Computation of document similarity is a critical task in various NLP domains that has applications in deduplication, matching, and recommendation. Traditional approaches for document similarity computation include learning representations of documents and employing a similarity or a distance function over the embeddings. However, pairwise similarities and differences are not efficiently captured by individual representations. Graph representations such as Joint Concept Interaction Graph (JCIG) represent a pair of documents as a joint undirected weighted graph. JCIGs facilitate an interpretable representation of document pairs as a graph. However, JCIGs are undirected, and don't consider the sequential flow of sentences in documents. We propose two approaches to model document similarity by representing document pairs as a directed and sparse JCIG that incorporates sequential information. We propose two algorithms inspired by Supergenome Sorting and Hamiltonian Path that replace the undirected edges with directed edges. Our approach also sparsifies the graph to $O(n)$ edges from JCIG's worst case of $O(n^2)$. We show that our sparse directed graph model architecture consisting of a Siamese encoder and GCN achieves comparable results to the baseline on datasets not containing sequential information and beats the baseline by ten points on an instructional documents dataset containing sequential information.
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With the increasing amount of data available to scientists in disciplines as diverse as bioinformatics, physics, and remote sensing, scientific workflow systems are becoming increasingly important for composing and executing scalable data analysis pipelines. When writing such workflows, users need to specify the resources to be reserved for tasks so that sufficient resources are allocated on the target cluster infrastructure. Crucially, underestimating a task's memory requirements can result in task failures. Therefore, users often resort to overprovisioning, resulting in significant resource wastage and decreased throughput. In this paper, we propose a novel online method that uses monitoring time series data to predict task memory usage in order to reduce the memory wastage of scientific workflow tasks. Our method predicts a task's runtime, divides it into k equally-sized segments, and learns the peak memory value for each segment depending on the total file input size. We evaluate the prototype implementation of our method using workflows from the publicly available nf-core repository, showing an average memory wastage reduction of 29.48% compared to the best state-of-the-art approach.
Many scientific and engineering applications require fitting regression models that are nonlinear in the parameters. Advances in computer hardware and software in recent decades have made it easier to fit such models. Relative to fitting regression models that are linear in the parameters, however, fitting nonlinear regression models is more complicated. In particular, software like the $\texttt{nls}$ R function requires care in how the model is parameterized and how initial values are chosen for the maximum likelihood iterations. Often special diagnostics are needed to detect and suggest approaches for dealing with identifiability problems that can arise with such model fitting. When using Bayesian inference, there is the added complication of having to specify (often noninformative or weakly informative) prior distributions. Generally, the details for these tasks must be determined for each new nonlinear regression model. This paper provides a step-by-step procedure for specifying these details for any appropriate nonlinear regression model. Following the procedure will result in a numerically robust algorithm for fitting the nonlinear regression model. We illustrate the methods with three different nonlinear models that are used in the analysis of experimental fatigue data and we include two detailed numerical examples.
Point processes are finding growing applications in numerous fields, such as neuroscience, high frequency finance and social media. So classic problems of classification and clustering are of increasing interest. However, analytic study of misclassification error probability in multi-class classification has barely begun. In this paper, we tackle the multi-class likelihood classification problem for point processes and develop, for the first time, both asymptotic upper and lower bounds on the error rate in terms of computable pair-wise affinities. We apply these general results to classifying renewal processes. Under some technical conditions, we show that the bounds have exponential decay and give explicit associated constants. The results are illustrated with a non-trivial simulation.
Learned Index Structures (LIS) view a sorted index as a model that learns the data distribution, takes a data element key as input, and outputs the predicted position of the key. The original LIS can only handle lookup operations with no support for updates, rendering it impractical to use for typical workloads. To address this limitation, recent studies have focused on designing efficient dynamic learned indexes. ALEX, as the pioneering dynamic learned index structures, enables dynamism by incorporating a series of design choices, including adaptive key space partitioning, dynamic model retraining, and sophisticated engineering and policies that prioritize read/write performance. While these design choices offer improved average-case performance, the emphasis on flexibility and performance increases the attack surface by allowing adversarial behaviors that maximize ALEX's memory space and time complexity in worst-case scenarios. In this work, we present the first systematic investigation of algorithmic complexity attacks (ACAs) targeting the worst-case scenarios of ALEX. We introduce new ACAs that fall into two categories, space ACAs and time ACAs, which target the memory space and time complexity, respectively. First, our space ACA on data nodes exploits ALEX's gapped array layout and uses Multiple-Choice Knapsack (MCK) to generate an optimal adversarial insertion plan for maximizing the memory consumption at the data node level. Second, our space ACA on internal nodes exploits ALEX's catastrophic cost mitigation mechanism, causing an out-of-memory error with only a few hundred adversarial insertions. Third, our time ACA generates pathological insertions to increase the disparity between the actual key distribution and the linear models of data nodes, deteriorating the runtime performance by up to 1,641X compared to ALEX operating under legitimate workloads.
The rigid gang task model is based on the idea of executing multiple threads simultaneously on a fixed number of processors to increase efficiency and performance. Although there is extensive literature on global rigid gang scheduling, partitioned approaches have several practical advantages (e.g., task isolation and reduced scheduling overheads). In this paper, we propose a new partitioned scheduling strategy for rigid gang tasks, named strict partitioning. The method creates disjoint partitions of tasks and processors to avoid inter-partition interference. Moreover, it tries to assign tasks with similar volumes (i.e., parallelisms) to the same partition so that the intra-partition interference can be reduced. Within each partition, the tasks can be scheduled using any type of scheduler, which allows the use of a less pessimistic schedulability test. Extensive synthetic experiments and a case study based on Edge TPU benchmarks show that strict partitioning achieves better schedulability performance than state-of-the-art global gang schedulability analyses for both preemptive and non-preemptive rigid gang task sets.
