Low rank matrix approximations appear in a number of scientific computing applications. We consider the Nystr\"{o}m method for approximating a positive semidefinite matrix $A$. In the case that $A$ is very large or its entries can only be accessed once, a single-pass version may be necessary. In this work, we perform a complete rounding error analysis of the single-pass Nystr\"{o}m method in two precisions, where the computation of the expensive matrix product with $A$ is assumed to be performed in the lower of the two precisions. Our analysis gives insight into how the sketching matrix and shift should be chosen to ensure stability, implementation aspects which have been commented on in the literature but not yet rigorously justified. We further develop a heuristic to determine how to pick the lower precision, which confirms the general intuition that the lower the desired rank of the approximation, the lower the precision we can use without detriment. We also demonstrate that our mixed precision Nystr\"{o}m method can be used to inexpensively construct limited memory preconditioners for the conjugate gradient method and derive a bound the condition number of the resulting preconditioned coefficient matrix. We present numerical experiments on a set of matrices with various spectral decays and demonstrate the utility of our mixed precision approach.
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This paper presents a numerical method for the simulation of elastic solid materials coupled to fluid inclusions. The application is motivated by the modeling of vascularized tissues and by problems in medical imaging which target the estimation of effective (i.e., macroscale) material properties, taking into account the influence of microscale dynamics, such as fluid flow in the microvasculature. The method is based on the recently proposed Reduced Lagrange Multipliers framework. In particular, the interface between solid and fluid domains is not resolved within the computational mesh for the elastic material but discretized independently, imposing the coupling condition via non-matching Lagrange multipliers. Exploiting the multiscale properties of the problem, the resulting Lagrange multipliers space is reduced to a lower-dimensional characteristic set. We present the details of the stability analysis of the resulting method considering a non-standard boundary condition that enforces a local deformation on the solid-fluid boundary. The method is validated with several numerical examples.
This work considers the low-rank approximation of a matrix $A(t)$ depending on a parameter $t$ in a compact set $D \subset \mathbb{R}^d$. Application areas that give rise to such problems include computational statistics and dynamical systems. Randomized algorithms are an increasingly popular approach for performing low-rank approximation and they usually proceed by multiplying the matrix with random dimension reduction matrices (DRMs). Applying such algorithms directly to $A(t)$ would involve different, independent DRMs for every $t$, which is not only expensive but also leads to inherently non-smooth approximations. In this work, we propose to use constant DRMs, that is, $A(t)$ is multiplied with the same DRM for every $t$. The resulting parameter-dependent extensions of two popular randomized algorithms, the randomized singular value decomposition and the generalized Nystr\"{o}m method, are computationally attractive, especially when $A(t)$ admits an affine linear decomposition with respect to $t$. We perform a probabilistic analysis for both algorithms, deriving bounds on the expected value as well as failure probabilities for the approximation error when using Gaussian random DRMs. Both, the theoretical results and numerical experiments, show that the use of constant DRMs does not impair their effectiveness; our methods reliably return quasi-best low-rank approximations.
Given a boolean formula $\Phi$(X, Y, Z), the Max\#SAT problem asks for finding a partial model on the set of variables X, maximizing its number of projected models over the set of variables Y. We investigate a strict generalization of Max\#SAT allowing dependencies for variables in X, effectively turning it into a synthesis problem. We show that this new problem, called DQMax\#SAT, subsumes both the DQBF and DSSAT problems. We provide a general resolution method, based on a reduction to Max\#SAT, together with two improvements for dealing with its inherent complexity. We further discuss a concrete application of DQMax\#SAT for symbolic synthesis of adaptive attackers in the field of program security. Finally, we report preliminary results obtained on the resolution of benchmark problems using a prototype DQMax\#SAT solver implementation.
We consider {\it local} balances of momentum and angular momentum for the incompressible Navier-Stokes equations. First, we formulate new weak forms of the physical balances (conservation laws) of these quantities, and prove they are equivalent to the usual conservation law formulations. We then show that continuous Galerkin discretizations of the Navier-Stokes equations using the EMAC form of the nonlinearity preserve discrete analogues of the weak form conservation laws, both in the Eulerian formulation and the Lagrangian formulation (which are not equivalent after discretizations). Numerical tests illustrate the new theory.
The study of hidden structures in data presents challenges in modern statistics and machine learning. We introduce the $\mathbf{gips}$ package in R, which identifies permutation subgroup symmetries in Gaussian vectors. $\mathbf{gips}$ serves two main purposes: exploratory analysis in discovering hidden permutation symmetries and estimating the covariance matrix under permutation symmetry. It is competitive to canonical methods in dimensionality reduction while providing a new interpretation of the results. $\mathbf{gips}$ implements a novel Bayesian model selection procedure within Gaussian vectors invariant under the permutation subgroup introduced in Graczyk, Ishi, Ko{\l}odziejek, Massam, Annals of Statistics, 50 (3) (2022).
