Gaussian stochastic process (GaSP) has been widely used as a prior over functions due to its flexibility and tractability in modeling. However, the computational cost in evaluating the likelihood is $O(n^3)$, where $n$ is the number of observed points in the process, as it requires to invert the covariance matrix. This bottleneck prevents GaSP being widely used in large-scale data. We propose a general class of nonseparable GaSP models for multiple functional observations with a fast and exact algorithm, in which the computation is linear ($O(n)$) and exact, requiring no approximation to compute the likelihood. We show that the commonly used linear regression and separable models are special cases of the proposed nonseparable GaSP model. Through the study of an epigenetic application, the proposed nonseparable GaSP model can accurately predict the genome-wide DNA methylation levels and compares favorably to alternative methods, such as linear regression, random forest and localized Kriging method. The algorithm for fast computation is implemented in the ${\tt FastGaSP}$ R package on CRAN.
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Unmeasured or latent variables are often the cause of correlations between multivariate measurements, which are studied in a variety of fields such as psychology, ecology, and medicine. For Gaussian measurements, there are classical tools such as factor analysis or principal component analysis with a well-established theory and fast algorithms. Generalized Linear Latent Variable models (GLLVMs) generalize such factor models to non-Gaussian responses. However, current algorithms for estimating model parameters in GLLVMs require intensive computation and do not scale to large datasets with thousands of observational units or responses. In this article, we propose a new approach for fitting GLLVMs to high-dimensional datasets, based on approximating the model using penalized quasi-likelihood and then using a Newton method and Fisher scoring to learn the model parameters. Computationally, our method is noticeably faster and more stable, enabling GLLVM fits to much larger matrices than previously possible. We apply our method on a dataset of 48,000 observational units with over 2,000 observed species in each unit and find that most of the variability can be explained with a handful of factors. We publish an easy-to-use implementation of our proposed fitting algorithm.
Generalized linear models are flexible tools for the analysis of diverse datasets, but the classical formulation requires that the parametric component is correctly specified and the data contain no atypical observations. To address these shortcomings we introduce and study a family of nonparametric full rank and lower rank spline estimators that result from the minimization of a penalized power divergence. The proposed class of estimators is easily implementable, offers high protection against outlying observations and can be tuned for arbitrarily high efficiency in the case of clean data. We show that under weak assumptions these estimators converge at a fast rate and illustrate their highly competitive performance on a simulation study and two real-data examples.
Video frame interpolation aims to synthesize one or multiple frames between two consecutive frames in a video. It has a wide range of applications including slow-motion video generation, frame-rate up-scaling and developing video codecs. Some older works tackled this problem by assuming per-pixel linear motion between video frames. However, objects often follow a non-linear motion pattern in the real domain and some recent methods attempt to model per-pixel motion by non-linear models (e.g., quadratic). A quadratic model can also be inaccurate, especially in the case of motion discontinuities over time (i.e. sudden jerks) and occlusions, where some of the flow information may be invalid or inaccurate. In our paper, we propose to approximate the per-pixel motion using a space-time convolution network that is able to adaptively select the motion model to be used. Specifically, we are able to softly switch between a linear and a quadratic model. Towards this end, we use an end-to-end 3D CNN encoder-decoder architecture over bidirectional optical flows and occlusion maps to estimate the non-linear motion model of each pixel. Further, a motion refinement module is employed to refine the non-linear motion and the interpolated frames are estimated by a simple warping of the neighboring frames with the estimated per-pixel motion. Through a set of comprehensive experiments, we validate the effectiveness of our model and show that our method outperforms state-of-the-art algorithms on four datasets (Vimeo, DAVIS, HD and GoPro).
Functional constrained optimization is becoming more and more important in machine learning and operations research. Such problems have potential applications in risk-averse machine learning, semisupervised learning, and robust optimization among others. In this paper, we first present a novel Constraint Extrapolation (ConEx) method for solving convex functional constrained problems, which utilizes linear approximations of the constraint functions to define the extrapolation (or acceleration) step. We show that this method is a unified algorithm that achieves the best-known rate of convergence for solving different functional constrained convex composite problems, including convex or strongly convex, and smooth or nonsmooth problems with a stochastic objective and/or stochastic constraints. Many of these rates of convergence were in fact obtained for the first time in the literature. In addition, ConEx is a single-loop algorithm that does not involve any penalty subproblems. Contrary to existing primal-dual methods, it does not require the projection of Lagrangian multipliers into a (possibly unknown) bounded set. Second, for nonconvex functional constrained problems, we introduce a new proximal point method that transforms the initial nonconvex problem into a sequence of convex problems by adding quadratic terms to both the objective and constraints. Under a certain MFCQ-type assumption, we establish the convergence and rate of convergence of this method to KKT points when the convex subproblems are solved exactly or inexactly. For large-scale and stochastic problems, we present a more practical proximal point method in which the approximate solutions of the subproblems are computed by the aforementioned ConEx method. To the best of our knowledge, most of these convergence and complexity results of the proximal point method for nonconvex problems also seem to be new in the literature.
