Feature alignment methods are used in many scientific disciplines for data pooling, annotation, and comparison. As an instance of a permutation learning problem, feature alignment presents significant statistical and computational challenges. In this work, we propose the covariance alignment model to study and compare various alignment methods and establish a minimax lower bound for covariance alignment that has a non-standard dimension scaling because of the presence of a nuisance parameter. This lower bound is in fact minimax optimal and is achieved by a natural quasi MLE. However, this estimator involves a search over all permutations which is computationally infeasible even when the problem has moderate size. To overcome this limitation, we show that the celebrated Gromov-Wasserstein algorithm from optimal transport which is more amenable to fast implementation even on large-scale problems is also minimax optimal. These results give the first statistical justification for the deployment of the Gromov-Wasserstein algorithm in practice.
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We revisit existing linear computation coding (LCC) algorithms, and introduce a new framework that measures the computational cost of computing multidimensional linear functions, not only in terms of the number of additions, but also with respect to their suitability for parallel processing. Utilizing directed acyclic graphs, which correspond to signal flow graphs in hardware, we propose a novel LCC algorithm that controls the trade-off between the total number of operations and their parallel executability. Numerical evaluations show that the proposed algorithm, constrained to a fully parallel structure, outperforms existing schemes.
Sonification is a data visualization technique which expresses data attributes via psychoacoustic parameters, which are non-speech audio signals used to convey information. This paper investigates the binary estimation of cognitive load induced by psychoacoustic parameters conveying the focus level of an astronomical image via Electroencephalogram (EEG) embeddings. Employing machine learning and deep learning methodologies, we demonstrate that EEG signals are reliable for (a) binary estimation of cognitive load, (b) isolating easy vs difficult visual-to-auditory perceptual mappings, and (c) capturing perceptual similarities among psychoacoustic parameters. Our key findings reveal that (1) EEG embeddings can reliably measure cognitive load, achieving a peak F1-score of 0.98; (2) Extreme focus levels are easier to detect via auditory mappings than intermediate ones, and (3) psychoacoustic parameters inducing comparable cognitive load levels tend to generate similar EEG encodings.
Screening documents is a tedious and time-consuming aspect of high-recall retrieval tasks, such as compiling a systematic literature review, where the goal is to identify all relevant documents for a topic. To help streamline this process, many Technology-Assisted Review (TAR) methods leverage active learning techniques to reduce the number of documents requiring review. BERT-based models have shown high effectiveness in text classification, leading to interest in their potential use in TAR workflows. In this paper, we investigate recent work that examined the impact of further pre-training epochs on the effectiveness and efficiency of a BERT-based active learning pipeline. We first report that we could replicate the original experiments on two specific TAR datasets, confirming some of the findings: importantly, that further pre-training is critical to high effectiveness, but requires attention in terms of selecting the correct training epoch. We then investigate the generalisability of the pipeline on a different TAR task, that of medical systematic reviews. In this context, we show that there is no need for further pre-training if a domain-specific BERT backbone is used within the active learning pipeline. This finding provides practical implications for using the studied active learning pipeline within domain-specific TAR tasks.
Information extraction techniques, including named entity recognition (NER) and relation extraction (RE), are crucial in many domains to support making sense of vast amounts of unstructured text data by identifying and connecting relevant information. Such techniques can assist researchers in extracting valuable insights. In this paper, we introduce the Entity-aware Masking for Biomedical Relation Extraction (EMBRE) method for biomedical relation extraction, as applied in the context of the BioRED challenge Task 1, in which human-annotated entities are provided as input. Specifically, we integrate entity knowledge into a deep neural network by pretraining the backbone model with an entity masking objective. We randomly mask named entities for each instance and let the model identify the masked entity along with its type. In this way, the model is capable of learning more specific knowledge and more robust representations. Then, we utilize the pre-trained model as our backbone to encode language representations and feed these representations into two multilayer perceptron (MLPs) to predict the logits for relation and novelty, respectively. The experimental results demonstrate that our proposed method can improve the performances of entity pair, relation and novelty extraction over our baseline.
Diffusion models have shown promising results in speech enhancement, using a task-adapted diffusion process for the conditional generation of clean speech given a noisy mixture. However, at test time, the neural network used for score estimation is called multiple times to solve the iterative reverse process. This results in a slow inference process and causes discretization errors that accumulate over the sampling trajectory. In this paper, we address these limitations through a two-stage training approach. In the first stage, we train the diffusion model the usual way using the generative denoising score matching loss. In the second stage, we compute the enhanced signal by solving the reverse process and compare the resulting estimate to the clean speech target using a predictive loss. We show that using this second training stage enables achieving the same performance as the baseline model using only 5 function evaluations instead of 60 function evaluations. While the performance of usual generative diffusion algorithms drops dramatically when lowering the number of function evaluations (NFEs) to obtain single-step diffusion, we show that our proposed method keeps a steady performance and therefore largely outperforms the diffusion baseline in this setting and also generalizes better than its predictive counterpart.
