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Creating large-scale and well-annotated datasets to train AI algorithms is crucial for automated tumor detection and localization. However, with limited resources, it is challenging to determine the best type of annotations when annotating massive amounts of unlabeled data. To address this issue, we focus on polyps in colonoscopy videos and pancreatic tumors in abdominal CT scans; both applications require significant effort and time for pixel-wise annotation due to the high dimensional nature of the data, involving either temporary or spatial dimensions. In this paper, we develop a new annotation strategy, termed Drag&Drop, which simplifies the annotation process to drag and drop. This annotation strategy is more efficient, particularly for temporal and volumetric imaging, than other types of weak annotations, such as per-pixel, bounding boxes, scribbles, ellipses, and points. Furthermore, to exploit our Drag&Drop annotations, we develop a novel weakly supervised learning method based on the watershed algorithm. Experimental results show that our method achieves better detection and localization performance than alternative weak annotations and, more importantly, achieves similar performance to that trained on detailed per-pixel annotations. Interestingly, we find that, with limited resources, allocating weak annotations from a diverse patient population can foster models more robust to unseen images than allocating per-pixel annotations for a small set of images. In summary, this research proposes an efficient annotation strategy for tumor detection and localization that is less accurate than per-pixel annotations but useful for creating large-scale datasets for screening tumors in various medical modalities.

Data preprocessing is a crucial part of any machine learning pipeline, and it can have a significant impact on both performance and training efficiency. This is especially evident when using deep neural networks for time series prediction and classification: real-world time series data often exhibit irregularities such as multi-modality, skewness and outliers, and the model performance can degrade rapidly if these characteristics are not adequately addressed. In this work, we propose the EDAIN (Extended Deep Adaptive Input Normalization) layer, a novel adaptive neural layer that learns how to appropriately normalize irregular time series data for a given task in an end-to-end fashion, instead of using a fixed normalization scheme. This is achieved by optimizing its unknown parameters simultaneously with the deep neural network using back-propagation. Our experiments, conducted using synthetic data, a credit default prediction dataset, and a large-scale limit order book benchmark dataset, demonstrate the superior performance of the EDAIN layer when compared to conventional normalization methods and existing adaptive time series preprocessing layers.

Reinforcement Learning algorithms that learn from human feedback (RLHF) need to be efficient in terms of statistical complexity, computational complexity, and query complexity. In this work, we consider the RLHF setting where the feedback is given in the format of preferences over pairs of trajectories. In the linear MDP model, by using randomization in algorithm design, we present an algorithm that is sample efficient (i.e., has near-optimal worst-case regret bounds) and has polynomial running time (i.e., computational complexity is polynomial with respect to relevant parameters). Our algorithm further minimizes the query complexity through a novel randomized active learning procedure. In particular, our algorithm demonstrates a near-optimal tradeoff between the regret bound and the query complexity. To extend the results to more general nonlinear function approximation, we design a model-based randomized algorithm inspired by the idea of Thompson sampling. Our algorithm minimizes Bayesian regret bound and query complexity, again achieving a near-optimal tradeoff between these two quantities. Computation-wise, similar to the prior Thompson sampling algorithms under the regular RL setting, the main computation primitives of our algorithm are Bayesian supervised learning oracles which have been heavily investigated on the empirical side when applying Thompson sampling algorithms to RL benchmark problems.

High-dimensional functional data has become increasingly prevalent in modern applications such as high-frequency financial data and neuroimaging data analysis. We investigate a class of high-dimensional linear regression models, where each predictor is a random element in an infinite dimensional function space, and the number of functional predictors p can potentially be much greater than the sample size n. Assuming that each of the unknown coefficient functions belongs to some reproducing kernel Hilbert space (RKHS), we regularized the fitting of the model by imposing a group elastic-net type of penalty on the RKHS norms of the coefficient functions. We show that our loss function is Gateaux sub-differentiable, and our functional elastic-net estimator exists uniquely in the product RKHS. Under suitable sparsity assumptions and a functional version of the irrepresentible condition, we establish the variable selection consistency property of our approach. The proposed method is illustrated through simulation studies and a real-data application from the Human Connectome Project.

With the ever-increasing execution scale of high performance computing (HPC) applications, vast amounts of data are being produced by scientific research every day. Error-bounded lossy compression has been considered a very promising solution to address the big-data issue for scientific applications because it can significantly reduce the data volume with low time cost meanwhile allowing users to control the compression errors with a specified error bound. The existing error-bounded lossy compressors, however, are all developed based on inflexible designs or compression pipelines, which cannot adapt to diverse compression quality requirements/metrics favored by different application users. In this paper, we propose a novel dynamic quality metric oriented error-bounded lossy compression framework, namely QoZ. The detailed contribution is three-fold. (1) We design a novel highly-parameterized multi-level interpolation-based data predictor, which can significantly improve the overall compression quality with the same compressed size. (2) We design the error-bounded lossy compression framework QoZ based on the adaptive predictor, which can auto-tune the critical parameters and optimize the compression result according to user-specified quality metrics during online compression. (3) We evaluate QoZ carefully by comparing its compression quality with multiple state-of-the-arts on various real-world scientific application datasets. Experiments show that, compared with the second-best lossy compressor, QoZ can achieve up to 70% compression ratio improvement under the same error bound, up to 150% compression ratio improvement under the same PSNR, or up to 270% compression ratio improvement under the same SSIM.

