The heterogeneous computing paradigm has led to the need for portable and efficient programming solutions that can leverage the capabilities of various hardware devices, such as NVIDIA, Intel, and AMD GPUs. This study evaluates the portability and performance of the SYCL and CUDA languages for one fundamental bioinformatics application (Smith-Waterman protein database search) across different GPU architectures, considering single and multi-GPU configurations from different vendors. The experimental work showed that, while both CUDA and SYCL versions achieve similar performance on NVIDIA devices, the latter demonstrated remarkable code portability to other GPU architectures, such as AMD and Intel. Furthermore, the architectural efficiency rates achieved on these devices were superior in 3 of the 4 cases tested. This brief study highlights the potential of SYCL as a viable solution for achieving both performance and portability in the heterogeneous computing ecosystem.
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The moving discontinuous Galerkin method with interface condition enforcement (MDG-ICE) is a high-order, r-adaptive method that treats the grid as a variable and weakly enforces the conservation law, constitutive law, and corresponding interface conditions in order to implicitly fit high-gradient flow features. In this paper, we introduce nonlinear solver strategies to more robustly and efficiently compute high-speed viscous flows. Specifically, we incorporate an anisotropic grid regularization based on the mesh-implied metric into the nonlinear least-squares solver that inhibits grid motion in directions with small element length scales. Furthermore, we develop an adaptive elementwise regularization strategy that locally scales the regularization terms as needed to maintain grid validity. We apply the proposed MDG-ICE formulation to test cases involving viscous shocks and/or boundary layers, including Mach 17.6 hypersonic viscous flow over a circular cylinder and Mach 5 hypersonic viscous flow over a sphere, which are very challenging test cases for conventional numerical schemes on simplicial grids. Even without artificial dissipation, the computed solutions are free from spurious oscillations and yield highly symmetric surface heat-flux profiles.
Computer graphics images (CGIs) are artificially generated by means of computer programs and are widely perceived under various scenarios, such as games, streaming media, etc. In practice, the quality of CGIs consistently suffers from poor rendering during production, inevitable compression artifacts during the transmission of multimedia applications, and low aesthetic quality resulting from poor composition and design. However, few works have been dedicated to dealing with the challenge of computer graphics image quality assessment (CGIQA). Most image quality assessment (IQA) metrics are developed for natural scene images (NSIs) and validated on databases consisting of NSIs with synthetic distortions, which are not suitable for in-the-wild CGIs. To bridge the gap between evaluating the quality of NSIs and CGIs, we construct a large-scale in-the-wild CGIQA database consisting of 6,000 CGIs (CGIQA-6k) and carry out the subjective experiment in a well-controlled laboratory environment to obtain the accurate perceptual ratings of the CGIs. Then, we propose an effective deep learning-based no-reference (NR) IQA model by utilizing both distortion and aesthetic quality representation. Experimental results show that the proposed method outperforms all other state-of-the-art NR IQA methods on the constructed CGIQA-6k database and other CGIQA-related databases. The database is released at //github.com/zzc-1998/CGIQA6K.
Because most of the scientific literature data is unmarked, it makes semantic representation learning based on unsupervised graph become crucial. At the same time, in order to enrich the features of scientific literature, a learning method of semantic representation of scientific literature based on adaptive features and graph neural network is proposed. By introducing the adaptive feature method, the features of scientific literature are considered globally and locally. The graph attention mechanism is used to sum the features of scientific literature with citation relationship, and give each scientific literature different feature weights, so as to better express the correlation between the features of different scientific literature. In addition, an unsupervised graph neural network semantic representation learning method is proposed. By comparing the mutual information between the positive and negative local semantic representation of scientific literature and the global graph semantic representation in the potential space, the graph neural network can capture the local and global information, thus improving the learning ability of the semantic representation of scientific literature. The experimental results show that the proposed learning method of semantic representation of scientific literature based on adaptive feature and graph neural network is competitive on the basis of scientific literature classification, and has achieved good results.
The widespread use of GitHub among software developers as a communal platform for coordinating software development has led to an abundant supply of publicly accessible data. Ever since the inception of Bitcoin, blockchain teams have incorporated the concept of open source code as a fundamental principle, thus making the majority of blockchain-based projects' code and version control data available for analysis. We define health in open source software projects to be a combination of the concepts of sustainability, robustness, and niche occupation. Sustainability is further divided into interest and engagement. This work uses exploratory factor analysis to identify latent constructs that are representative of general public interest or popularity in software, and software robustness within open source blockchain projects. We find that interest is a combination of stars, forks, and text mentions in the GitHub repository, while a second factor for robustness is composed of a criticality score, time since last updated, numerical rank, and geographic distribution. Cross validation of the dataset is carried out with good support for the model. A structural model of software health is proposed such that general interest positively influences developer engagement, which, in turn, positively predicts software robustness. The implications of structural equation modelling in the context of software engineering and next steps are discussed.
