Behavioural metrics provide a quantitative refinement of classical two-valued behavioural equivalences on systems with quantitative data, such as metric or probabilistic transition systems. In analogy to the classical linear-time/branching-time spectrum of two-valued behavioural equivalences on transition systems, behavioural metrics come in various degrees of granularity, depending on the observer's ability to interact with the system. Graded monads have been shown to provide a unifying framework for spectra of behavioural equivalences. Here, we transfer this principle to spectra of behavioural metrics, working at a coalgebraic level of generality, that is, parametrically in the system type. In the ensuing development of quantitative graded semantics, we discuss presentations of graded monads on the category of metric spaces in terms of graded quantitative equational theories. Moreover, we obtain a canonical generic notion of invariant real-valued modal logic, and provide criteria for such logics to be expressive in the sense that logical distance coincides with the respective behavioural distance. We thus recover recent expressiveness results for coalgebraic branching-time metrics and for trace distance in metric transition systems; moreover, we obtain a new expressiveness result for trace semantics of fuzzy transition systems. We also provide a number of salient negative results. In particular, we show that trace distance on probabilistic metric transition systems does not admit a characteristic real-valued modal logic at all.
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In the past decades, automated high-content microscopy demonstrated its ability to deliver large quantities of image-based data powering the versatility of phenotypic drug screening and systems biology applications. However, as the sizes of image-based datasets grew, it became infeasible for humans to control, avoid and overcome the presence of imaging and sample preparation artefacts in the images. While novel techniques like machine learning and deep learning may address these shortcomings through generative image inpainting, when applied to sensitive research data this may come at the cost of undesired image manipulation. Undesired manipulation may be caused by phenomena such as neural hallucinations, to which some artificial neural networks are prone. To address this, here we evaluate the state-of-the-art inpainting methods for image restoration in a high-content fluorescence microscopy dataset of cultured cells with labelled nuclei. We show that architectures like DeepFill V2 and Edge Connect can faithfully restore microscopy images upon fine-tuning with relatively little data. Our results demonstrate that the area of the region to be restored is of higher importance than shape. Furthermore, to control for the quality of restoration, we propose a novel phenotype-preserving metric design strategy. In this strategy, the size and count of the restored biological phenotypes like cell nuclei are quantified to penalise undesirable manipulation. We argue that the design principles of our approach may also generalise to other applications.
We introduce a new information-geometric structure associated with the dynamics on discrete objects such as graphs and hypergraphs. The presented setup consists of two dually flat structures built on the vertex and edge spaces, respectively. The former is the conventional duality between density and potential, e.g., the probability density and its logarithmic form induced by a convex thermodynamic function. The latter is the duality between flux and force induced by a convex and symmetric dissipation function, which drives the dynamics of the density. These two are connected topologically by the homological algebraic relation induced by the underlying discrete objects. The generalized gradient flow in this doubly dual flat structure is an extension of the gradient flows on Riemannian manifolds, which include Markov jump processes and nonlinear chemical reaction dynamics as well as the natural gradient and mirror descent. The information-geometric projections on this doubly dual flat structure lead to information-geometric extensions of the Helmholtz-Hodge decomposition and the Otto structure in $L^{2}$ Wasserstein geometry. The structure can be extended to non-gradient nonequilibrium flows, from which we also obtain the induced dually flat structure on cycle spaces. This abstract but general framework can extend the applicability of information geometry to various problems of linear and nonlinear dynamics.
The emerging theory of graph limits exhibits an analytic perspective on graphs, showing that many important concepts and tools in graph theory and its applications can be described more naturally (and sometimes proved more easily) in analytic language. We extend the theory of graph limits to the ordered setting, presenting a limit object for dense vertex-ordered graphs, which we call an orderon. As a special case, this yields limit objects for matrices whose rows and columns are ordered, and for dynamic graphs that expand (via vertex insertions) over time. Along the way, we devise an ordered locality-preserving variant of the cut distance between ordered graphs, showing that two graphs are close with respect to this distance if and only if they are similar in terms of their ordered subgraph frequencies. We show that the space of orderons is compact with respect to this distance notion, which is key to a successful analysis of combinatorial objects through their limits. We derive several applications of the ordered limit theory in extremal combinatorics, sampling, and property testing in ordered graphs. In particular, we prove a new ordered analogue of the well-known result by Alon and Stav [RS\&A'08] on the furthest graph from a hereditary property; this is the first known result of this type in the ordered setting. Unlike the unordered regime, here the random graph model $G(n, p)$ with an ordering over the vertices is not always asymptotically the furthest from the property for some $p$. However, using our ordered limit theory, we show that random graphs generated by a stochastic block model, where the blocks are consecutive in the vertex ordering, are (approximately) the furthest. Additionally, we describe an alternative analytic proof of the ordered graph removal lemma [Alon et al., FOCS'17].
Population size estimation based on the capture-recapture experiment is an interesting problem in various fields including epidemiology, criminology, demography, etc. In many real-life scenarios, there exists inherent heterogeneity among the individuals and dependency between capture and recapture attempts. A novel trivariate Bernoulli model is considered to incorporate these features, and the Bayesian estimation of the model parameters is suggested using data augmentation. Simulation results show robustness under model misspecification and the superiority of the performance of the proposed method over existing competitors. The method is applied to analyse real case studies on epidemiological surveillance. The results provide interesting insight on the heterogeneity and dependence involved in the capture-recapture mechanism. The methodology proposed can assist in effective decision-making and policy formulation.