Addresses occupy a niche location within the landscape of textual data, due to the positional importance carried by every word, and the geographical scope it refers to. The task of matching addresses happens everyday and is present in various fields like mail redirection, entity resolution, etc. Our work defines, and formalizes a framework to generate matching and mismatching pairs of addresses in the English language, and use it to evaluate various methods to automatically perform address matching. These methods vary widely from distance based approaches to deep learning models. By studying the Precision, Recall and Accuracy metrics of these approaches, we obtain an understanding of the best suited method for this setting of the address matching task.
Software engineering is a domain characterized by intricate decision-making processes, often relying on nuanced intuition and consultation. Recent advancements in deep learning have started to revolutionize software engineering practices through elaborate designs implemented at various stages of software development. In this paper, we present an innovative paradigm that leverages large language models (LLMs) throughout the entire software development process, streamlining and unifying key processes through natural language communication, thereby eliminating the need for specialized models at each phase. At the core of this paradigm lies ChatDev, a virtual chat-powered software development company that mirrors the established waterfall model, meticulously dividing the development process into four distinct chronological stages: designing, coding, testing, and documenting. Each stage engages a team of agents, such as programmers, code reviewers, and test engineers, fostering collaborative dialogue and facilitating a seamless workflow. The chat chain acts as a facilitator, breaking down each stage into atomic subtasks. This enables dual roles, allowing for proposing and validating solutions through context-aware communication, leading to efficient resolution of specific subtasks. The instrumental analysis of ChatDev highlights its remarkable efficacy in software generation, enabling the completion of the entire software development process in under seven minutes at a cost of less than one dollar. It not only identifies and alleviates potential vulnerabilities but also rectifies potential hallucinations while maintaining commendable efficiency and cost-effectiveness. The potential of ChatDev unveils fresh possibilities for integrating LLMs into the realm of software development.
The adaptive processing of structured data is a long-standing research topic in machine learning that investigates how to automatically learn a mapping from a structured input to outputs of various nature. Recently, there has been an increasing interest in the adaptive processing of graphs, which led to the development of different neural network-based methodologies. In this thesis, we take a different route and develop a Bayesian Deep Learning framework for graph learning. The dissertation begins with a review of the principles over which most of the methods in the field are built, followed by a study on graph classification reproducibility issues. We then proceed to bridge the basic ideas of deep learning for graphs with the Bayesian world, by building our deep architectures in an incremental fashion. This framework allows us to consider graphs with discrete and continuous edge features, producing unsupervised embeddings rich enough to reach the state of the art on several classification tasks. Our approach is also amenable to a Bayesian nonparametric extension that automatizes the choice of almost all model's hyper-parameters. Two real-world applications demonstrate the efficacy of deep learning for graphs. The first concerns the prediction of information-theoretic quantities for molecular simulations with supervised neural models. After that, we exploit our Bayesian models to solve a malware-classification task while being robust to intra-procedural code obfuscation techniques. We conclude the dissertation with an attempt to blend the best of the neural and Bayesian worlds together. The resulting hybrid model is able to predict multimodal distributions conditioned on input graphs, with the consequent ability to model stochasticity and uncertainty better than most works. Overall, we aim to provide a Bayesian perspective into the articulated research field of deep learning for graphs.
Invariant approaches have been remarkably successful in tackling the problem of domain generalization, where the objective is to perform inference on data distributions different from those used in training. In our work, we investigate whether it is possible to leverage domain information from the unseen test samples themselves. We propose a domain-adaptive approach consisting of two steps: a) we first learn a discriminative domain embedding from unsupervised training examples, and b) use this domain embedding as supplementary information to build a domain-adaptive model, that takes both the input as well as its domain into account while making predictions. For unseen domains, our method simply uses few unlabelled test examples to construct the domain embedding. This enables adaptive classification on any unseen domain. Our approach achieves state-of-the-art performance on various domain generalization benchmarks. In addition, we introduce the first real-world, large-scale domain generalization benchmark, Geo-YFCC, containing 1.1M samples over 40 training, 7 validation, and 15 test domains, orders of magnitude larger than prior work. We show that the existing approaches either do not scale to this dataset or underperform compared to the simple baseline of training a model on the union of data from all training domains. In contrast, our approach achieves a significant improvement.
Text Classification is an important and classical problem in natural language processing. There have been a number of studies that applied convolutional neural networks (convolution on regular grid, e.g., sequence) to classification. However, only a limited number of studies have explored the more flexible graph convolutional neural networks (e.g., convolution on non-grid, e.g., arbitrary graph) for the task. In this work, we propose to use graph convolutional networks for text classification. We build a single text graph for a corpus based on word co-occurrence and document word relations, then learn a Text Graph Convolutional Network (Text GCN) for the corpus. Our Text GCN is initialized with one-hot representation for word and document, it then jointly learns the embeddings for both words and documents, as supervised by the known class labels for documents. Our experimental results on multiple benchmark datasets demonstrate that a vanilla Text GCN without any external word embeddings or knowledge outperforms state-of-the-art methods for text classification. On the other hand, Text GCN also learns predictive word and document embeddings. In addition, experimental results show that the improvement of Text GCN over state-of-the-art comparison methods become more prominent as we lower the percentage of training data, suggesting the robustness of Text GCN to less training data in text classification.
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