Proponents of software verification have argued that simpler code is easier to verify: that is, that verification tools issue fewer false positives and require less human intervention when analyzing simpler code. We empirically validate this assumption by comparing the number of warnings produced by four state-of-the-art verification tools on 211 snippets of Java code with 20 metrics of code comprehensibility from human subjects in six prior studies. Our experiments, based on a statistical (meta-)analysis, show that, in aggregate, there is a small correlation (r = 0.23) between understandability and verifiability. The results support the claim that easy-to-verify code is often easier to understand than code that requires more effort to verify. Our work has implications for the users and designers of verification tools and for future attempts to automatically measure code comprehensibility: verification tools may have ancillary benefits to understandability, and measuring understandability may require reasoning about semantic, not just syntactic, code properties.
Recent interest in integrated sensing and communications has led to the design of novel signal processing techniques to recover information from an overlaid radar-communications signal. Here, we focus on a spectral coexistence scenario, wherein the channels and transmit signals of both radar and communications systems are unknown to the common receiver. In this dual-blind deconvolution (DBD) problem, the receiver admits a multi-carrier wireless communications signal that is overlaid with the radar signal reflected off multiple targets. The communications and radar channels are represented by continuous-valued range-times or delays corresponding to multiple transmission paths and targets, respectively. Prior works addressed recovery of unknown channels and signals in this ill-posed DBD problem through atomic norm minimization but contingent on individual minimum separation conditions for radar and communications channels. In this paper, we provide an optimal joint separation condition using extremal functions from the Beurling-Selberg interpolation theory. Thereafter, we formulate DBD as a low-rank modified Hankel matrix retrieval and solve it via nuclear norm minimization. We estimate the unknown target and communications parameters from the recovered low-rank matrix using multiple signal classification (MUSIC) method. We show that the joint separation condition also guarantees that the underlying Vandermonde matrix for MUSIC is well-conditioned. Numerical experiments validate our theoretical findings.
Semantic text similarity plays an important role in software engineering tasks in which engineers are requested to clarify the semantics of descriptive labels (e.g., business terms, table column names) that are often consists of too short or too generic words and appears in their IT systems. We formulate this type of problem as a task of matching descriptive labels to glossary descriptions. We then propose a framework to leverage an existing semantic text similarity measurement (STS) and augment it using semantic label enrichment and set-based collective contextualization where the former is a method to retrieve sentences relevant to a given label and the latter is a method to compute similarity between two contexts each of which is derived from a set of texts (e.g., column names in the same table). We performed an experiment on two datasets derived from publicly available data sources. The result indicated that the proposed methods helped the underlying STS correctly match more descriptive labels with the descriptions.
With the advances of data-driven machine learning research, a wide variety of prediction problems have been tackled. It has become critical to explore how machine learning and specifically deep learning methods can be exploited to analyse healthcare data. A major limitation of existing methods has been the focus on grid-like data; however, the structure of physiological recordings are often irregular and unordered which makes it difficult to conceptualise them as a matrix. As such, graph neural networks have attracted significant attention by exploiting implicit information that resides in a biological system, with interactive nodes connected by edges whose weights can be either temporal associations or anatomical junctions. In this survey, we thoroughly review the different types of graph architectures and their applications in healthcare. We provide an overview of these methods in a systematic manner, organized by their domain of application including functional connectivity, anatomical structure and electrical-based analysis. We also outline the limitations of existing techniques and discuss potential directions for future research.
Deep neural networks (DNNs) are successful in many computer vision tasks. However, the most accurate DNNs require millions of parameters and operations, making them energy, computation and memory intensive. This impedes the deployment of large DNNs in low-power devices with limited compute resources. Recent research improves DNN models by reducing the memory requirement, energy consumption, and number of operations without significantly decreasing the accuracy. This paper surveys the progress of low-power deep learning and computer vision, specifically in regards to inference, and discusses the methods for compacting and accelerating DNN models. The techniques can be divided into four major categories: (1) parameter quantization and pruning, (2) compressed convolutional filters and matrix factorization, (3) network architecture search, and (4) knowledge distillation. We analyze the accuracy, advantages, disadvantages, and potential solutions to the problems with the techniques in each category. We also discuss new evaluation metrics as a guideline for future research.
Top-down visual attention mechanisms have been used extensively in image captioning and visual question answering (VQA) to enable deeper image understanding through fine-grained analysis and even multiple steps of reasoning. In this work, we propose a combined bottom-up and top-down attention mechanism that enables attention to be calculated at the level of objects and other salient image regions. This is the natural basis for attention to be considered. Within our approach, the bottom-up mechanism (based on Faster R-CNN) proposes image regions, each with an associated feature vector, while the top-down mechanism determines feature weightings. Applying this approach to image captioning, our results on the MSCOCO test server establish a new state-of-the-art for the task, achieving CIDEr / SPICE / BLEU-4 scores of 117.9, 21.5 and 36.9, respectively. Demonstrating the broad applicability of the method, applying the same approach to VQA we obtain first place in the 2017 VQA Challenge.
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