In this work we present denoiSplit, a method to tackle a new analysis task, i.e. the challenge of joint semantic image splitting and unsupervised denoising. This dual approach has important applications in fluorescence microscopy, where semantic image splitting has important applications but noise does generally hinder the downstream analysis of image content. Image splitting involves dissecting an image into its distinguishable semantic structures. We show that the current state-of-the-art method for this task struggles in the presence of image noise, inadvertently also distributing the noise across the predicted outputs. The method we present here can deal with image noise by integrating an unsupervised denoising sub-task. This integration results in improved semantic image unmixing, even in the presence of notable and realistic levels of imaging noise. A key innovation in denoiSplit is the use of specifically formulated noise models and the suitable adjustment of KL-divergence loss for the high-dimensional hierarchical latent space we are training. We showcase the performance of denoiSplit across 4 tasks on real-world microscopy images. Additionally, we perform qualitative and quantitative evaluations and compare results to existing benchmarks, demonstrating the effectiveness of using denoiSplit: a single Variational Splitting Encoder-Decoder (VSE) Network using two suitable noise models to jointly perform semantic splitting and denoising.
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In this paper we present an efficient active-set method for the solution of convex quadratic programming problems with general piecewise-linear terms in the objective, with applications to sparse approximations and risk-minimization. The algorithm is derived by combining a proximal method of multipliers (PMM) with a standard semismooth Newton method (SSN), and is shown to be globally convergent under minimal assumptions. Further local linear (and potentially superlinear) convergence is shown under standard additional conditions. The major computational bottleneck of the proposed approach arises from the solution of the associated SSN linear systems. These are solved using a Krylov-subspace method, accelerated by certain novel general-purpose preconditioners which are shown to be optimal with respect to the proximal penalty parameters. The preconditioners are easy to store and invert, since they exploit the structure of the nonsmooth terms appearing in the problem's objective to significantly reduce their memory requirements. We showcase the efficiency, robustness, and scalability of the proposed solver on a variety of problems arising in risk-averse portfolio selection, $L^1$-regularized partial differential equation constrained optimization, quantile regression, and binary classification via linear support vector machines. We provide computational evidence, on real-world datasets, to demonstrate the ability of the solver to efficiently and competitively handle a diverse set of medium- and large-scale optimization instances.
This paper contributes to the study of optimal experimental design for Bayesian inverse problems governed by partial differential equations (PDEs). We derive estimates for the parametric regularity of multivariate double integration problems over high-dimensional parameter and data domains arising in Bayesian optimal design problems. We provide a detailed analysis for these double integration problems using two approaches: a full tensor product and a sparse tensor product combination of quasi-Monte Carlo (QMC) cubature rules over the parameter and data domains. Specifically, we show that the latter approach significantly improves the convergence rate, exhibiting performance comparable to that of QMC integration of a single high-dimensional integral. Furthermore, we numerically verify the predicted convergence rates for an elliptic PDE problem with an unknown diffusion coefficient in two spatial dimensions, offering empirical evidence supporting the theoretical results and highlighting practical applicability.
We study how to construct a stochastic process on a finite interval with given `roughness' and finite joint moments of marginal distributions. We first extend Ciesielski's isomorphism along a general sequence of partitions, and provide a characterization of H\"older regularity of a function in terms of its Schauder coefficients. Using this characterization we provide a better (pathwise) estimator of H\"older exponent. As an additional application, we construct fake (fractional) Brownian motions with some path properties and finite moments of marginal distributions same as (fractional) Brownian motions. These belong to non-Gaussian families of stochastic processes which are statistically difficult to distinguish from real (fractional) Brownian motions.
The evaluation of text-generative vision-language models is a challenging yet crucial endeavor. By addressing the limitations of existing Visual Question Answering (VQA) benchmarks and proposing innovative evaluation methodologies, our research seeks to advance our understanding of these models' capabilities. We propose a novel VQA benchmark based on well-known visual classification datasets which allows a granular evaluation of text-generative vision-language models and their comparison with discriminative vision-language models. To improve the assessment of coarse answers on fine-grained classification tasks, we suggest using the semantic hierarchy of the label space to ask automatically generated follow-up questions about the ground-truth category. Finally, we compare traditional NLP and LLM-based metrics for the problem of evaluating model predictions given ground-truth answers. We perform a human evaluation study upon which we base our decision on the final metric. We apply our benchmark to a suite of vision-language models and show a detailed comparison of their abilities on object, action, and attribute classification. Our contributions aim to lay the foundation for more precise and meaningful assessments, facilitating targeted progress in the exciting field of vision-language modeling.
