Coverings of undirected graphs are used in distributed computing, and unfoldings of directed graphs in semantics of programs. We study these two notions from a graph theoretical point of view so as to highlight their similarities, as they are both defined in terms of surjective graph homomorphisms. In particular, universal coverings and complete unfoldings are infinite trees that are regular if the initial graphs are finite. Regularity means that a tree has finitely many subtrees up to isomorphism. Two important theorems have been established by Leighton and Norris for coverings. We prove similar statements for unfoldings. Our study of the difficult proof of Leighton's Theorem lead us to generalize coverings and similarly, unfoldings, by attaching finite or infinite weights to edges of the covered or unfolded graphs. This generalization yields a canonical factorization of the universal covering of any finite graph, that (provably) does not exist without using weights. Introducing infinite weights provides us with finite descriptions of regular trees having nodes of countably infinite degree. We also generalize to weighted graphs and their coverings a classical factorization theorem of their characteristic polynomials.
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We present RETA (Relative Timing Analysis), a differential timing analysis technique to verify the impact of an update on the execution time of embedded software. Timing analysis is computationally expensive and labor intensive. Software updates render repeating the analysis from scratch a waste of resources and time, because their impact is inherently confined. To determine this boundary, in RETA we apply a slicing procedure that identifies all relevant code segments and a statement categorization that determines how to analyze each such line of code. We adapt a subset of RETA for integration into aiT, an industrial timing analysis tool, and also develop a complete implementation in a tool called DELTA. Based on staple benchmarks and realistic code updates from official repositories, we test the accuracy by analyzing the worst-case execution time (WCET) before and after an update, comparing the measures with the use of the unmodified aiT as well as real executions on embedded hardware. DELTA returns WCET information that ranges from exactly the WCET of real hardware to 148% of the new version's measured WCET. With the same benchmarks, the unmodified aiT estimates are 112% and 149% of the actual executions; therefore, even when DELTA is pessimistic, an industry-strength tool such as aiT cannot do better. Crucially, we also show that RETA decreases aiT's analysis time by 45% and its memory consumption by 8.9%, whereas removing RETA from DELTA, effectively rendering it a regular timing analysis tool, increases its analysis time by 27%.
The Independent Cutset problem asks whether there is a set of vertices in a given graph that is both independent and a cutset. Such a problem is $\textsf{NP}$-complete even when the input graph is planar and has maximum degree five. In this paper, we first present a $\mathcal{O}^*(1.4423^{n})$-time algorithm for the problem. We also show how to compute a minimum independent cutset (if any) in the same running time. Since the property of having an independent cutset is MSO$_1$-expressible, our main results are concerned with structural parameterizations for the problem considering parameters that are not bounded by a function of the clique-width of the input. We present $\textsf{FPT}$-time algorithms for the problem considering the following parameters: the dual of the maximum degree, the dual of the solution size, the size of a dominating set (where a dominating set is given as an additional input), the size of an odd cycle transversal, the distance to chordal graphs, and the distance to $P_5$-free graphs. We close by introducing the notion of $\alpha$-domination, which allows us to identify more fixed-parameter tractable and polynomial-time solvable cases.
Power flow analysis plays a crucial role in examining the electricity flow within a power system network. By performing power flow calculations, the system's steady-state variables, including voltage magnitude, phase angle at each bus, active/reactive power flow across branches, can be determined. While the widely used DC power flow model offers speed and robustness, it may yield inaccurate line flow results for certain transmission lines. This issue becomes more critical when dealing with renewable energy sources such as wind farms, which are often located far from the main grid. Obtaining precise line flow results for these critical lines is vital for next operations. To address these challenges, data-driven approaches leverage historical grid profiles. In this paper, a graph neural network (GNN) model is trained using historical power system data to predict power flow outcomes. The GNN model enables rapid estimation of line flows. A comprehensive performance analysis is conducted, comparing the proposed GNN-based power flow model with the traditional DC power flow model, as well as deep neural network (DNN) and convolutional neural network (CNN). The results on test systems demonstrate that the proposed GNN-based power flow model provides more accurate solutions with high efficiency comparing to benchmark models.
Twin-width is a structural width parameter introduced by Bonnet, Kim, Thomass\'e and Watrigant [FOCS 2020]. Very briefly, its essence is a gradual reduction (a contraction sequence) of the given graph down to a single vertex while maintaining limited difference of neighbourhoods of the vertices, and it can be seen as widely generalizing several other traditional structural parameters. Having such a sequence at hand allows to solve many otherwise hard problems efficiently. Our paper focuses on a comparison of twin-width to the more traditional tree-width on sparse graphs. Namely, we prove that if a graph $G$ of twin-width at most $2$ contains no $K_{t,t}$ subgraph for some integer $t$, then the tree-width of $G$ is bounded by a polynomial function of $t$. As a consequence, for any sparse graph class $\mathcal{C}$ we obtain a polynomial time algorithm which for any input graph $G \in \mathcal{C}$ either outputs a contraction sequence of width at most $c$ (where $c$ depends only on $\mathcal{C}$), or correctly outputs that $G$ has twin-width more than $2$. On the other hand, we present an easy example of a graph class of twin-width $3$ with unbounded tree-width, showing that our result cannot be extended to higher values of twin-width.
Given a graph, the shortest-path problem requires finding a sequence of edges with minimum cumulative length that connects a source vertex to a target vertex. We consider a variant of this classical problem in which the position of each vertex in the graph is a continuous decision variable constrained in a convex set, and the length of an edge is a convex function of the position of its endpoints. Problems of this form arise naturally in many areas, from motion planning of autonomous vehicles to optimal control of hybrid systems. The price for such a wide applicability is the complexity of this problem, which is easily seen to be NP-hard. Our main contribution is a strong and lightweight mixed-integer convex formulation based on perspective operators, that makes it possible to efficiently find globally optimal paths in large graphs and in high-dimensional spaces.
