Network alignment (NA) is the task of finding the correspondence of nodes between two networks based on the network structure and node attributes. Our study is motivated by the fact that, since most of existing NA methods have attempted to discover all node pairs at once, they do not harness information enriched through interim discovery of node correspondences to more accurately find the next correspondences during the node matching. To tackle this challenge, we propose Grad-Align, a new NA method that gradually discovers node pairs by making full use of node pairs exhibiting strong consistency, which are easy to be discovered in the early stage of gradual matching. Specifically, Grad-Align first generates node embeddings of the two networks based on graph neural networks along with our layer-wise reconstruction loss, a loss built upon capturing the first-order and higher-order neighborhood structures. Then, nodes are gradually aligned by computing dual-perception similarity measures including the multi-layer embedding similarity as well as the Tversky similarity, an asymmetric set similarity using the Tversky index applicable to networks with different scales. Additionally, we incorporate an edge augmentation module into Grad-Align to reinforce the structural consistency. Through comprehensive experiments using real-world and synthetic datasets, we empirically demonstrate that Grad-Align consistently outperforms state-of-the-art NA methods.
Evasion Attacks (EA) are used to test the robustness of trained neural networks by distorting input data to misguide the model into incorrect classifications. Creating these attacks is a challenging task, especially with the ever-increasing complexity of models and datasets. In this work, we introduce a self-supervised, computationally economical method for generating adversarial examples, designed for the unseen black-box setting. Adapting techniques from representation learning, our method generates on-manifold EAs that are encouraged to resemble the data distribution. These attacks are comparable in effectiveness compared to the state-of-the-art when attacking the model trained on, but are significantly more effective when attacking unseen models, as the attacks are more related to the data rather than the model itself. Our experiments consistently demonstrate the method is effective across various models, unseen data categories, and even defended models, suggesting a significant role for on-manifold EAs when targeting unseen models.
Numerical models of electromyographic (EMG) signals have provided a huge contribution to our fundamental understanding of human neurophysiology and remain a central pillar of motor neuroscience and the development of human-machine interfaces. However, whilst modern biophysical simulations based on finite element methods are highly accurate, they are extremely computationally expensive and thus are generally limited to modelling static systems such as isometrically contracting limbs. As a solution to this problem, we propose a transfer learning approach, in which a conditional generative model is trained to mimic the output of an advanced numerical model. To this end, we present BioMime, a conditional generative neural network trained adversarially to generate motor unit activation potential waveforms under a wide variety of volume conductor parameters. We demonstrate the ability of such a model to predictively interpolate between a much smaller number of numerical model's outputs with a high accuracy. Consequently, the computational load is dramatically reduced, which allows the rapid simulation of EMG signals during truly dynamic and naturalistic movements.
Greedy layer-wise or module-wise training of neural networks is compelling in constrained and on-device settings where memory is limited, as it circumvents a number of problems of end-to-end back-propagation. However, it suffers from a stagnation problem, whereby early layers overfit and deeper layers stop increasing the test accuracy after a certain depth. We propose to solve this issue by introducing a module-wise regularization inspired by the minimizing movement scheme for gradient flows in distribution space. We call the method TRGL for Transport Regularized Greedy Learning and study it theoretically, proving that it leads to greedy modules that are regular and that progressively solve the task. Experimentally, we show improved accuracy of module-wise training of various architectures such as ResNets, Transformers and VGG, when our regularization is added, superior to that of other module-wise training methods and often to end-to-end training, with as much as 60% less memory usage.
Probabilistic modelling of power systems operation and planning processes depends on data-driven methods, which require sufficiently large datasets. When historical data lacks this, it is desired to model the underlying data generation mechanism as a probability distribution to assess the data quality and generate more data, if needed. Kernel density estimation (KDE) based models are popular choices for this task, but they fail to adapt to data regions with varying densities. In this paper, an adaptive KDE model is employed to circumvent this, where each kernel in the model has an individual bandwidth. The leave-one-out maximum log-likelihood (LOO-MLL) criterion is proposed to prevent the singular solutions that the regular MLL criterion gives rise to, and it is proven that LOO-MLL prevents these. Relying on this guaranteed robustness, the model is extended by assigning learnable weights to the kernels. In addition, a modified expectation-maximization algorithm is employed to accelerate the optimization speed reliably. The performance of the proposed method and models are exhibited on two power systems datasets using different statistical tests and by comparison with Gaussian mixture models. Results show that the proposed models have promising performance, in addition to their singularity prevention guarantees.
