Amyotrophic lateral sclerosis is a fatal disease that not only affects movement, speech, and breath but also cognition. Recent studies have focused on the use of language analysis techniques to detect ALS and infer scales for monitoring functional progression. In this paper, we focused on another important aspect, cognitive impairment, which affects 35-50% of the ALS population. In an effort to reach the ALS population, which frequently exhibits mobility limitations, we implemented the digital version of the Edinburgh Cognitive and Behavioral ALS Screen (ECAS) test for the first time. This test which is designed to measure cognitive impairment was remotely performed by 56 participants from the EverythingALS Speech Study. As part of the study, participants (ALS and non-ALS) were asked to describe weekly one picture from a pool of many pictures with complex scenes displayed on their computer at home. We analyze the descriptions performed within +/- 60 days from the day the ECAS test was administered and extract different types of linguistic and acoustic features. We input those features into linear regression models to infer 5 ECAS sub-scores and the total score. Speech samples from the picture description are reliable enough to predict the ECAS subs-scores, achieving statistically significant Spearman correlation values between 0.32 and 0.51 for the model's performance using 10-fold cross-validation.
Languages are known to describe the world in diverse ways. Across lexicons, diversity is pervasive, appearing through phenomena such as lexical gaps and untranslatability. However, in computational resources, such as multilingual lexical databases, diversity is hardly ever represented. In this paper, we introduce a method to enrich computational lexicons with content relating to linguistic diversity. The method is verified through two large-scale case studies on kinship terminology, a domain known to be diverse across languages and cultures: one case study deals with seven Arabic dialects, while the other one with three Indonesian languages. Our results, made available as browseable and downloadable computational resources, extend prior linguistics research on kinship terminology, and provide insight into the extent of diversity even within linguistically and culturally close communities.
Shrinkage methods are frequently used to estimate fixed effects to reduce the noisiness of the least squares estimators. However, widely used shrinkage estimators guarantee such noise reduction only under strong distributional assumptions. I develop an estimator for the fixed effects that obtains the best possible mean squared error within a class of shrinkage estimators. This class includes conventional shrinkage estimators and the optimality does not require distributional assumptions. The estimator has an intuitive form and is easy to implement. Moreover, the fixed effects are allowed to vary with time and to be serially correlated, and the shrinkage optimally incorporates the underlying correlation structure in this case. In such a context, I also provide a method to forecast fixed effects one period ahead.
Diabetic retinopathy (DR). is caused by long-standing diabetes and is among the fifth leading cause for visual impairments. The process of early diagnosis and treatments could be helpful in curing the disease, however, the detection procedure is rather challenging and mostly tedious. Therefore, automated diabetic retinopathy classification using deep learning techniques has gained interest in the medical imaging community. Akin to several other real-world applications of deep learning, the typical assumption of i.i.d data is also violated in DR classification that relies on deep learning. Therefore, developing DR classification methods robust to unseen distributions is of great value. In this paper, we study the problem of generalizing a model to unseen distributions or domains (a.k.a domain generalization) in DR classification. To this end, we propose a simple and effective domain generalization (DG) approach that achieves self-distillation in vision transformers (ViT) via a novel prediction softening mechanism. This prediction softening is an adaptive convex combination one-hot labels with the model's own knowledge. We perform extensive experiments on challenging open-source DR classification datasets under both multi-source and single-source DG settings with three different ViT backbones to establish the efficacy and applicability of our approach against competing methods. For the first time, we report the performance of several state-of-the-art DG methods on open-source DR classification datasets after conducting thorough experiments. Finally, our method is also capable of delivering improved calibration performance than other methods, showing its suitability for safety-critical applications, including healthcare. We hope that our contributions would investigate more DG research across the medical imaging community.
Making causal inferences from observational studies can be challenging when confounders are missing not at random. In such cases, identifying causal effects is often not guaranteed. Motivated by a real example, we consider a treatment-independent missingness assumption under which we establish the identification of causal effects when confounders are missing not at random. We propose a weighted estimating equation (WEE) approach for estimating model parameters and introduce three estimators for the average causal effect, based on regression, propensity score weighting, and doubly robust estimation. We evaluate the performance of these estimators through simulations, and provide a real data analysis to illustrate our proposed method.