We analyze stochastic conditional gradient methods for constrained optimization problems arising in over-parametrized machine learning. We show that one could leverage the interpolation-like conditions satisfied by such models to obtain improved oracle complexities. Specifically, when the objective function is convex, we show that the conditional gradient method requires $\mathcal{O}(\epsilon^{-2})$ calls to the stochastic gradient oracle to find an $\epsilon$-optimal solution. Furthermore, by including a gradient sliding step, we show that the number of calls reduces to $\mathcal{O}(\epsilon^{-1.5})$.
Reference priors are theoretically attractive for the analysis of geostatistical data since they enable automatic Bayesian analysis and have desirable Bayesian and frequentist properties. But their use is hindered by computational hurdles that make their application in practice challenging. In this work, we derive a new class of default priors that approximate reference priors for the parameters of some Gaussian random fields. It is based on an approximation to the integrated likelihood of the covariance parameters derived from the spectral approximation of stationary random fields. This prior depends on the structure of the mean function and the spectral density of the model evaluated at a set of spectral points associated with an auxiliary regular grid. In addition to preserving the desirable Bayesian and frequentist properties, these approximate reference priors are more stable, and their computations are much less onerous than those of exact reference priors. Unlike exact reference priors, the marginal approximate reference prior of correlation parameter is always proper, regardless of the mean function or the smoothness of the correlation function. This property has important consequences for covariance model selection. An illustration comparing default Bayesian analyses is provided with a data set of lead pollution in Galicia, Spain.
We introduce Stochastic Asymptotical Regularization (SAR) methods for the uncertainty quantification of the stable approximate solution of ill-posed linear-operator equations, which are deterministic models for numerous inverse problems in science and engineering. We prove the regularizing properties of SAR with regard to mean-square convergence. We also show that SAR is an optimal-order regularization method for linear ill-posed problems provided that the terminating time of SAR is chosen according to the smoothness of the solution. This result is proven for both a priori and a posteriori stopping rules under general range-type source conditions. Furthermore, some converse results of SAR are verified. Two iterative schemes are developed for the numerical realization of SAR, and the convergence analyses of these two numerical schemes are also provided. A toy example and a real-world problem of biosensor tomography are studied to show the accuracy and the advantages of SAR: compared with the conventional deterministic regularization approaches for deterministic inverse problems, SAR can provide the uncertainty quantification of the quantity of interest, which can in turn be used to reveal and explicate the hidden information about real-world problems, usually obscured by the incomplete mathematical modeling and the ascendence of complex-structured noise.
Continuous determinantal point processes (DPPs) are a class of repulsive point processes on $\mathbb{R}^d$ with many statistical applications. Although an explicit expression of their density is known, it is too complicated to be used directly for maximum likelihood estimation. In the stationary case, an approximation using Fourier series has been suggested, but it is limited to rectangular observation windows and no theoretical results support it. In this contribution, we investigate a different way to approximate the likelihood by looking at its asymptotic behaviour when the observation window grows towards $\mathbb{R}^d$. This new approximation is not limited to rectangular windows, is faster to compute than the previous one, does not require any tuning parameter, and some theoretical justifications are provided. It moreover provides an explicit formula for estimating the asymptotic variance of the associated estimator. The performances are assessed in a simulation study on standard parametric models on $\mathbb{R}^d$ and compare favourably to common alternative estimation methods for continuous DPPs.
We give a review of recent ANOVA-like procedures for testing group differences based on data in a metric space and present a new such procedure. Our statistic is based on the classic Levene's test for detecting differences in dispersion. It uses only pairwise distances of data points and and can be computed quickly and precisely in situations where the computation of barycenters ("generalized means") in the data space is slow, only by approximation or even infeasible. We show the asymptotic normality of our test statistic and present simulation studies for spatial point pattern data, in which we compare the various procedures in a 1-way ANOVA setting. As an application, we perform a 2-way ANOVA on a data set of bubbles in a mineral flotation process.
Accelerated Randomized Coordinate Descent Algorithms for Stochastic Optimization and Online Learning
We propose accelerated randomized coordinate descent algorithms for stochastic optimization and online learning. Our algorithms have significantly less per-iteration complexity than the known accelerated gradient algorithms. The proposed algorithms for online learning have better regret performance than the known randomized online coordinate descent algorithms. Furthermore, the proposed algorithms for stochastic optimization exhibit as good convergence rates as the best known randomized coordinate descent algorithms. We also show simulation results to demonstrate performance of the proposed algorithms.
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