A fully discrete energy stability analysis is carried out for linear advection-diffusion problems discretized by generalized upwind summation-by-parts~(upwind gSBP) schemes in space and implicit-explicit Runge-Kutta~(IMEX-RK) schemes in time. Hereby, advection terms are discretized explicitly while diffusion terms are solved implicitly. In this context, specific combinations of space and time discretizations enjoy enhanced stability properties. In fact, if the first and second-derivative upwind gSBP operators fulfill a compatibility condition, the allowable time step size is independent of grid refinement, although the advective terms are discretized explicitly. In one space dimension it is shown that upwind gSBP schemes represent a general framework including standard discontinuous Galerkin~(DG) schemes on a global level. While previous work for DG schemes has demonstrated that the combination of upwind advection fluxes and the central-type first Bassi-Rebay~(BR1) scheme for diffusion does not allow for grid-independent stable time steps, the current work shows that central advection fluxes are compatible with BR1 regarding enhanced stability of IMEX time stepping. Furthermore, unlike previous discrete energy stability investigations for DG schemes, the present analysis is based on the discrete energy provided by the corresponding SBP norm matrix and yields time step restrictions independent of the discretization order in space since no finite-element-type inverse constants are involved. Numerical experiments are provided confirming these theoretical findings.
Deep neural networks (DNNs) have achieved remarkable success in numerous domains, and their application to PDE-related problems has been rapidly advancing. This paper provides an estimate for the generalization error of learning Lipschitz operators over Banach spaces using DNNs with applications to various PDE solution operators. The goal is to specify DNN width, depth, and the number of training samples needed to guarantee a certain testing error. Under mild assumptions on data distributions or operator structures, our analysis shows that deep operator learning can have a relaxed dependence on the discretization resolution of PDEs and, hence, lessen the curse of dimensionality in many PDE-related problems including elliptic equations, parabolic equations, and Burgers equations. Our results are also applied to give insights about discretization-invariance in operator learning.
Graph neural networks (GNNs) have been demonstrated to be a powerful algorithmic model in broad application fields for their effectiveness in learning over graphs. To scale GNN training up for large-scale and ever-growing graphs, the most promising solution is distributed training which distributes the workload of training across multiple computing nodes. However, the workflows, computational patterns, communication patterns, and optimization techniques of distributed GNN training remain preliminarily understood. In this paper, we provide a comprehensive survey of distributed GNN training by investigating various optimization techniques used in distributed GNN training. First, distributed GNN training is classified into several categories according to their workflows. In addition, their computational patterns and communication patterns, as well as the optimization techniques proposed by recent work are introduced. Second, the software frameworks and hardware platforms of distributed GNN training are also introduced for a deeper understanding. Third, distributed GNN training is compared with distributed training of deep neural networks, emphasizing the uniqueness of distributed GNN training. Finally, interesting issues and opportunities in this field are discussed.
Recently, graph neural networks have been gaining a lot of attention to simulate dynamical systems due to their inductive nature leading to zero-shot generalizability. Similarly, physics-informed inductive biases in deep-learning frameworks have been shown to give superior performance in learning the dynamics of physical systems. There is a growing volume of literature that attempts to combine these two approaches. Here, we evaluate the performance of thirteen different graph neural networks, namely, Hamiltonian and Lagrangian graph neural networks, graph neural ODE, and their variants with explicit constraints and different architectures. We briefly explain the theoretical formulation highlighting the similarities and differences in the inductive biases and graph architecture of these systems. We evaluate these models on spring, pendulum, gravitational, and 3D deformable solid systems to compare the performance in terms of rollout error, conserved quantities such as energy and momentum, and generalizability to unseen system sizes. Our study demonstrates that GNNs with additional inductive biases, such as explicit constraints and decoupling of kinetic and potential energies, exhibit significantly enhanced performance. Further, all the physics-informed GNNs exhibit zero-shot generalizability to system sizes an order of magnitude larger than the training system, thus providing a promising route to simulate large-scale realistic systems.
Graph neural networks (GNNs) have demonstrated a significant boost in prediction performance on graph data. At the same time, the predictions made by these models are often hard to interpret. In that regard, many efforts have been made to explain the prediction mechanisms of these models from perspectives such as GNNExplainer, XGNN and PGExplainer. Although such works present systematic frameworks to interpret GNNs, a holistic review for explainable GNNs is unavailable. In this survey, we present a comprehensive review of explainability techniques developed for GNNs. We focus on explainable graph neural networks and categorize them based on the use of explainable methods. We further provide the common performance metrics for GNNs explanations and point out several future research directions.
With the rapid increase of large-scale, real-world datasets, it becomes critical to address the problem of long-tailed data distribution (i.e., a few classes account for most of the data, while most classes are under-represented). Existing solutions typically adopt class re-balancing strategies such as re-sampling and re-weighting based on the number of observations for each class. In this work, we argue that as the number of samples increases, the additional benefit of a newly added data point will diminish. We introduce a novel theoretical framework to measure data overlap by associating with each sample a small neighboring region rather than a single point. The effective number of samples is defined as the volume of samples and can be calculated by a simple formula $(1-\beta^{n})/(1-\beta)$, where $n$ is the number of samples and $\beta \in [0,1)$ is a hyperparameter. We design a re-weighting scheme that uses the effective number of samples for each class to re-balance the loss, thereby yielding a class-balanced loss. Comprehensive experiments are conducted on artificially induced long-tailed CIFAR datasets and large-scale datasets including ImageNet and iNaturalist. Our results show that when trained with the proposed class-balanced loss, the network is able to achieve significant performance gains on long-tailed datasets.