Automatic analysis of colonoscopy images has been an active field of research motivated by the importance of early detection of precancerous polyps. However, detecting polyps during the live examination can be challenging due to various factors such as variation of skills and experience among the endoscopists, lack of attentiveness, and fatigue leading to a high polyp miss-rate. Deep learning has emerged as a promising solution to this challenge as it can assist endoscopists in detecting and classifying overlooked polyps and abnormalities in real time. In addition to the algorithm's accuracy, transparency and interpretability are crucial to explaining the whys and hows of the algorithm's prediction. Further, most algorithms are developed in private data, closed source, or proprietary software, and methods lack reproducibility. Therefore, to promote the development of efficient and transparent methods, we have organized the "Medico automatic polyp segmentation (Medico 2020)" and "MedAI: Transparency in Medical Image Segmentation (MedAI 2021)" competitions. We present a comprehensive summary and analyze each contribution, highlight the strength of the best-performing methods, and discuss the possibility of clinical translations of such methods into the clinic. For the transparency task, a multi-disciplinary team, including expert gastroenterologists, accessed each submission and evaluated the team based on open-source practices, failure case analysis, ablation studies, usability and understandability of evaluations to gain a deeper understanding of the models' credibility for clinical deployment. Through the comprehensive analysis of the challenge, we not only highlight the advancements in polyp and surgical instrument segmentation but also encourage qualitative evaluation for building more transparent and understandable AI-based colonoscopy systems.
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To form precipitation datasets that are accurate and, at the same time, have high spatial densities, data from satellites and gauges are often merged in the literature. However, uncertainty estimates for the data acquired in this manner are scarcely provided, although the importance of uncertainty quantification in predictive modelling is widely recognized. Furthermore, the benefits that machine learning can bring to the task of providing such estimates have not been broadly realized and properly explored through benchmark experiments. The present study aims at filling in this specific gap by conducting the first benchmark tests on the topic. On a large dataset that comprises 15-year-long monthly data spanning across the contiguous United States, we extensively compared six learners that are, by their construction, appropriate for predictive uncertainty quantification. These are the quantile regression (QR), quantile regression forests (QRF), generalized random forests (GRF), gradient boosting machines (GBM), light gradient boosting machines (LightGBM) and quantile regression neural networks (QRNN). The comparison referred to the competence of the learners in issuing predictive quantiles at nine levels that facilitate a good approximation of the entire predictive probability distribution, and was primarily based on the quantile and continuous ranked probability skill scores. Three types of predictor variables (i.e., satellite precipitation variables, distances between a point of interest and satellite grid points, and elevation at a point of interest) were used in the comparison and were additionally compared with each other. This additional comparison was based on the explainable machine learning concept of feature importance. The results suggest that the order from the best to the worst of the learners for the task investigated is the following: LightGBM, QRF, GRF, GBM, QRNN and QR...
Randomness in the void distribution within a ductile metal complicates quantitative modeling of damage following the void growth to coalescence failure process. Though the sequence of micro-mechanisms leading to ductile failure is known from unit cell models, often based on assumptions of a regular distribution of voids, the effect of randomness remains a challenge. In the present work, mesoscale unit cell models, each containing an ensemble of four voids of equal size that are randomly distributed, are used to find statistical effects on the yield surface of the homogenized material. A yield locus is found based on a mean yield surface and a standard deviation of yield points obtained from 15 realizations of the four-void unit cells. It is found that the classical GTN model very closely agrees with the mean of the yield points extracted from the unit cell calculations with random void distributions, while the standard deviation $\textbf{S}$ varies with the imposed stress state. It is shown that the standard deviation is nearly zero for stress triaxialities $T\leq1/3$, while it rapidly increases for triaxialities above $T\approx 1$, reaching maximum values of about $\textbf{S}/\sigma_0\approx0.1$ at $T \approx 4$. At even higher triaxialities it decreases slightly. The results indicate that the dependence of the standard deviation on the stress state follows from variations in the deformation mechanism since a well-correlated variation is found for the volume fraction of the unit cell that deforms plastically at yield. Thus, the random void distribution activates different complex localization mechanisms at high stress triaxialities that differ from the ligament thinning mechanism forming the basis for the classical GTN model. A method for introducing the effect of randomness into the GTN continuum model is presented, and an excellent comparison to the unit cell yield locus is achieved.
We construct admissible polynomial meshes on piecewise polynomial or trigonometric curves of the complex plane, by mapping univariate Chebyshev points. Such meshes can be used for polynomial least-squares, for the extraction of Fekete-like and Leja-like interpolation sets, and also for the evaluation of their Lebesgue constants.
Numerical simulations of kinetic problems can become prohibitively expensive due to their large memory footprint and computational costs. A method that has proven to successfully reduce these costs is the dynamical low-rank approximation (DLRA). One key question when using DLRA methods is the construction of robust time integrators that preserve the invariances and associated conservation laws of the original problem. In this work, we demonstrate that the augmented basis update & Galerkin integrator (BUG) preserves solution invariances and the associated conservation laws when using a conservative truncation step and an appropriate time and space discretization. We present numerical comparisons to existing conservative integrators and discuss advantages and disadvantages
This study compares the performance of (1) fine-tuned models and (2) extremely large language models on the task of check-worthy claim detection. For the purpose of the comparison we composed a multilingual and multi-topical dataset comprising texts of various sources and styles. Building on this, we performed a benchmark analysis to determine the most general multilingual and multi-topical claim detector. We chose three state-of-the-art models in the check-worthy claim detection task and fine-tuned them. Furthermore, we selected three state-of-the-art extremely large language models without any fine-tuning. We made modifications to the models to adapt them for multilingual settings and through extensive experimentation and evaluation. We assessed the performance of all the models in terms of accuracy, recall, and F1-score in in-domain and cross-domain scenarios. Our results demonstrate that despite the technological progress in the area of natural language processing, the models fine-tuned for the task of check-worthy claim detection still outperform the zero-shot approaches in a cross-domain settings.
