The analysis of survey data is a frequently arising issue in clinical trials, particularly when capturing quantities which are difficult to measure using, e.g., a technical device or a biochemical procedure. Typical examples are questionnaires about patient's well-being, pain, anxiety, quality of life or consent to an intervention. Data is captured on a discrete scale containing only a limited (usually three to ten) number of possible answers, of which the respondent has to pick the answer which fits best his personal opinion to the question. This data is generally located on an ordinal scale as answers can usually be arranged in an increasing order, e.g., "bad", "neutral", "good" for well-being or "none", "mild", "moderate", "severe" for pain. Since responses are often stored numerically for data processing purposes, analysis of survey data using ordinary linear regression (OLR) models seems to be natural. However, OLR assumptions are often not met as linear regression requires a constant variability of the response variable and can yield predictions out of the range of response categories. Moreover, in doing so, one only gains insights about the mean response which might, depending on the response distribution, not be very representative. In contrast, ordinal regression models are able to provide probability estimates for all response categories and thus yield information about the full response scale rather than just the mean. Although these methods are well described in the literature, they seem to be rarely applied to biomedical or survey data. In this paper, we give a concise overview about fundamentals of ordinal models, applications to a real data set, outline usage of state-of-the-art-software to do so and point out strengths, limitations and typical pitfalls. This article is a companion work to a current vignette-based structured interview study in paediatric anaesthesia.
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ACM/IEEE第23屆模型驅動工程語言和系統國際會議，是模型驅動軟件和系統工程的首要會議系列，由ACM-SIGSOFT和IEEE-TCSE支持組織。自1998年以來，模型涵蓋了建模的各個方面，從語言和方法到工具和應用程序。模特的參加者來自不同的背景，包括研究人員、學者、工程師和工業專業人士。MODELS 2019是一個論壇，參與者可以圍繞建模和模型驅動的軟件和系統交流前沿研究成果和創新實踐經驗。今年的版本將為建模社區提供進一步推進建模基礎的機會，并在網絡物理系統、嵌入式系統、社會技術系統、云計算、大數據、機器學習、安全、開源等新興領域提出建模的創新應用以及可持續性。
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When estimating an effect of an action with a randomized or observational study, that study is often not a random sample of the desired target population. Instead, estimates from that study can be transported to the target population. However, transportability methods generally rely on a positivity assumption, such that all relevant covariate patterns in the target population are also observed in the study sample. Strict eligibility criteria, particularly in the context of randomized trials, may lead to violations of this assumption. Two common approaches to address positivity violations are restricting the target population and restricting the relevant covariate set. As neither of these restrictions are ideal, we instead propose a synthesis of statistical and simulation models to address positivity violations. We propose corresponding g-computation and inverse probability weighting estimators. The restriction and synthesis approaches to addressing positivity violations are contrasted with a simulation experiment and an illustrative example in the context of sexually transmitted infection testing uptake. In both cases, the proposed synthesis approach accurately addressed the original research question when paired with a thoughtfully selected simulation model. Neither of the restriction approaches were able to accurately address the motivating question. As public health decisions must often be made with imperfect target population information, model synthesis is a viable approach given a combination of empirical data and external information based on the best available knowledge.
We propose a dynamic sensor selection approach for deep neural networks (DNNs), which is able to derive an optimal sensor subset selection for each specific input sample instead of a fixed selection for the entire dataset. This dynamic selection is jointly learned with the task model in an end-to-end way, using the Gumbel-Softmax trick to allow the discrete decisions to be learned through standard backpropagation. We then show how we can use this dynamic selection to increase the lifetime of a wireless sensor network (WSN) by imposing constraints on how often each node is allowed to transmit. We further improve performance by including a dynamic spatial filter that makes the task-DNN more robust against the fact that it now needs to be able to handle a multitude of possible node subsets. Finally, we explain how the selection of the optimal channels can be distributed across the different nodes in a WSN. We validate this method on a use case in the context of body-sensor networks, where we use real electroencephalography (EEG) sensor data to emulate an EEG sensor network. We analyze the resulting trade-offs between transmission load and task accuracy.
Several methods in survival analysis are based on the proportional hazards assumption. However, this assumption is very restrictive and often not justifiable in practice. Therefore, effect estimands that do not rely on the proportional hazards assumption are highly desirable in practical applications. One popular example for this is the restricted mean survival time (RMST). It is defined as the area under the survival curve up to a prespecified time point and, thus, summarizes the survival curve into a meaningful estimand. For two-sample comparisons based on the RMST, previous research found the inflation of the type I error of the asymptotic test for small samples and, therefore, a two-sample permutation test has already been developed. The first goal of the present paper is to further extend the permutation test for general factorial designs and general contrast hypotheses by considering a Wald-type test statistic and its asymptotic behavior. Additionally, a groupwise bootstrap approach is considered. Moreover, when a global test detects a significant difference by comparing the RMSTs of more than two groups, it is of interest which specific RMST differences cause the result. However, global tests do not provide this information. Therefore, multiple tests for the RMST are developed in a second step to infer several null hypotheses simultaneously. Hereby, the asymptotically exact dependence structure between the local test statistics is incorporated to gain more power. Finally, the small sample performance of the proposed global and multiple testing procedures is analyzed in simulations and illustrated in a real data example.