Knowledge graph embedding (KGE) is a increasingly popular technique that aims to represent entities and relations of knowledge graphs into low-dimensional semantic spaces for a wide spectrum of applications such as link prediction, knowledge reasoning and knowledge completion. In this paper, we provide a systematic review of existing KGE techniques based on representation spaces. Particularly, we build a fine-grained classification to categorise the models based on three mathematical perspectives of the representation spaces: (1) Algebraic perspective, (2) Geometric perspective, and (3) Analytical perspective. We introduce the rigorous definitions of fundamental mathematical spaces before diving into KGE models and their mathematical properties. We further discuss different KGE methods over the three categories, as well as summarise how spatial advantages work over different embedding needs. By collating the experimental results from downstream tasks, we also explore the advantages of mathematical space in different scenarios and the reasons behind them. We further state some promising research directions from a representation space perspective, with which we hope to inspire researchers to design their KGE models as well as their related applications with more consideration of their mathematical space properties.
The adaptive processing of structured data is a long-standing research topic in machine learning that investigates how to automatically learn a mapping from a structured input to outputs of various nature. Recently, there has been an increasing interest in the adaptive processing of graphs, which led to the development of different neural network-based methodologies. In this thesis, we take a different route and develop a Bayesian Deep Learning framework for graph learning. The dissertation begins with a review of the principles over which most of the methods in the field are built, followed by a study on graph classification reproducibility issues. We then proceed to bridge the basic ideas of deep learning for graphs with the Bayesian world, by building our deep architectures in an incremental fashion. This framework allows us to consider graphs with discrete and continuous edge features, producing unsupervised embeddings rich enough to reach the state of the art on several classification tasks. Our approach is also amenable to a Bayesian nonparametric extension that automatizes the choice of almost all model's hyper-parameters. Two real-world applications demonstrate the efficacy of deep learning for graphs. The first concerns the prediction of information-theoretic quantities for molecular simulations with supervised neural models. After that, we exploit our Bayesian models to solve a malware-classification task while being robust to intra-procedural code obfuscation techniques. We conclude the dissertation with an attempt to blend the best of the neural and Bayesian worlds together. The resulting hybrid model is able to predict multimodal distributions conditioned on input graphs, with the consequent ability to model stochasticity and uncertainty better than most works. Overall, we aim to provide a Bayesian perspective into the articulated research field of deep learning for graphs.
We hypothesize that due to the greedy nature of learning in multi-modal deep neural networks, these models tend to rely on just one modality while under-fitting the other modalities. Such behavior is counter-intuitive and hurts the models' generalization, as we observe empirically. To estimate the model's dependence on each modality, we compute the gain on the accuracy when the model has access to it in addition to another modality. We refer to this gain as the conditional utilization rate. In the experiments, we consistently observe an imbalance in conditional utilization rates between modalities, across multiple tasks and architectures. Since conditional utilization rate cannot be computed efficiently during training, we introduce a proxy for it based on the pace at which the model learns from each modality, which we refer to as the conditional learning speed. We propose an algorithm to balance the conditional learning speeds between modalities during training and demonstrate that it indeed addresses the issue of greedy learning. The proposed algorithm improves the model's generalization on three datasets: Colored MNIST, Princeton ModelNet40, and NVIDIA Dynamic Hand Gesture.
Data in Knowledge Graphs often represents part of the current state of the real world. Thus, to stay up-to-date the graph data needs to be updated frequently. To utilize information from Knowledge Graphs, many state-of-the-art machine learning approaches use embedding techniques. These techniques typically compute an embedding, i.e., vector representations of the nodes as input for the main machine learning algorithm. If a graph update occurs later on -- specifically when nodes are added or removed -- the training has to be done all over again. This is undesirable, because of the time it takes and also because downstream models which were trained with these embeddings have to be retrained if they change significantly. In this paper, we investigate embedding updates that do not require full retraining and evaluate them in combination with various embedding models on real dynamic Knowledge Graphs covering multiple use cases. We study approaches that place newly appearing nodes optimally according to local information, but notice that this does not work well. However, we find that if we continue the training of the old embedding, interleaved with epochs during which we only optimize for the added and removed parts, we obtain good results in terms of typical metrics used in link prediction. This performance is obtained much faster than with a complete retraining and hence makes it possible to maintain embeddings for dynamic Knowledge Graphs.
Graph Neural Networks (GNNs) have received considerable attention on graph-structured data learning for a wide variety of tasks. The well-designed propagation mechanism which has been demonstrated effective is the most fundamental part of GNNs. Although most of GNNs basically follow a message passing manner, litter effort has been made to discover and analyze their essential relations. In this paper, we establish a surprising connection between different propagation mechanisms with a unified optimization problem, showing that despite the proliferation of various GNNs, in fact, their proposed propagation mechanisms are the optimal solution optimizing a feature fitting function over a wide class of graph kernels with a graph regularization term. Our proposed unified optimization framework, summarizing the commonalities between several of the most representative GNNs, not only provides a macroscopic view on surveying the relations between different GNNs, but also further opens up new opportunities for flexibly designing new GNNs. With the proposed framework, we discover that existing works usually utilize naive graph convolutional kernels for feature fitting function, and we further develop two novel objective functions considering adjustable graph kernels showing low-pass or high-pass filtering capabilities respectively. Moreover, we provide the convergence proofs and expressive power comparisons for the proposed models. Extensive experiments on benchmark datasets clearly show that the proposed GNNs not only outperform the state-of-the-art methods but also have good ability to alleviate over-smoothing, and further verify the feasibility for designing GNNs with our unified optimization framework.
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