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Time-lapse fluorescent microscopy (TLFM) combined with predictive mathematical modelling is a powerful tool to study the inherently dynamic processes of life on the single-cell level. Such experiments are costly, complex and labour intensive. A complimentary approach and a step towards in silico experimentation, is to synthesise the imagery itself. Here, we propose Multi-StyleGAN as a descriptive approach to simulate time-lapse fluorescence microscopy imagery of living cells, based on a past experiment. This novel generative adversarial network synthesises a multi-domain sequence of consecutive timesteps. We showcase Multi-StyleGAN on imagery of multiple live yeast cells in microstructured environments and train on a dataset recorded in our laboratory. The simulation captures underlying biophysical factors and time dependencies, such as cell morphology, growth, physical interactions, as well as the intensity of a fluorescent reporter protein. An immediate application is to generate additional training and validation data for feature extraction algorithms or to aid and expedite development of advanced experimental techniques such as online monitoring or control of cells. Code and dataset is available at //git.rwth-aachen.de/bcs/projects/tp/multi-stylegan.

Grasping objects whose physical properties are unknown is still a great challenge in robotics. Most solutions rely entirely on visual data to plan the best grasping strategy. However, to match human abilities and be able to reliably pick and hold unknown objects, the integration of an artificial sense of touch in robotic systems is pivotal. This paper describes a novel model-based slip detection pipeline that can predict possibly failing grasps in real-time and signal a necessary increase in grip force. As such, the slip detector does not rely on manually collected data, but exploits physics to generalize across different tasks. To evaluate the approach, a state-of-the-art vision-based tactile sensor that accurately estimates distributed forces was integrated into a grasping setup composed of a six degrees-of-freedom cobot and a two-finger gripper. Results show that the system can reliably predict slip while manipulating objects of different shapes, materials, and weights. The sensor can detect both translational and rotational slip in various scenarios, making it suitable to improve the stability of a grasp.

Measurement noise is an integral part while collecting data of a physical process. Thus, noise removal is a necessary step to draw conclusions from these data, and it often becomes quite essential to construct dynamical models using these data. We discuss a methodology to learn differential equation(s) using noisy and sparsely sampled measurements. In our methodology, the main innovation can be seen in of integration of deep neural networks with a classical numerical integration method. Precisely, we aim at learning a neural network that implicitly represents the data and an additional neural network that models the vector fields of the dependent variables. We combine these two networks by enforcing the constraint that the data at the next time-steps can be given by following a numerical integration scheme such as the fourth-order Runge-Kutta scheme. The proposed framework to learn a model predicting the vector field is highly effective under noisy measurements. The approach can handle scenarios where dependent variables are not available at the same temporal grid. We demonstrate the effectiveness of the proposed method to learning models using data obtained from various differential equations. The proposed approach provides a promising methodology to learn dynamic models, where the first-principle understanding remains opaque.

As a consequence of Bloch's theorem, the numerical computation of the fermionic ground state density matrices and energies of periodic Schrodinger operators involves integrals over the Brillouin zone. These integrals are difficult to compute numerically in metals due to discontinuities in the integrand. We perform an error analysis of several widely-used quadrature rules and smearing methods for Brillouin zone integration. We precisely identify the assumptions implicit in these methods and rigorously prove error bounds. Numerical results for two-dimensional periodic systems are also provided. Our results shed light on the properties of these numerical schemes, and provide guidance as to the appropriate choice of numerical parameters.

Convolutional Neural Networks have demonstrated dermatologist-level performance in the classification of melanoma and other skin lesions, but prediction irregularities due to biases seen within the training data are an issue that should be addressed before widespread deployment is possible. In this work, we robustly remove bias and spurious variation from an automated melanoma classification pipeline using two leading bias unlearning techniques. We show that the biases introduced by surgical markings and rulers presented in previous studies can be reasonably mitigated using these bias removal methods. We also demonstrate the generalisation benefits of unlearning spurious variation relating to the imaging instrument used to capture lesion images. Contributions of this work include the application of different debiasing techniques for artefact bias removal and the concept of instrument bias unlearning for domain generalisation in melanoma detection. Our experimental results provide evidence that the effects of each of the aforementioned biases are notably reduced, with different debiasing techniques excelling at different tasks.

In this paper, a peridynamics-based finite element method (Peri-FEM) is proposed for the quasi-static fracture analysis, which is of the consistent computational framework with the classical finite element method (FEM). First, the integral domain of the peridynamics is reconstructed, and a new type of element called peridynamic element (PE) is defined. Although PEs are generated by the continuous elements (CEs) of classical FEM, they do not affect each other. Then the spatial discretization is performed based on PEs and CEs, and the linear equations about the nodal displacement are established according to the principle of minimum potential energy. Besides, the cracks are characterized as the degradation of the mechanical properties of PEs. Finally, the validity of the proposed method is demonstrated through numerical examples.

A periodic lattice in Euclidean space is the infinite set of all integer linear combinations of basis vectors. Any lattice can be generated by infinitely many different bases. Motivated by rigid crystal structures, we consider lattices up to rigid motion or isometry, which preserves inter-point distances. Then all isometry classes of lattices form a continuous space. There are several parameterisations of this space in dimensions two and three, but this is the first which is not discontinuous in singular cases. We introduce new continuous coordinates (root products) on the space of lattices and new metrics between root forms satisfying all metric axioms and continuity under all perturbations. The root forms allow visualisations of hundreds of thousands of real crystal lattices from the Cambridge Structural Database for the first time.

We present a continuous formulation of machine learning, as a problem in the calculus of variations and differential-integral equations, very much in the spirit of classical numerical analysis and statistical physics. We demonstrate that conventional machine learning models and algorithms, such as the random feature model, the shallow neural network model and the residual neural network model, can all be recovered as particular discretizations of different continuous formulations. We also present examples of new models, such as the flow-based random feature model, and new algorithms, such as the smoothed particle method and spectral method, that arise naturally from this continuous formulation. We discuss how the issues of generalization error and implicit regularization can be studied under this framework.

In recent years, deep learning techniques have been developed to improve the performance of program synthesis from input-output examples. Albeit its significant progress, the programs that can be synthesized by state-of-the-art approaches are still simple in terms of their complexity. In this work, we move a significant step forward along this direction by proposing a new class of challenging tasks in the domain of program synthesis from input-output examples: learning a context-free parser from pairs of input programs and their parse trees. We show that this class of tasks are much more challenging than previously studied tasks, and the test accuracy of existing approaches is almost 0%. We tackle the challenges by developing three novel techniques inspired by three novel observations, which reveal the key ingredients of using deep learning to synthesize a complex program. First, the use of a non-differentiable machine is the key to effectively restrict the search space. Thus our proposed approach learns a neural program operating a domain-specific non-differentiable machine. Second, recursion is the key to achieve generalizability. Thus, we bake-in the notion of recursion in the design of our non-differentiable machine. Third, reinforcement learning is the key to learn how to operate the non-differentiable machine, but it is also hard to train the model effectively with existing reinforcement learning algorithms from a cold boot. We develop a novel two-phase reinforcement learning-based search algorithm to overcome this issue. In our evaluation, we show that using our novel approach, neural parsing programs can be learned to achieve 100% test accuracy on test inputs that are 500x longer than the training samples.