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The semantic segmentation of pelvic organs via MRI has important clinical significance. Recently, deep learning-enabled semantic segmentation has facilitated the three-dimensional geometric reconstruction of pelvic floor organs, providing clinicians with accurate and intuitive diagnostic results. However, the task of labeling pelvic floor MRI segmentation, typically performed by clinicians, is labor-intensive and costly, leading to a scarcity of labels. Insufficient segmentation labels limit the precise segmentation and reconstruction of pelvic floor organs. To address these issues, we propose a semi-supervised framework for pelvic organ segmentation. The implementation of this framework comprises two stages. In the first stage, it performs self-supervised pre-training using image restoration tasks. Subsequently, fine-tuning of the self-supervised model is performed, using labeled data to train the segmentation model. In the second stage, the self-supervised segmentation model is used to generate pseudo labels for unlabeled data. Ultimately, both labeled and unlabeled data are utilized in semi-supervised training. Upon evaluation, our method significantly enhances the performance in the semantic segmentation and geometric reconstruction of pelvic organs, Dice coefficient can increase by 2.65% averagely. Especially for organs that are difficult to segment, such as the uterus, the accuracy of semantic segmentation can be improved by up to 3.70%.

Imaging through perturbed multimode fibres based on deep learning has been widely researched. However, existing methods mainly use target-speckle pairs in different configurations. It is challenging to reconstruct targets without trained networks. In this paper, we propose a physics-assisted, unsupervised, learning-based fibre imaging scheme. The role of the physical prior is to simplify the mapping relationship between the speckle pattern and the target image, thereby reducing the computational complexity. The unsupervised network learns target features according to the optimized direction provided by the physical prior. Therefore, the reconstruction process of the online learning only requires a few speckle patterns and unpaired targets. The proposed scheme also increases the generalization ability of the learning-based method in perturbed multimode fibres. Our scheme has the potential to extend the application of multimode fibre imaging.

The paper tackles the problem of clustering multiple networks, directed or not, that do not share the same set of vertices, into groups of networks with similar topology. A statistical model-based approach based on a finite mixture of stochastic block models is proposed. A clustering is obtained by maximizing the integrated classification likelihood criterion. This is done by a hierarchical agglomerative algorithm, that starts from singleton clusters and successively merges clusters of networks. As such, a sequence of nested clusterings is computed that can be represented by a dendrogram providing valuable insights on the collection of networks. Using a Bayesian framework, model selection is performed in an automated way since the algorithm stops when the best number of clusters is attained. The algorithm is computationally efficient, when carefully implemented. The aggregation of clusters requires a means to overcome the label-switching problem of the stochastic block model and to match the block labels of the networks. To address this problem, a new tool is proposed based on a comparison of the graphons of the associated stochastic block models. The clustering approach is assessed on synthetic data. An application to a set of ecological networks illustrates the interpretability of the obtained results.

In modern computational materials science, deep learning has shown the capability to predict interatomic potentials, thereby supporting and accelerating conventional simulations. However, existing models typically sacrifice either accuracy or efficiency. Moreover, lightweight models are highly demanded for offering simulating systems on a considerably larger scale at reduced computational costs. A century ago, Felix Bloch demonstrated how leveraging the equivariance of the translation operation on a crystal lattice (with geometric symmetry) could significantly reduce the computational cost of determining wavefunctions and accurately calculate material properties. Here, we introduce a lightweight equivariant interaction graph neural network (LEIGNN) that can enable accurate and efficient interatomic potential and force predictions in crystals. Rather than relying on higher-order representations, LEIGNN employs a scalar-vector dual representation to encode equivariant features. By extracting both local and global structures from vector representations and learning geometric symmetry information, our model remains lightweight while ensuring prediction accuracy and robustness through the equivariance. Our results show that LEIGNN consistently outperforms the prediction performance of the representative baselines and achieves significant efficiency across diverse datasets, which include catalysts, molecules, and organic isomers. Finally, to further validate the predicted interatomic potentials from our model, we conduct classical molecular dynamics (MD) and ab initio MD simulation across various systems, including solid, liquid, and gas. It is found that LEIGNN can achieve the accuracy of ab initio MD and retain the computational efficiency of classical MD across all examined systems, demonstrating its accuracy, efficiency, and universality.

Optical computing systems can provide high-speed and low-energy data processing but face deficiencies in computationally demanding training and simulation-to-reality gap. We propose a model-free solution for lightweight in situ optimization of optical computing systems based on the score gradient estimation algorithm. This approach treats the system as a black box and back-propagates loss directly to the optical weights' probabilistic distributions, hence circumventing the need for computation-heavy and biased system simulation. We demonstrate a superior classification accuracy on the MNIST and FMNIST datasets through experiments on a single-layer diffractive optical computing system. Furthermore, we show its potential for image-free and high-speed cell analysis. The inherent simplicity of our proposed method, combined with its low demand for computational resources, expedites the transition of optical computing from laboratory demonstrations to real-world applications.