Developing an efficient computational scheme for high-dimensional Bayesian variable selection in generalised linear models and survival models has always been a challenging problem due to the absence of closed-form solutions for the marginal likelihood. The RJMCMC approach can be employed to samples model and coefficients jointly, but effective design of the transdimensional jumps of RJMCMC can be challenge, making it hard to implement. Alternatively, the marginal likelihood can be derived using data-augmentation scheme e.g. Polya-gamma data argumentation for logistic regression) or through other estimation methods. However, suitable data-augmentation schemes are not available for every generalised linear and survival models, and using estimations such as Laplace approximation or correlated pseudo-marginal to derive marginal likelihood within a locally informed proposal can be computationally expensive in the "large n, large p" settings. In this paper, three main contributions are presented. Firstly, we present an extended Point-wise implementation of Adaptive Random Neighbourhood Informed proposal (PARNI) to efficiently sample models directly from the marginal posterior distribution in both generalised linear models and survival models. Secondly, in the light of the approximate Laplace approximation, we also describe an efficient and accurate estimation method for the marginal likelihood which involves adaptive parameters. Additionally, we describe a new method to adapt the algorithmic tuning parameters of the PARNI proposal by replacing the Rao-Blackwellised estimates with the combination of a warm-start estimate and an ergodic average. We present numerous numerical results from simulated data and 8 high-dimensional gene fine mapping data-sets to showcase the efficiency of the novel PARNI proposal compared to the baseline add-delete-swap proposal.
We study a variant of quantum hypothesis testing wherein an additional 'inconclusive' measurement outcome is added, allowing one to abstain from attempting to discriminate the hypotheses. The error probabilities are then conditioned on a successful attempt, with inconclusive trials disregarded. We completely characterise this task in both the single-shot and asymptotic regimes, providing exact formulas for the optimal error probabilities. In particular, we prove that the asymptotic error exponent of discriminating any two quantum states $\rho$ and $\sigma$ is given by the Hilbert projective metric $D_{\max}(\rho\|\sigma) + D_{\max}(\sigma \| \rho)$ in asymmetric hypothesis testing, and by the Thompson metric $\max \{ D_{\max}(\rho\|\sigma), D_{\max}(\sigma \| \rho) \}$ in symmetric hypothesis testing. This endows these two quantities with fundamental operational interpretations in quantum state discrimination. Our findings extend to composite hypothesis testing, where we show that the asymmetric error exponent with respect to any convex set of density matrices is given by a regularisation of the Hilbert projective metric. We apply our results also to quantum channels, showing that no advantage is gained by employing adaptive or even more general discrimination schemes over parallel ones, in both the asymmetric and symmetric settings. Our state discrimination results make use of no properties specific to quantum mechanics and are also valid in general probabilistic theories.
Acceptance-rejection (AR), Independent Metropolis Hastings (IMH) or importance sampling (IS) Monte Carlo (MC) simulation algorithms all involve computing ratios of probability density functions (pdfs). On the other hand, classifiers discriminate labeled samples produced by a mixture of two distributions and can be used for approximating the ratio of the two corresponding pdfs.This bridge between simulation and classification enables us to propose pdf-free versions of pdf-ratio-based simulation algorithms, where the ratio is replaced by a surrogate function computed via a classifier. From a probabilistic modeling perspective, our procedure involves a structured energy based model which can easily be trained and is compatible with the classical samplers.
This paper introduces two explicit schemes to sample matrices from Gibbs distributions on $\mathcal S^{n,p}_+$, the manifold of real positive semi-definite (PSD) matrices of size $n\times n$ and rank $p$. Given an energy function $\mathcal E:\mathcal S^{n,p}_+\to \mathbb{R}$ and certain Riemannian metrics $g$ on $\mathcal S^{n,p}_+$, these schemes rely on an Euler-Maruyama discretization of the Riemannian Langevin equation (RLE) with Brownian motion on the manifold. We present numerical schemes for RLE under two fundamental metrics on $\mathcal S^{n,p}_+$: (a) the metric obtained from the embedding of $\mathcal S^{n,p}_+ \subset \mathbb{R}^{n\times n} $; and (b) the Bures-Wasserstein metric corresponding to quotient geometry. We also provide examples of energy functions with explicit Gibbs distributions that allow numerical validation of these schemes.
For a singular integral equation on an interval of the real line, we study the behavior of the error of a delta-delta discretization. We show that the convergence is non-uniform, between order $O(h^{2})$ in the interior of the interval and a boundary layer where the consistency error does not tend to zero.
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