COVID-19 has caused many deaths worldwide. The automation of the diagnosis of this virus is highly desired. Convolutional neural networks (CNNs) have shown outstanding classification performance on image datasets. To date, it appears that COVID computer-aided diagnosis systems based on CNNs and clinical information have not yet been analysed or explored. We propose a novel method, named the CNN-AE, to predict the survival chance of COVID-19 patients using a CNN trained with clinical information. Notably, the required resources to prepare CT images are expensive and limited compared to those required to collect clinical data, such as blood pressure, liver disease, etc. We evaluated our method using a publicly available clinical dataset that we collected. The dataset properties were carefully analysed to extract important features and compute the correlations of features. A data augmentation procedure based on autoencoders (AEs) was proposed to balance the dataset. The experimental results revealed that the average accuracy of the CNN-AE (96.05%) was higher than that of the CNN (92.49%). To demonstrate the generality of our augmentation method, we trained some existing mortality risk prediction methods on our dataset (with and without data augmentation) and compared their performances. We also evaluated our method using another dataset for further generality verification. To show that clinical data can be used for COVID-19 survival chance prediction, the CNN-AE was compared with multiple pre-trained deep models that were tuned based on CT images.
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Graph Neural Networks (GNNs) aim to extend deep learning techniques to graph data and have achieved significant progress in graph analysis tasks (e.g., node classification) in recent years. However, similar to other deep neural networks like Convolutional Neural Networks (CNNs) and Recurrent Neural Networks (RNNs), GNNs behave like a black box with their details hidden from model developers and users. It is therefore difficult to diagnose possible errors of GNNs. Despite many visual analytics studies being done on CNNs and RNNs, little research has addressed the challenges for GNNs. This paper fills the research gap with an interactive visual analysis tool, GNNLens, to assist model developers and users in understanding and analyzing GNNs. Specifically, Parallel Sets View and Projection View enable users to quickly identify and validate error patterns in the set of wrong predictions; Graph View and Feature Matrix View offer a detailed analysis of individual nodes to assist users in forming hypotheses about the error patterns. Since GNNs jointly model the graph structure and the node features, we reveal the relative influences of the two types of information by comparing the predictions of three models: GNN, Multi-Layer Perceptron (MLP), and GNN Without Using Features (GNNWUF). Two case studies and interviews with domain experts demonstrate the effectiveness of GNNLens in facilitating the understanding of GNN models and their errors.
Bridging the semantic gap between image and question is an important step to improve the accuracy of the Visual Question Answering (VQA) task. However, most of the existing VQA methods focus on attention mechanisms or visual relations for reasoning the answer, while the features at different semantic levels are not fully utilized. In this paper, we present a new reasoning framework to fill the gap between visual features and semantic clues in the VQA task. Our method first extracts the features and predicates from the image and question. We then propose a new reasoning framework to effectively jointly learn these features and predicates in a coarse-to-fine manner. The intensively experimental results on three large-scale VQA datasets show that our proposed approach achieves superior accuracy comparing with other state-of-the-art methods. Furthermore, our reasoning framework also provides an explainable way to understand the decision of the deep neural network when predicting the answer.
The new Coronavirus is spreading rapidly, and it has taken the lives of many people so far. The virus has destructive effects on the human lung, and early detection is very important. Deep Convolution neural networks are such powerful tools in classifying images. Therefore, in this paper, a hybrid approach based on a deep network is presented. Feature vectors were extracted by applying a deep convolution neural network on the images, and useful features were selected by the binary differential meta-heuristic algorithm. These optimized features were given to the SVM classifier. A database consisting of three categories of images such as COVID-19, pneumonia, and healthy included in 1092 X-ray samples was considered. The proposed method achieved an accuracy of 99.43%, a sensitivity of 99.16%, and a specificity of 99.57%. Our results demonstrate that the suggested approach is better than recent studies on COVID-19 detection with X-ray images.
In this work, we study the problem of clustering survival data $-$ a challenging and so far under-explored task. We introduce a novel semi-supervised probabilistic approach to cluster survival data by leveraging recent advances in stochastic gradient variational inference. In contrast to previous work, our proposed method employs a deep generative model to uncover the underlying distribution of both the explanatory variables and censored survival times. We compare our model to the related work on clustering and mixture models for survival data in comprehensive experiments on a wide range of synthetic, semi-synthetic, and real-world datasets, including medical imaging data. Our method performs better at identifying clusters and is competitive at predicting survival times. Relying on novel generative assumptions, the proposed model offers a holistic perspective on clustering survival data and holds a promise of discovering subpopulations whose survival is regulated by different generative mechanisms.
One of the most important studies in finance is to find out whether stock returns could be predicted. This research aims to create a new multivariate model, which includes dividend yield, earnings-to-price ratio, book-to-market ratio as well as consumption-wealth ratio as explanatory variables, for future stock returns predictions. The new multivariate model will be assessed for its forecasting performance using empirical analysis. The empirical analysis is performed on S&P500 quarterly data from Quarter 1, 1952 to Quarter 4, 2019 as well as S&P500 monthly data from Month 12, 1920 to Month 12, 2019. Results have shown this new multivariate model has predictability for future stock returns. When compared to other benchmark models, the new multivariate model performs the best in terms of the Root Mean Squared Error (RMSE) most of the time.