Answering questions that require reading texts in an image is challenging for current models. One key difficulty of this task is that rare, polysemous, and ambiguous words frequently appear in images, e.g., names of places, products, and sports teams. To overcome this difficulty, only resorting to pre-trained word embedding models is far from enough. A desired model should utilize the rich information in multiple modalities of the image to help understand the meaning of scene texts, e.g., the prominent text on a bottle is most likely to be the brand. Following this idea, we propose a novel VQA approach, Multi-Modal Graph Neural Network (MM-GNN). It first represents an image as a graph consisting of three sub-graphs, depicting visual, semantic, and numeric modalities respectively. Then, we introduce three aggregators which guide the message passing from one graph to another to utilize the contexts in various modalities, so as to refine the features of nodes. The updated nodes have better features for the downstream question answering module. Experimental evaluations show that our MM-GNN represents the scene texts better and obviously facilitates the performances on two VQA tasks that require reading scene texts.
InteractE: Improving Convolution-based Knowledge Graph Embeddings by Increasing Feature Interactions
Most existing knowledge graphs suffer from incompleteness, which can be alleviated by inferring missing links based on known facts. One popular way to accomplish this is to generate low-dimensional embeddings of entities and relations, and use these to make inferences. ConvE, a recently proposed approach, applies convolutional filters on 2D reshapings of entity and relation embeddings in order to capture rich interactions between their components. However, the number of interactions that ConvE can capture is limited. In this paper, we analyze how increasing the number of these interactions affects link prediction performance, and utilize our observations to propose InteractE. InteractE is based on three key ideas -- feature permutation, a novel feature reshaping, and circular convolution. Through extensive experiments, we find that InteractE outperforms state-of-the-art convolutional link prediction baselines on FB15k-237. Further, InteractE achieves an MRR score that is 9%, 7.5%, and 23% better than ConvE on the FB15k-237, WN18RR and YAGO3-10 datasets respectively. The results validate our central hypothesis -- that increasing feature interaction is beneficial to link prediction performance. We make the source code of InteractE available to encourage reproducible research.
The recent proliferation of knowledge graphs (KGs) coupled with incomplete or partial information, in the form of missing relations (links) between entities, has fueled a lot of research on knowledge base completion (also known as relation prediction). Several recent works suggest that convolutional neural network (CNN) based models generate richer and more expressive feature embeddings and hence also perform well on relation prediction. However, we observe that these KG embeddings treat triples independently and thus fail to cover the complex and hidden information that is inherently implicit in the local neighborhood surrounding a triple. To this effect, our paper proposes a novel attention based feature embedding that captures both entity and relation features in any given entity's neighborhood. Additionally, we also encapsulate relation clusters and multihop relations in our model. Our empirical study offers insights into the efficacy of our attention based model and we show marked performance gains in comparison to state of the art methods on all datasets.
We introduce a multi-task setup of identifying and classifying entities, relations, and coreference clusters in scientific articles. We create SciERC, a dataset that includes annotations for all three tasks and develop a unified framework called Scientific Information Extractor (SciIE) for with shared span representations. The multi-task setup reduces cascading errors between tasks and leverages cross-sentence relations through coreference links. Experiments show that our multi-task model outperforms previous models in scientific information extraction without using any domain-specific features. We further show that the framework supports construction of a scientific knowledge graph, which we use to analyze information in scientific literature.
Most existing works in visual question answering (VQA) are dedicated to improving the accuracy of predicted answers, while disregarding the explanations. We argue that the explanation for an answer is of the same or even more importance compared with the answer itself, since it makes the question and answering process more understandable and traceable. To this end, we propose a new task of VQA-E (VQA with Explanation), where the computational models are required to generate an explanation with the predicted answer. We first construct a new dataset, and then frame the VQA-E problem in a multi-task learning architecture. Our VQA-E dataset is automatically derived from the VQA v2 dataset by intelligently exploiting the available captions. We have conducted a user study to validate the quality of explanations synthesized by our method. We quantitatively show that the additional supervision from explanations can not only produce insightful textual sentences to justify the answers, but also improve the performance of answer prediction. Our model outperforms the state-of-the-art methods by a clear margin on the VQA v2 dataset.
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