The use of Dynamic Epistemic Logic (DEL) in multi-agent planning has led to a widely adopted action formalism that can handle nondeterminism, partial observability and arbitrary knowledge nesting. As such expressive power comes at the cost of undecidability, several decidable fragments have been isolated, mainly based on syntactic restrictions of the action formalism. In this paper, we pursue a novel semantic approach to achieve decidability. Namely, rather than imposing syntactical constraints, the semantic approach focuses on the axioms of the logic for epistemic planning. Specifically, we augment the logic of knowledge S5$_n$ and with an interaction axiom called (knowledge) commutativity, which controls the ability of agents to unboundedly reason on the knowledge of other agents. We then provide a threefold contribution. First, we show that the resulting epistemic planning problem is decidable. In doing so, we prove that our framework admits a finitary non-fixpoint characterization of common knowledge, which is of independent interest. Second, we study different generalizations of the commutativity axiom, with the goal of obtaining decidability for more expressive fragments of DEL. Finally, we show that two well-known epistemic planning systems based on action templates, when interpreted under the setting of knowledge, conform to the commutativity axiom, hence proving their decidability.
The generation of energy-efficient and dynamic-aware robot motions that satisfy constraints such as joint limits, self-collisions, and collisions with the environment remains a challenge. In this context, Riemannian geometry offers promising solutions by identifying robot motions with geodesics on the so-called configuration space manifold. While this manifold naturally considers the intrinsic robot dynamics, constraints such as joint limits, self-collisions, and collisions with the environment remain overlooked. In this paper, we propose a modification of the Riemannian metric of the configuration space manifold allowing for the generation of robot motions as geodesics that efficiently avoid given regions. We introduce a class of Riemannian metrics based on barrier functions that guarantee strict region avoidance by systematically generating accelerations away from no-go regions in joint and task space. We evaluate the proposed Riemannian metric to generate energy-efficient, dynamic-aware, and collision-free motions of a humanoid robot as geodesics and sequences thereof.
The Koopman operator has become an essential tool for data-driven analysis, prediction and control of complex systems, the main reason being the enormous potential of identifying linear function space representations of nonlinear dynamics from measurements. Until now, the situation where for large-scale systems, we (i) only have access to partial observations (i.e., measurements, as is very common for experimental data) or (ii) deliberately perform coarse graining (for efficiency reasons) has not been treated to its full extent. In this paper, we address the pitfall associated with this situation, that the classical EDMD algorithm does not automatically provide a Koopman operator approximation for the underlying system if we do not carefully select the number of observables. Moreover, we show that symmetries in the system dynamics can be carried over to the Koopman operator, which allows us to massively increase the model efficiency. We also briefly draw a connection to domain decomposition techniques for partial differential equations and present numerical evidence using the Kuramoto--Sivashinsky equation.
Promoting behavioural diversity is critical for solving games with non-transitive dynamics where strategic cycles exist, and there is no consistent winner (e.g., Rock-Paper-Scissors). Yet, there is a lack of rigorous treatment for defining diversity and constructing diversity-aware learning dynamics. In this work, we offer a geometric interpretation of behavioural diversity in games and introduce a novel diversity metric based on \emph{determinantal point processes} (DPP). By incorporating the diversity metric into best-response dynamics, we develop \emph{diverse fictitious play} and \emph{diverse policy-space response oracle} for solving normal-form games and open-ended games. We prove the uniqueness of the diverse best response and the convergence of our algorithms on two-player games. Importantly, we show that maximising the DPP-based diversity metric guarantees to enlarge the \emph{gamescape} -- convex polytopes spanned by agents' mixtures of strategies. To validate our diversity-aware solvers, we test on tens of games that show strong non-transitivity. Results suggest that our methods achieve much lower exploitability than state-of-the-art solvers by finding effective and diverse strategies.
Few-shot Learning aims to learn classifiers for new classes with only a few training examples per class. Existing meta-learning or metric-learning based few-shot learning approaches are limited in handling diverse domains with various number of labels. The meta-learning approaches train a meta learner to predict weights of homogeneous-structured task-specific networks, requiring a uniform number of classes across tasks. The metric-learning approaches learn one task-invariant metric for all the tasks, and they fail if the tasks diverge. We propose to deal with these limitations with meta metric learning. Our meta metric learning approach consists of task-specific learners, that exploit metric learning to handle flexible labels, and a meta learner, that discovers good parameters and gradient decent to specify the metrics in task-specific learners. Thus the proposed model is able to handle unbalanced classes as well as to generate task-specific metrics. We test our approach in the `$k$-shot $N$-way' few-shot learning setting used in previous work and new realistic few-shot setting with diverse multi-domain tasks and flexible label numbers. Experiments show that our approach attains superior performances in both settings.
The key issue of few-shot learning is learning to generalize. In this paper, we propose a large margin principle to improve the generalization capacity of metric based methods for few-shot learning. To realize it, we develop a unified framework to learn a more discriminative metric space by augmenting the softmax classification loss function with a large margin distance loss function for training. Extensive experiments on two state-of-the-art few-shot learning models, graph neural networks and prototypical networks, show that our method can improve the performance of existing models substantially with very little computational overhead, demonstrating the effectiveness of the large margin principle and the potential of our method.
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