Ever since the link between nonlinear science and cryptography became apparent, the problem of applying chaotic dynamics to the construction of cryptographic systems has gained a broad audience and has been the subject of thousands of papers. Yet, the field has not found its place in mainstream cryptography, largely due to persistent weaknesses in the presented systems. The goal of this paper is to help remedy this problem in two ways. The first is by providing a new algorithm that can be used to attack -- and hence test the security of -- stream ciphers based on the iteration of a chaotic map of the interval. The second is to cast discrete dynamical systems problems in a modern cryptographic and complexity theoretic language, so that researchers working in chaos-based cryptography can begin designing cryptographic protocols that have a better chance of meeting the extreme standards of modern cryptography.
We propose an algorithm to construct optimal exact designs (EDs). Most of the work in the optimal regression design literature focuses on the approximate design (AD) paradigm due to its desired properties, including the optimality verification conditions derived by Kiefer (1959, 1974). ADs may have unbalanced weights, and practitioners may have difficulty implementing them with a designated run size $n$. Some EDs are constructed using rounding methods to get an integer number of runs at each support point of an AD, but this approach may not yield optimal results. To construct EDs, one may need to perform new combinatorial constructions for each $n$, and there is no unified approach to construct them. Therefore, we develop a systematic way to construct EDs for any given $n$. Our method can transform ADs into EDs while retaining high statistical efficiency in two steps. The first step involves constructing an AD by utilizing the convex nature of many design criteria. The second step employs a simulated annealing algorithm to search for the ED stochastically. Through several applications, we demonstrate the utility of our method for various design problems. Additionally, we show that the design efficiency approaches unity as the number of design points increases.
Distillation is the task of replacing a complicated machine learning model with a simpler model that approximates the original [BCNM06,HVD15]. Despite many practical applications, basic questions about the extent to which models can be distilled, and the runtime and amount of data needed to distill, remain largely open. To study these questions, we initiate a general theory of distillation, defining PAC-distillation in an analogous way to PAC-learning [Val84]. As applications of this theory: (1) we propose new algorithms to extract the knowledge stored in the trained weights of neural networks -- we show how to efficiently distill neural networks into succinct, explicit decision tree representations when possible by using the ``linear representation hypothesis''; and (2) we prove that distillation can be much cheaper than learning from scratch, and make progress on characterizing its complexity.
This thesis aims to study some of the mathematical challenges that arise in the analysis of statistical sequential decision-making algorithms for postoperative patients follow-up. Stochastic bandits (multiarmed, contextual) model the learning of a sequence of actions (policy) by an agent in an uncertain environment in order to maximise observed rewards. To learn optimal policies, bandit algorithms have to balance the exploitation of current knowledge and the exploration of uncertain actions. Such algorithms have largely been studied and deployed in industrial applications with large datasets, low-risk decisions and clear modelling assumptions, such as clickthrough rate maximisation in online advertising. By contrast, digital health recommendations call for a whole new paradigm of small samples, risk-averse agents and complex, nonparametric modelling. To this end, we developed new safe, anytime-valid concentration bounds, (Bregman, empirical Chernoff), introduced a new framework for risk-aware contextual bandits (with elicitable risk measures) and analysed a novel class of nonparametric bandit algorithms under weak assumptions (Dirichlet sampling). In addition to the theoretical guarantees, these results are supported by in-depth empirical evidence. Finally, as a first step towards personalised postoperative follow-up recommendations, we developed with medical doctors and surgeons an interpretable machine learning model to predict the long-term weight trajectories of patients after bariatric surgery.
We present ResMLP, an architecture built entirely upon multi-layer perceptrons for image classification. It is a simple residual network that alternates (i) a linear layer in which image patches interact, independently and identically across channels, and (ii) a two-layer feed-forward network in which channels interact independently per patch. When trained with a modern training strategy using heavy data-augmentation and optionally distillation, it attains surprisingly good accuracy/complexity trade-offs on ImageNet. We will share our code based on the Timm library and pre-trained models.
Deep learning constitutes a recent, modern technique for image processing and data analysis, with promising results and large potential. As deep learning has been successfully applied in various domains, it has recently entered also the domain of agriculture. In this paper, we perform a survey of 40 research efforts that employ deep learning techniques, applied to various agricultural and food production challenges. We examine the particular agricultural problems under study, the specific models and frameworks employed, the sources, nature and pre-processing of data used, and the overall performance achieved according to the metrics used at each work under study. Moreover, we study comparisons of deep learning with other existing popular techniques, in respect to differences in classification or regression performance. Our findings indicate that deep learning provides high accuracy, outperforming existing commonly used image processing techniques.
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