low probability of long-distance jumps. Moreover, we show that our method is more flexible with respect to the convergence of the graph's Dirichlet energy, thereby mitigating oversmoothing. We conduct extensive experiments on synthetic and real-world graphs, both directed and undirected, demonstrating our method's versatility across diverse graph homophily levels. Our code is available at //github.com/RPaolino/fLode .
The application of machine learning models can be significantly impeded by the occurrence of distributional shifts, as the assumption of homogeneity between the population of training and testing samples in machine learning and statistics may not be feasible in practical situations. One way to tackle this problem is to use invariant learning, such as invariant risk minimization (IRM), to acquire an invariant representation that aids in generalization with distributional shifts. This paper develops methods for obtaining distribution-free prediction regions to describe uncertainty estimates for invariant representations, accounting for the distribution shifts of data from different environments. Our approach involves a weighted conformity score that adapts to the specific environment in which the test sample is situated. We construct an adaptive conformal interval using the weighted conformity score and prove its conditional average under certain conditions. To demonstrate the effectiveness of our approach, we conduct several numerical experiments, including simulation studies and a practical example using real-world data.
We study the computational complexity of counterfactual reasoning in relation to the complexity of associational and interventional reasoning on structural causal models (SCMs). We show that counterfactual reasoning is no harder than associational or interventional reasoning on fully specified SCMs in the context of two computational frameworks. The first framework is based on the notion of treewidth and includes the classical variable elimination and jointree algorithms. The second framework is based on the more recent and refined notion of causal treewidth which is directed towards models with functional dependencies such as SCMs. Our results are constructive and based on bounding the (causal) treewidth of twin networks -- used in standard counterfactual reasoning that contemplates two worlds, real and imaginary -- to the (causal) treewidth of the underlying SCM structure. In particular, we show that the latter (causal) treewidth is no more than twice the former plus one. Hence, if associational or interventional reasoning is tractable on a fully specified SCM then counterfactual reasoning is tractable too. We extend our results to general counterfactual reasoning that requires contemplating more than two worlds and discuss applications of our results to counterfactual reasoning with a partially specified SCM that is coupled with data. We finally present empirical results that measure the gap between the complexities of counterfactual reasoning and associational/interventional reasoning on random SCMs.
Secure multiparty computation (MPC) on incomplete communication networks has been studied within two primary models: (1) Where a partial network is fixed a priori, and thus corruptions can occur dependent on its structure, and (2) Where edges in the communication graph are determined dynamically as part of the protocol. Whereas a rich literature has succeeded in mapping out the feasibility and limitations of graph structures supporting secure computation in the fixed-graph model (including strong classical lower bounds), these bounds do not apply in the latter dynamic-graph setting, which has recently seen exciting new results, but remains relatively unexplored. In this work, we initiate a similar foundational study of MPC within the dynamic-graph model. As a first step, we investigate the property of graph expansion. All existing protocols (implicitly or explicitly) yield communication graphs which are expanders, but it is not clear whether this is inherent. Our results consist of two types (for constant fraction of corruptions): * Upper bounds: We demonstrate secure protocols whose induced communication graphs are not expander graphs, within a wide range of settings (computational, information theoretic, with low locality, even with low locality and adaptive security), each assuming some form of input-independent setup. * Lower bounds: In the plain model (no setup) with adaptive corruptions, we demonstrate that for certain functionalities, no protocol can maintain a non-expanding communication graph against all adversarial strategies. Our lower bound relies only on protocol correctness (not privacy), and requires a surprisingly delicate argument. More generally, we provide a formal framework for analyzing the evolving communication graph of MPC protocols, giving a starting point for studying the relation between secure computation and further, more general graph properties.
Deep graph clustering has recently received significant attention due to its ability to enhance the representation learning capabilities of models in unsupervised scenarios. Nevertheless, deep clustering for temporal graphs, which could capture crucial dynamic interaction information, has not been fully explored. It means that in many clustering-oriented real-world scenarios, temporal graphs can only be processed as static graphs. This not only causes the loss of dynamic information but also triggers huge computational consumption. To solve the problem, we propose a general framework for deep Temporal Graph Clustering called TGC, which adjusts deep clustering techniques (clustering assignment distribution and adjacency matrix reconstruction) to suit the interaction sequence-based batch-processing pattern of temporal graphs. In addition, we discuss differences between temporal graph clustering and existing static graph clustering from several levels. To verify the superiority of the proposed framework TGC, we conduct extensive experiments. The experimental results show that temporal graph clustering enables more flexibility in finding a balance between time and space requirements, and our framework can effectively improve the performance of existing temporal graph learning methods. Our code and supplementary material will be released after publication.
The adaptive processing of structured data is a long-standing research topic in machine learning that investigates how to automatically learn a mapping from a structured input to outputs of various nature. Recently, there has been an increasing interest in the adaptive processing of graphs, which led to the development of different neural network-based methodologies. In this thesis, we take a different route and develop a Bayesian Deep Learning framework for graph learning. The dissertation begins with a review of the principles over which most of the methods in the field are built, followed by a study on graph classification reproducibility issues. We then proceed to bridge the basic ideas of deep learning for graphs with the Bayesian world, by building our deep architectures in an incremental fashion. This framework allows us to consider graphs with discrete and continuous edge features, producing unsupervised embeddings rich enough to reach the state of the art on several classification tasks. Our approach is also amenable to a Bayesian nonparametric extension that automatizes the choice of almost all model's hyper-parameters. Two real-world applications demonstrate the efficacy of deep learning for graphs. The first concerns the prediction of information-theoretic quantities for molecular simulations with supervised neural models. After that, we exploit our Bayesian models to solve a malware-classification task while being robust to intra-procedural code obfuscation techniques. We conclude the dissertation with an attempt to blend the best of the neural and Bayesian worlds together. The resulting hybrid model is able to predict multimodal distributions conditioned on input graphs, with the consequent ability to model stochasticity and uncertainty better than most works. Overall, we aim to provide a Bayesian perspective into the articulated research field of deep learning for graphs.