Nowadays, deep-learning image coding solutions have shown similar or better compression efficiency than conventional solutions based on hand-crafted transforms and spatial prediction techniques. These deep-learning codecs require a large training set of images and a training methodology to obtain a suitable model (set of parameters) for efficient compression. The training is performed with an optimization algorithm which provides a way to minimize the loss function. Therefore, the loss function plays a key role in the overall performance and includes a differentiable quality metric that attempts to mimic human perception. The main objective of this paper is to study the perceptual impact of several image quality metrics that can be used in the loss function of the training process, through a crowdsourcing subjective image quality assessment study. From this study, it is possible to conclude that the choice of the quality metric is critical for the perceptual performance of the deep-learning codec and that can vary depending on the image content.
This study explores the intersection of information technology-based self-monitoring (ITSM) and emotional responses in chronic care. It critiques the lack of theoretical depth in current ITSM research and proposes a dynamic emotion process theory to understand ITSM's impact on users' emotions. Utilizing computational grounded theory and machine learning analysis of hypertension app reviews, the research seeks to extend emotion theory by examining ITSM stimuli and their influence on emotional episodes, moving beyond discrete emotion models towards a continuous, nuanced understanding of emotional responses.
Blood vessel orientation as visualized in 3D medical images is an important descriptor of its geometry that can be used for centerline extraction and subsequent segmentation and visualization. Arteries appear at many scales and levels of tortuosity, and determining their exact orientation is challenging. Recent works have used 3D convolutional neural networks (CNNs) for this purpose, but CNNs are sensitive to varying vessel sizes and orientations. We present SIRE: a scale-invariant, rotation-equivariant estimator for local vessel orientation. SIRE is modular and can generalise due to symmetry preservation. SIRE consists of a gauge equivariant mesh CNN (GEM-CNN) operating on multiple nested spherical meshes with different sizes in parallel. The features on each mesh are a projection of image intensities within the corresponding sphere. These features are intrinsic to the sphere and, in combination with the GEM-CNN, lead to SO(3)-equivariance. Approximate scale invariance is achieved by weight sharing and use of a symmetric maximum function to combine multi-scale predictions. Hence, SIRE can be trained with arbitrarily oriented vessels with varying radii to generalise to vessels with a wide range of calibres and tortuosity. We demonstrate the efficacy of SIRE using three datasets containing vessels of varying scales: the vascular model repository (VMR), the ASOCA coronary artery set, and a set of abdominal aortic aneurysms (AAAs). We embed SIRE in a centerline tracker which accurately tracks AAAs, regardless of the data SIRE is trained with. Moreover, SIRE can be used to track coronary arteries, even when trained only with AAAs. In conclusion, by incorporating SO(3) and scale symmetries, SIRE can determine the orientations of vessels outside of the training domain, forming a robust and data-efficient solution to geometric analysis of blood vessels in 3D medical images.
In the realm of the Internet of Things (IoT), deploying deep learning models to process data generated or collected by IoT devices is a critical challenge. However, direct data transmission can cause network congestion and inefficient execution, given that IoT devices typically lack computation and communication capabilities. Centralized data processing in data centers is also no longer feasible due to concerns over data privacy and security. To address these challenges, we present an innovative Edge-assisted U-Shaped Split Federated Learning (EUSFL) framework, which harnesses the high-performance capabilities of edge servers to assist IoT devices in model training and optimization process. In this framework, we leverage Federated Learning (FL) to enable data holders to collaboratively train models without sharing their data, thereby enhancing data privacy protection by transmitting only model parameters. Additionally, inspired by Split Learning (SL), we split the neural network into three parts using U-shaped splitting for local training on IoT devices. By exploiting the greater computation capability of edge servers, our framework effectively reduces overall training time and allows IoT devices with varying capabilities to perform training tasks efficiently. Furthermore, we proposed a novel noise mechanism called LabelDP to ensure that data features and labels can securely resist reconstruction attacks, eliminating the risk of privacy leakage. Our theoretical analysis and experimental results demonstrate that EUSFL can be integrated with various aggregation algorithms, maintaining good performance across different computing capabilities of IoT devices, and significantly reducing training time and local computation overhead.
Data standardization has become one of the leading methods neuroimaging researchers rely on for data sharing and reproducibility. Data standardization promotes a common framework through which researchers can utilize others' data. Yet, as of today, formatting datasets that adhere to community best practices requires technical expertise involving coding and considerable knowledge of file formats and standards. We describe ezBIDS, a tool for converting neuroimaging data and associated metadata to the Brain Imaging Data Structure (BIDS) standard. ezBIDS provides four unique features: (1) No installation or programming requirements. (2) Handling of both imaging and task events data and metadata. (3) Automated inference and guidance for adherence to BIDS. (4) Multiple data management options: download BIDS data to local system, or transfer to OpenNeuro.org or brainlife.io. In sum, ezBIDS requires neither coding proficiency nor knowledge of BIDS and is the first BIDS tool to offer guided standardization, support for task events conversion, and interoperability with OpenNeuro and brainlife.io.
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