Uniform error estimates of a bi-fidelity method for a kinetic-fluid coupled model with random initial inputs in the fine particle regime are proved in this paper. Such a model is a system coupling the incompressible Navier-Stokes equations to the Vlasov-Fokker-Planck equations for a mixture of the flows with distinct particle sizes. The main analytic tool is the hypocoercivity analysis for the multi-phase Navier-Stokes-Vlasov-Fokker-Planck system with uncertainties, considering solutions in a perturbative setting near the global equilibrium. This allows us to obtain the error estimates in both kinetic and hydrodynamic regimes.
This paper addresses the problem of providing robust estimators under a functional logistic regression model. Logistic regression is a popular tool in classification problems with two populations. As in functional linear regression, regularization tools are needed to compute estimators for the functional slope. The traditional methods are based on dimension reduction or penalization combined with maximum likelihood or quasi--likelihood techniques and for that reason, they may be affected by misclassified points especially if they are associated to functional covariates with atypical behaviour. The proposal given in this paper adapts some of the best practices used when the covariates are finite--dimensional to provide reliable estimations. Under regularity conditions, consistency of the resulting estimators and rates of convergence for the predictions are derived. A numerical study illustrates the finite sample performance of the proposed method and reveals its stability under different contamination scenarios. A real data example is also presented.
The identification of primal variables and adjoint variables is usually done via indices in operator overloading algorithmic differentiation tools. One approach is a linear management scheme, which is easy to implement and supports memory optimization for copy statements. An alternative approach performs a reuse of indices, which requires more implementation effort but results in much smaller adjoint vectors. Therefore, the vector mode of algorithmic differentiation scales better with the reuse management scheme. In this paper, we present a novel approach that reuses the indices and allows the copy optimization, thus combining the advantages of the two aforementioned schemes. The new approach is compared to the known approaches on a simple synthetic test case and a real-world example using the computational fluid dynamics solver SU2.
Making inference with spatial extremal dependence models can be computationally burdensome since they involve intractable and/or censored likelihoods. Building on recent advances in likelihood-free inference with neural Bayes estimators, that is, neural networks that approximate Bayes estimators, we develop highly efficient estimators for censored peaks-over-threshold models that encode censoring information in the neural network architecture. Our new method provides a paradigm shift that challenges traditional censored likelihood-based inference methods for spatial extremal dependence models. Our simulation studies highlight significant gains in both computational and statistical efficiency, relative to competing likelihood-based approaches, when applying our novel estimators to make inference with popular extremal dependence models, such as max-stable, $r$-Pareto, and random scale mixture process models. We also illustrate that it is possible to train a single neural Bayes estimator for a general censoring level, precluding the need to retrain the network when the censoring level is changed. We illustrate the efficacy of our estimators by making fast inference on hundreds-of-thousands of high-dimensional spatial extremal dependence models to assess extreme particulate matter 2.5 microns or less in diameter (PM2.5) concentration over the whole of Saudi Arabia.
Finding similar patients is a common objective in precision medicine, facilitating treatment outcome assessment and clinical decision support. Choosing widely-available patient features and appropriate mathematical methods for similarity calculations is crucial. International Statistical Classification of Diseases and Related Health Problems (ICD) codes are used worldwide to encode diseases and are available for nearly all patients. Aggregated as sets consisting of primary and secondary diagnoses they can display a degree of comorbidity and reveal comorbidity patterns. It is possible to compute the similarity of patients based on their ICD codes by using semantic similarity algorithms. These algorithms have been traditionally evaluated using a single-term expert rated data set. However, real-word patient data often display varying degrees of documented comorbidities that might impair algorithm performance. To account for this, we present a scale term that considers documented comorbidity-variance. In this work, we compared the performance of 80 combinations of established algorithms in terms of semantic similarity based on ICD-code sets. The sets have been extracted from patients with a C25.X (pancreatic cancer) primary diagnosis and provide a variety of different combinations of ICD-codes. Using our scale term we yielded the best results with a combination of level-based information content, Leacock & Chodorow concept similarity and bipartite graph matching for the set similarities reaching a correlation of 0.75 with our expert's ground truth. Our results highlight the importance of accounting for comorbidity variance while demonstrating how well current semantic similarity algorithms perform.
Knowledge graphs (KGs) of real-world facts about entities and their relationships are useful resources for a variety of natural language processing tasks. However, because knowledge graphs are typically incomplete, it is useful to perform knowledge graph completion or link prediction, i.e. predict whether a relationship not in the knowledge graph is likely to be true. This paper serves as a comprehensive survey of embedding models of entities and relationships for knowledge graph completion, summarizing up-to-date experimental results on standard benchmark datasets and pointing out potential future research directions.
Graph representation learning for hypergraphs can be used to extract patterns among higher-order interactions that are critically important in many real world problems. Current approaches designed for hypergraphs, however, are unable to handle different types of hypergraphs and are typically not generic for various learning tasks. Indeed, models that can predict variable-sized heterogeneous hyperedges have not been available. Here we develop a new self-attention based graph neural network called Hyper-SAGNN applicable to homogeneous and heterogeneous hypergraphs with variable hyperedge sizes. We perform extensive evaluations on multiple datasets, including four benchmark network datasets and two single-cell Hi-C datasets in genomics. We demonstrate that Hyper-SAGNN significantly outperforms the state-of-the-art methods on traditional tasks while also achieving great performance on a new task called outsider identification. Hyper-SAGNN will be useful for graph representation learning to uncover complex higher-order interactions in different applications.
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