Clustering is one of the most fundamental and wide-spread techniques in exploratory data analysis. Yet, the basic approach to clustering has not really changed: a practitioner hand-picks a task-specific clustering loss to optimize and fit the given data to reveal the underlying cluster structure. Some types of losses---such as k-means, or its non-linear version: kernelized k-means (centroid based), and DBSCAN (density based)---are popular choices due to their good empirical performance on a range of applications. Although every so often the clustering output using these standard losses fails to reveal the underlying structure, and the practitioner has to custom-design their own variation. In this work we take an intrinsically different approach to clustering: rather than fitting a dataset to a specific clustering loss, we train a recurrent model that learns how to cluster. The model uses as training pairs examples of datasets (as input) and its corresponding cluster identities (as output). By providing multiple types of training datasets as inputs, our model has the ability to generalize well on unseen datasets (new clustering tasks). Our experiments reveal that by training on simple synthetically generated datasets or on existing real datasets, we can achieve better clustering performance on unseen real-world datasets when compared with standard benchmark clustering techniques. Our meta clustering model works well even for small datasets where the usual deep learning models tend to perform worse.
Meta-learning extracts the common knowledge acquired from learning different tasks and uses it for unseen tasks. It demonstrates a clear advantage on tasks that have insufficient training data, e.g., few-shot learning. In most meta-learning methods, tasks are implicitly related via the shared model or optimizer. In this paper, we show that a meta-learner that explicitly relates tasks on a graph describing the relations of their output dimensions (e.g., classes) can significantly improve the performance of few-shot learning. This type of graph is usually free or cheap to obtain but has rarely been explored in previous works. We study the prototype based few-shot classification, in which a prototype is generated for each class, such that the nearest neighbor search between the prototypes produces an accurate classification. We introduce "Gated Propagation Network (GPN)", which learns to propagate messages between prototypes of different classes on the graph, so that learning the prototype of each class benefits from the data of other related classes. In GPN, an attention mechanism is used for the aggregation of messages from neighboring classes, and a gate is deployed to choose between the aggregated messages and the message from the class itself. GPN is trained on a sequence of tasks from many-shot to few-shot generated by subgraph sampling. During training, it is able to reuse and update previously achieved prototypes from the memory in a life-long learning cycle. In experiments, we change the training-test discrepancy and test task generation settings for thorough evaluations. GPN outperforms recent meta-learning methods on two benchmark datasets in all studied cases.
Graph convolutional network (GCN) has been successfully applied to many graph-based applications; however, training a large-scale GCN remains challenging. Current SGD-based algorithms suffer from either a high computational cost that exponentially grows with number of GCN layers, or a large space requirement for keeping the entire graph and the embedding of each node in memory. In this paper, we propose Cluster-GCN, a novel GCN algorithm that is suitable for SGD-based training by exploiting the graph clustering structure. Cluster-GCN works as the following: at each step, it samples a block of nodes that associate with a dense subgraph identified by a graph clustering algorithm, and restricts the neighborhood search within this subgraph. This simple but effective strategy leads to significantly improved memory and computational efficiency while being able to achieve comparable test accuracy with previous algorithms. To test the scalability of our algorithm, we create a new Amazon2M data with 2 million nodes and 61 million edges which is more than 5 times larger than the previous largest publicly available dataset (Reddit). For training a 3-layer GCN on this data, Cluster-GCN is faster than the previous state-of-the-art VR-GCN (1523 seconds vs 1961 seconds) and using much less memory (2.2GB vs 11.2GB). Furthermore, for training 4 layer GCN on this data, our algorithm can finish in around 36 minutes while all the existing GCN training algorithms fail to train due to the out-of-memory issue. Furthermore, Cluster-GCN allows us to train much deeper GCN without much time and memory overhead, which leads to improved prediction accuracy---using a 5-layer Cluster-GCN, we achieve state-of-the-art test F1 score 99.36 on the PPI dataset, while the previous best result was 98.71 by [16]. Our codes are publicly available at //github.com/google-research/google-research/tree/master/cluster_gcn.
With the rapid increase of large-scale, real-world datasets, it becomes critical to address the problem of long-tailed data distribution (i.e., a few classes account for most of the data, while most classes are under-represented). Existing solutions typically adopt class re-balancing strategies such as re-sampling and re-weighting based on the number of observations for each class. In this work, we argue that as the number of samples increases, the additional benefit of a newly added data point will diminish. We introduce a novel theoretical framework to measure data overlap by associating with each sample a small neighboring region rather than a single point. The effective number of samples is defined as the volume of samples and can be calculated by a simple formula $(1-\beta^{n})/(1-\beta)$, where $n$ is the number of samples and $\beta \in [0,1)$ is a hyperparameter. We design a re-weighting scheme that uses the effective number of samples for each class to re-balance the loss, thereby yielding a class-balanced loss. Comprehensive experiments are conducted on artificially induced long-tailed CIFAR datasets and large-scale datasets including ImageNet and iNaturalist. Our results show that when trained with the proposed class-balanced loss, the network is able to achieve significant performance gains on long-tailed datasets.
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