In this research, we investigate the possibility of applying a search strategy to genetic algorithms to explore the entire genetic tree structure. Several methods aid in performing tree searches; however, simpler algorithms such as breadth-first, depth-first, and iterative techniques are computation-heavy and often result in a long execution time. Adversarial techniques are often the preferred mechanism when performing a probabilistic search, yielding optimal results more quickly. The problem we are trying to tackle in this paper is the optimization of neural networks using genetic algorithms. Genetic algorithms (GA) form a tree of possible states and provide a mechanism for rewards via the fitness function. Monte Carlo Tree Search (MCTS) has proven to be an effective tree search strategy given states and rewards; therefore, we will combine these approaches to optimally search for the best result generated with genetic algorithms.
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In this paper, we study data-driven localized wave solutions and parameter discovery in the massive Thirring (MT) model via the deep learning in the framework of physics-informed neural networks (PINNs) algorithm. Abundant data-driven solutions including soliton of bright/dark type, breather and rogue wave are simulated accurately and analyzed contrastively with relative and absolute errors. For higher-order localized wave solutions, we employ the extended PINNs (XPINNs) with domain decomposition to capture the complete pictures of dynamic behaviors such as soliton collisions, breather oscillations and rogue-wave superposition. In particular, we modify the interface line in domain decomposition of XPINNs into a small interface zone and introduce the pseudo initial, residual and gradient conditions as interface conditions linked adjacently with individual neural networks. Then this modified approach is applied successfully to various solutions ranging from bright-bright soliton, dark-dark soliton, dark-antidark soliton, general breather, Kuznetsov-Ma breather and second-order rogue wave. Experimental results show that this improved version of XPINNs reduce the complexity of computation with faster convergence rate and keep the quality of learned solutions with smoother stitching performance as well. For the inverse problems, the unknown coefficient parameters of linear and nonlinear terms in the MT model are identified accurately with and without noise by using the classical PINNs algorithm.
This paper studies the relationship between undirected (unrooted) and directed (rooted) phylogenetic networks. We describe a polynomial-time algorithm for deciding whether an undirected nonbinary phylogenetic network, given the locations of the root and reticulation vertices, can be oriented as a directed nonbinary phylogenetic network. Moreover, we characterize when this is possible and show that, in such instances, the resulting directed nonbinary phylogenetic network is unique. In addition, without being given the location of the root and the reticulation vertices, we describe an algorithm for deciding whether an undirected binary phylogenetic network $N$ can be oriented as a directed binary phylogenetic network of a certain class. The algorithm is fixed-parameter tractable (FPT) when the parameter is the level of $N$ and is applicable to classes of directed phylogenetic networks that satisfy certain conditions. As an example, we show that the well-studied class of binary tree-child networks satisfies these conditions.
In this paper, we propose the unfitted spectral element method for solving elliptic interface and corresponding eigenvalue problems. The novelty of the proposed method lies in its combination of the spectral accuracy of the spectral element method and the flexibility of the unfitted Nitsche's method. We also use tailored ghost penalty terms to enhance its robustness. We establish optimal $hp$ convergence rates for both elliptic interface problems and interface eigenvalue problems. Additionally, we demonstrate spectral accuracy for model problems in terms of polynomial degree.
Auxiliary data sources have become increasingly important in epidemiological surveillance, as they are often available at a finer spatial and temporal resolution, larger coverage, and lower latency than traditional surveillance signals. We describe the problem of spatial and temporal heterogeneity in these signals derived from these data sources, where spatial and/or temporal biases are present. We present a method to use a ``guiding'' signal to correct for these biases and produce a more reliable signal that can be used for modeling and forecasting. The method assumes that the heterogeneity can be approximated by a low-rank matrix and that the temporal heterogeneity is smooth over time. We also present a hyperparameter selection algorithm to choose the parameters representing the matrix rank and degree of temporal smoothness of the corrections. In the absence of ground truth, we use maps and plots to argue that this method does indeed reduce heterogeneity. Reducing heterogeneity from auxiliary data sources greatly increases their utility in modeling and forecasting epidemics.
Deterministic planning assumes that the planning evolves along a fully predictable path, and therefore it loses the practical value in most real projections. A more realistic view is that planning ought to take into consideration partial observability beforehand and aim for a more flexible and robust solution. What is more significant, it is inevitable that the quality of plan varies dramatically in the partially observable environment. In this paper we propose a probabilistic contingent Hierarchical Task Network (HTN) planner, named High-Quality Contingent Planner (HQCP), to generate high-quality plans in the partially observable environment. The formalisms in HTN planning are extended into partial observability and are evaluated regarding the cost. Next, we explore a novel heuristic for high-quality plans and develop the integrated planning algorithm. Finally, an empirical study verifies the effectiveness and efficiency of the planner both in probabilistic contingent planning and for obtaining high-quality plans.