We propose a novel non-negative spherical relaxation for optimization problems over binary matrices with injectivity constraints, which in particular has applications in multi-matching and clustering. We relax respective binary matrix constraints to the (high-dimensional) non-negative sphere. To optimize our relaxed problem, we use a conditional power iteration method to iteratively improve the objective function, while at same time sweeping over a continuous scalar parameter that is (indirectly) related to the universe size (or number of clusters). Opposed to existing procedures that require to fix the integer universe size before optimization, our method automatically adjusts the analogous continuous parameter. Furthermore, while our approach shares similarities with spectral multi-matching and spectral clustering, our formulation has the strong advantage that we do not rely on additional post-processing procedures to obtain binary results. Our method shows compelling results in various multi-matching and clustering settings, even when compared to methods that use the ground truth universe size (or number of clusters).

We introduce two new stochastic conjugate frameworks for a class of nonconvex and possibly also nonsmooth optimization problems. These frameworks are built upon Stochastic Recursive Gradient Algorithm (SARAH) and we thus refer to them as Acc-Prox-CG-SARAH and Acc-Prox-CG-SARAH-RS, respectively. They are efficiently accelerated, easy to implement, tune free and can be smoothly extended and modified. We devise a deterministic restart scheme for stochastic optimization and apply it in our second stochastic conjugate framework, which serves the key difference between the two approaches. In addition, we apply the ProbAbilistic Gradient Estimator (PAGE) and further develop a practical variant, denoted as Acc-Prox-CG-SARAH-ST, in order to reduce potential computational overhead. We provide comprehensive and rigorous convergence analysis for all three approaches and establish linear convergence rates for unconstrained minimization problem with nonconvex and nonsmooth objective functions. Experiments have demonstrated that Acc-Prox-CG-SARAH and Acc-Prox-CG-SARAH-RS both outperform state-of-art methods consistently and Acc-Prox-CG-SARAH-ST can as well achieve comparable convergence speed. In terms of theory and experiments, we verify the strong computational efficiency of the deterministic restart scheme in stochastic optimization methods.

Multiobjective evolutionary algorithms (MOEAs) are major methods for solving multiobjective optimization problems (MOPs). Many MOEAs have been proposed in the past decades, of which the operators need carefully handcrafted design with domain knowledge. Recently, some attempts have been made to replace the manually designed operators in MOEAs with learning-based operators (e.g., neural network models). However, much effort is still required for designing and training such models, and the learned operators might not generalize well to solve new problems. To tackle the above challenges, this work investigates a novel approach that leverages the powerful large language model (LLM) to design MOEA operators. With proper prompt engineering, we successfully let a general LLM serve as a black-box search operator for decomposition-based MOEA (MOEA/D) in a zero-shot manner. In addition, by learning from the LLM behavior, we further design an explicit white-box operator with randomness and propose a new version of decomposition-based MOEA, termed MOEA/D-LO. Experimental studies on different test benchmarks show that our proposed method can achieve competitive performance with widely used MOEAs. It is also promising to see the operator only learned from a few instances can have robust generalization performance on unseen problems with quite different patterns and settings. The results reveal the potential benefits of using pre-trained LLMs in the design of MOEAs.

Named entity recognition (NER) is the task to identify text spans that mention named entities, and to classify them into predefined categories such as person, location, organization etc. NER serves as the basis for a variety of natural language applications such as question answering, text summarization, and machine translation. Although early NER systems are successful in producing decent recognition accuracy, they often require much human effort in carefully designing rules or features. In recent years, deep learning, empowered by continuous real-valued vector representations and semantic composition through nonlinear processing, has been employed in NER systems, yielding stat-of-the-art performance. In this paper, we provide a comprehensive review on existing deep learning techniques for NER. We first introduce NER resources, including tagged NER corpora and off-the-shelf NER tools. Then, we systematically categorize existing works based on a taxonomy along three axes: distributed representations for input, context encoder, and tag decoder. Next, we survey the most representative methods for recent applied techniques of deep learning in new NER problem settings and applications. Finally, we present readers with the challenges faced by NER systems and outline future directions in this area.

High spectral dimensionality and the shortage of annotations make hyperspectral image (HSI) classification a challenging problem. Recent studies suggest that convolutional neural networks can learn discriminative spatial features, which play a paramount role in HSI interpretation. However, most of these methods ignore the distinctive spectral-spatial characteristic of hyperspectral data. In addition, a large amount of unlabeled data remains an unexploited gold mine for efficient data use. Therefore, we proposed an integration of generative adversarial networks (GANs) and probabilistic graphical models for HSI classification. Specifically, we used a spectral-spatial generator and a discriminator to identify land cover categories of hyperspectral cubes. Moreover, to take advantage of a large amount of unlabeled data, we adopted a conditional random field to refine the preliminary classification results generated by GANs. Experimental results obtained using two commonly studied datasets demonstrate that the proposed framework achieved encouraging classification accuracy using a small number of data for training.