The synthesis of information deriving from complex networks is a topic receiving increasing relevance in ecology and environmental sciences. In particular, the aggregation of multilayer networks, i.e. network structures formed by multiple interacting networks (the layers), constitutes a fast-growing field. In several environmental applications, the layers of a multilayer network are modelled as a collection of similarity matrices describing how similar pairs of biological entities are, based on different types of features (e.g. biological traits). The present paper first discusses two main techniques for combining the multi-layered information into a single network (the so-called monoplex), i.e. Similarity Network Fusion (SNF) and Similarity Matrix Average (SMA). Then, the effectiveness of the two methods is tested on a real-world dataset of the relative abundance of microbial species in the ecosystems of nine glaciers (four glaciers in the Alps and five in the Andes). A preliminary clustering analysis on the monoplexes obtained with different methods shows the emergence of a tightly connected community formed by species that are typical of cryoconite holes worldwide. Moreover, the weights assigned to different layers by the SMA algorithm suggest that two large South American glaciers (Exploradores and Perito Moreno) are structurally different from the smaller glaciers in both Europe and South America. Overall, these results highlight the importance of integration methods in the discovery of the underlying organizational structure of biological entities in multilayer ecological networks.

We introduce PUNQ, a novel quantum programming language with quantum control, which features higher-order programs that can be superposed, enabling quantum control via quantum conditionals. Our language boasts a type system guaranteeing both unitarity and polynomial-time normalization. Unitarity is achieved by using a special modality for superpositions while requiring orthogonality among superposed terms. Polynomial-time normalization is achieved using a linear-logic-based type discipline employing Barber and Plotkin duality along with a specific modality to account for potential duplications. This type discipline also guarantees that derived values have polynomial size. PUNQ seamlessly combines the two modalities: quantum circuit programs uphold unitarity, and all programs are evaluated in polynomial time, ensuring their feasibility.

Conventional local planners frequently become trapped in a locally optimal trajectory, primarily due to their inability to traverse obstacles. Having a larger number of topologically distinctive paths increases the likelihood of finding the optimal trajectory. It is crucial to generate a substantial number of topologically distinctive paths in real-time. Accordingly, we propose an efficient path planning approach based on tangent graphs to yield multiple topologically distinctive paths. Diverging from existing algorithms, our method eliminates the necessity of distinguishing whether two paths belong to the same topology; instead, it generates multiple topologically distinctive paths based on the locally shortest property of tangents. Additionally, we introduce a priority constraint for the queue during graph search, thereby averting the exponential expansion of queue size. To illustrate the advantages of our method, we conducted a comparative analysis with various typical algorithms using a widely recognized public dataset\footnote{//movingai.com/benchmarks/grids.html}. The results indicate that, on average, our method generates 320 topologically distinctive paths within a mere 100 milliseconds. This outcome underscores a significant enhancement in efficiency when compared to existing methods. To foster further research within the community, we have made the source code of our proposed algorithm publicly accessible\footnote{//joeyao-bit.github.io/posts/2023/09/07/}. We anticipate that this framework will significantly contribute to the development of more efficient topologically distinctive path planning, along with related trajectory optimization and motion planning endeavors.

In large-scale systems there are fundamental challenges when centralised techniques are used for task allocation. The number of interactions is limited by resource constraints such as on computation, storage, and network communication. We can increase scalability by implementing the system as a distributed task-allocation system, sharing tasks across many agents. However, this also increases the resource cost of communications and synchronisation, and is difficult to scale. In this paper we present four algorithms to solve these problems. The combination of these algorithms enable each agent to improve their task allocation strategy through reinforcement learning, while changing how much they explore the system in response to how optimal they believe their current strategy is, given their past experience. We focus on distributed agent systems where the agents' behaviours are constrained by resource usage limits, limiting agents to local rather than system-wide knowledge. We evaluate these algorithms in a simulated environment where agents are given a task composed of multiple subtasks that must be allocated to other agents with differing capabilities, to then carry out those tasks. We also simulate real-life system effects such as networking instability. Our solution is shown to solve the task allocation problem to 6.7% of the theoretical optimal within the system configurations considered. It provides 5x better performance recovery over no-knowledge retention approaches when system connectivity is impacted, and is tested against systems up to 100 agents with less than a 9% impact on the algorithms' performance.

We hypothesize that due to the greedy nature of learning in multi-modal deep neural networks, these models tend to rely on just one modality while under-fitting the other modalities. Such behavior is counter-intuitive and hurts the models' generalization, as we observe empirically. To estimate the model's dependence on each modality, we compute the gain on the accuracy when the model has access to it in addition to another modality. We refer to this gain as the conditional utilization rate. In the experiments, we consistently observe an imbalance in conditional utilization rates between modalities, across multiple tasks and architectures. Since conditional utilization rate cannot be computed efficiently during training, we introduce a proxy for it based on the pace at which the model learns from each modality, which we refer to as the conditional learning speed. We propose an algorithm to balance the conditional learning speeds between modalities during training and demonstrate that it indeed addresses the issue of greedy learning. The proposed algorithm improves the model's generalization on three datasets: Colored MNIST, Princeton ModelNet40, and NVIDIA Dynamic Hand Gesture.