Including information from additional spectral bands (e.g., near-infrared) can improve deep learning model performance for many vision-oriented tasks. There are many possible ways to incorporate this additional information into a deep learning model, but the optimal fusion strategy has not yet been determined and can vary between applications. At one extreme, known as "early fusion," additional bands are stacked as extra channels to obtain an input image with more than three channels. At the other extreme, known as "late fusion," RGB and non-RGB bands are passed through separate branches of a deep learning model and merged immediately before a final classification or segmentation layer. In this work, we characterize the performance of a suite of multispectral deep learning models with different fusion approaches, quantify their relative reliance on different input bands and evaluate their robustness to naturalistic image corruptions affecting one or more input channels.
Understanding the interactions of a solute with its environment is of fundamental importance in chemistry and biology. In this work, we propose a deep neural network architecture for atom type embeddings in its molecular context and interatomic potential that follows fundamental physical laws. The architecture is applied to predict physicochemical properties in heterogeneous systems including solvation in diverse solvents, 1-octanol-water partitioning, and PAMPA with a single set of network weights. We show that our architecture is generalized well to the physicochemical properties and outperforms state-of-the-art approaches based on quantum mechanics and neural networks in the task of solvation free energy prediction. The interatomic potentials at each atom in a solute obtained from the model allow quantitative analysis of the physicochemical properties at atomic resolution consistent with chemical and physical reasoning. The software is available at //github.com/SehanLee/C3Net.
We hypothesize that due to the greedy nature of learning in multi-modal deep neural networks, these models tend to rely on just one modality while under-fitting the other modalities. Such behavior is counter-intuitive and hurts the models' generalization, as we observe empirically. To estimate the model's dependence on each modality, we compute the gain on the accuracy when the model has access to it in addition to another modality. We refer to this gain as the conditional utilization rate. In the experiments, we consistently observe an imbalance in conditional utilization rates between modalities, across multiple tasks and architectures. Since conditional utilization rate cannot be computed efficiently during training, we introduce a proxy for it based on the pace at which the model learns from each modality, which we refer to as the conditional learning speed. We propose an algorithm to balance the conditional learning speeds between modalities during training and demonstrate that it indeed addresses the issue of greedy learning. The proposed algorithm improves the model's generalization on three datasets: Colored MNIST, Princeton ModelNet40, and NVIDIA Dynamic Hand Gesture.
The growing energy and performance costs of deep learning have driven the community to reduce the size of neural networks by selectively pruning components. Similarly to their biological counterparts, sparse networks generalize just as well, if not better than, the original dense networks. Sparsity can reduce the memory footprint of regular networks to fit mobile devices, as well as shorten training time for ever growing networks. In this paper, we survey prior work on sparsity in deep learning and provide an extensive tutorial of sparsification for both inference and training. We describe approaches to remove and add elements of neural networks, different training strategies to achieve model sparsity, and mechanisms to exploit sparsity in practice. Our work distills ideas from more than 300 research papers and provides guidance to practitioners who wish to utilize sparsity today, as well as to researchers whose goal is to push the frontier forward. We include the necessary background on mathematical methods in sparsification, describe phenomena such as early structure adaptation, the intricate relations between sparsity and the training process, and show techniques for achieving acceleration on real hardware. We also define a metric of pruned parameter efficiency that could serve as a baseline for comparison of different sparse networks. We close by speculating on how sparsity can improve future workloads and outline major open problems in the field.
Graph representation learning for hypergraphs can be used to extract patterns among higher-order interactions that are critically important in many real world problems. Current approaches designed for hypergraphs, however, are unable to handle different types of hypergraphs and are typically not generic for various learning tasks. Indeed, models that can predict variable-sized heterogeneous hyperedges have not been available. Here we develop a new self-attention based graph neural network called Hyper-SAGNN applicable to homogeneous and heterogeneous hypergraphs with variable hyperedge sizes. We perform extensive evaluations on multiple datasets, including four benchmark network datasets and two single-cell Hi-C datasets in genomics. We demonstrate that Hyper-SAGNN significantly outperforms the state-of-the-art methods on traditional tasks while also achieving great performance on a new task called outsider identification. Hyper-SAGNN will be useful for graph representation learning to uncover complex higher-order interactions in different applications.
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