Image classification has significantly improved using deep learning. This is mainly due to convolutional neural networks (CNNs) that are capable of learning rich feature extractors from large datasets. However, most deep learning classification methods are trained on clean images and are not robust when handling noisy ones, even if a restoration preprocessing step is applied. While novel methods address this problem, they rely on modified feature extractors and thus necessitate retraining. We instead propose a method that can be applied on a $pretrained$ classifier. Our method exploits a fidelity map estimate that is fused into the internal representations of the feature extractor, thereby guiding the attention of the network and making it more robust to noisy data. We improve the noisy-image classification (NIC) results by significantly large margins, especially at high noise levels, and come close to the fully retrained approaches. Furthermore, as proof of concept, we show that when using our oracle fidelity map we even outperform the fully retrained methods, whether trained on noisy or restored images.
Graph convolutional network (GCN) has been successfully applied to many graph-based applications; however, training a large-scale GCN remains challenging. Current SGD-based algorithms suffer from either a high computational cost that exponentially grows with number of GCN layers, or a large space requirement for keeping the entire graph and the embedding of each node in memory. In this paper, we propose Cluster-GCN, a novel GCN algorithm that is suitable for SGD-based training by exploiting the graph clustering structure. Cluster-GCN works as the following: at each step, it samples a block of nodes that associate with a dense subgraph identified by a graph clustering algorithm, and restricts the neighborhood search within this subgraph. This simple but effective strategy leads to significantly improved memory and computational efficiency while being able to achieve comparable test accuracy with previous algorithms. To test the scalability of our algorithm, we create a new Amazon2M data with 2 million nodes and 61 million edges which is more than 5 times larger than the previous largest publicly available dataset (Reddit). For training a 3-layer GCN on this data, Cluster-GCN is faster than the previous state-of-the-art VR-GCN (1523 seconds vs 1961 seconds) and using much less memory (2.2GB vs 11.2GB). Furthermore, for training 4 layer GCN on this data, our algorithm can finish in around 36 minutes while all the existing GCN training algorithms fail to train due to the out-of-memory issue. Furthermore, Cluster-GCN allows us to train much deeper GCN without much time and memory overhead, which leads to improved prediction accuracy---using a 5-layer Cluster-GCN, we achieve state-of-the-art test F1 score 99.36 on the PPI dataset, while the previous best result was 98.71 by [16]. Our codes are publicly available at //github.com/google-research/google-research/tree/master/cluster_gcn.
The classification of sentences is very challenging, since sentences contain the limited contextual information. In this paper, we proposed an Attention-Gated Convolutional Neural Network (AGCNN) for sentence classification, which generates attention weights from the feature's context windows of different sizes by using specialized convolution encoders. It makes full use of limited contextual information to extract and enhance the influence of important features in predicting the sentence's category. Experimental results demonstrated that our model can achieve up to 3.1% higher accuracy than standard CNN models, and gain competitive results over the baselines on four out of the six tasks. Besides, we designed an activation function, namely, Natural Logarithm rescaled Rectified Linear Unit (NLReLU). Experiments showed that NLReLU can outperform ReLU and is comparable to other well-known activation functions on AGCNN.
In this paper, we propose an effective electrocardiogram (ECG) arrhythmia classification method using a deep two-dimensional convolutional neural network (CNN) which recently shows outstanding performance in the field of pattern recognition. Every ECG beat was transformed into a two-dimensional grayscale image as an input data for the CNN classifier. Optimization of the proposed CNN classifier includes various deep learning techniques such as batch normalization, data augmentation, Xavier initialization, and dropout. In addition, we compared our proposed classifier with two well-known CNN models; AlexNet and VGGNet. ECG recordings from the MIT-BIH arrhythmia database were used for the evaluation of the classifier. As a result, our classifier achieved 99.05% average accuracy with 97.85% average sensitivity. To precisely validate our CNN classifier, 10-fold cross-validation was performed at the evaluation which involves every ECG recording as a test data. Our experimental results have successfully validated that the proposed CNN classifier with the transformed ECG images can achieve excellent classification accuracy without any manual pre-processing of the ECG signals such as noise filtering, feature extraction, and feature reduction.
Graph Convolutional Neural Networks (Graph CNNs) are generalizations of classical CNNs to handle graph data such as molecular data, point could and social networks. Current filters in graph CNNs are built for fixed and shared graph structure. However, for most real data, the graph structures varies in both size and connectivity. The paper proposes a generalized and flexible graph CNN taking data of arbitrary graph structure as input. In that way a task-driven adaptive graph is learned for each graph data while training. To efficiently learn the graph, a distance metric learning is proposed. Extensive experiments on nine graph-structured datasets have demonstrated the superior performance improvement on both convergence speed and predictive accuracy.
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