Tuberculosis (TB), a bacterial disease mainly affecting the lungs, is one of the leading infectious causes of mortality worldwide. To prevent TB from spreading within the body, which causes life-threatening complications, timely and effective anti-TB treatment is crucial. Cough, an objective biomarker for TB, is a triage tool that monitors treatment response and regresses with successful therapy. Current gold standards for TB diagnosis are slow or inaccessible, especially in rural areas where TB is most prevalent. In addition, current machine learning (ML) diagnosis research, like utilizing chest radiographs, is ineffective and does not monitor treatment progression. To enable effective diagnosis, an ensemble model was developed that analyzes, using a novel ML architecture, coughs' acoustic epidemiologies from smartphones' microphones to detect TB. The architecture includes a 2D-CNN and XGBoost that was trained on 724,964 cough audio samples and demographics from 7 countries. After feature extraction (Mel-spectrograms) and data augmentation (IR-convolution), the model achieved AUROC (area under the receiving operator characteristic) of 88%, surpassing WHO's requirements for screening tests. The results are available within 15 seconds and can easily be accessible via a mobile app. This research helps to improve TB diagnosis through a promising accurate, quick, and accessible triaging tool.
Overparameterized neural networks (NNs) are observed to generalize well even when trained to perfectly fit noisy data. This phenomenon motivated a large body of work on "benign overfitting", where interpolating predictors achieve near-optimal performance. Recently, it was conjectured and empirically observed that the behavior of NNs is often better described as "tempered overfitting", where the performance is non-optimal yet also non-trivial, and degrades as a function of the noise level. However, a theoretical justification of this claim for non-linear NNs has been lacking so far. In this work, we provide several results that aim at bridging these complementing views. We study a simple classification setting with 2-layer ReLU NNs, and prove that under various assumptions, the type of overfitting transitions from tempered in the extreme case of one-dimensional data, to benign in high dimensions. Thus, we show that the input dimension has a crucial role on the type of overfitting in this setting, which we also validate empirically for intermediate dimensions. Overall, our results shed light on the intricate connections between the dimension, sample size, architecture and training algorithm on the one hand, and the type of resulting overfitting on the other hand.
Schizophrenia is a severe yet treatable mental disorder, it is diagnosed using a multitude of primary and secondary symptoms. Diagnosis and treatment for each individual depends on the severity of the symptoms, therefore there is a need for accurate, personalised assessments. However, the process can be both time-consuming and subjective; hence, there is a motivation to explore automated methods that can offer consistent diagnosis and precise symptom assessments, thereby complementing the work of healthcare practitioners. Machine Learning has demonstrated impressive capabilities across numerous domains, including medicine; the use of Machine Learning in patient assessment holds great promise for healthcare professionals and patients alike, as it can lead to more consistent and accurate symptom estimation.This survey aims to review methodologies that utilise Machine Learning for diagnosis and assessment of schizophrenia. Contrary to previous reviews that primarily focused on binary classification, this work recognises the complexity of the condition and instead, offers an overview of Machine Learning methods designed for fine-grained symptom estimation. We cover multiple modalities, namely Medical Imaging, Electroencephalograms and Audio-Visual, as the illness symptoms can manifest themselves both in a patient's pathology and behaviour. Finally, we analyse the datasets and methodologies used in the studies and identify trends, gaps as well as opportunities for future research.
Although large language models (LLMs) are impressive in solving various tasks, they can quickly be outdated after deployment. Maintaining their up-to-date status is a pressing concern in the current era. This paper provides a comprehensive review of recent advances in aligning LLMs with the ever-changing world knowledge without re-training from scratch. We categorize research works systemically and provide in-depth comparisons and discussion. We also discuss existing challenges and highlight future directions to facilitate research in this field. We release the paper list at //github.com/hyintell/awesome-refreshing-llms
Understanding causality helps to structure interventions to achieve specific goals and enables predictions under interventions. With the growing importance of learning causal relationships, causal discovery tasks have transitioned from using traditional methods to infer potential causal structures from observational data to the field of pattern recognition involved in deep learning. The rapid accumulation of massive data promotes the emergence of causal search methods with brilliant scalability. Existing summaries of causal discovery methods mainly focus on traditional methods based on constraints, scores and FCMs, there is a lack of perfect sorting and elaboration for deep learning-based methods, also lacking some considers and exploration of causal discovery methods from the perspective of variable paradigms. Therefore, we divide the possible causal discovery tasks into three types according to the variable paradigm and give the definitions of the three tasks respectively, define and instantiate the relevant datasets for each task and the final causal model constructed at the same time, then reviews the main existing causal discovery methods for different tasks. Finally, we propose some roadmaps from different perspectives for the current research gaps in the field of causal discovery and point out future research directions.
Visual Question Answering (VQA) models have struggled with counting objects in natural images so far. We identify a fundamental problem due to soft attention in these models as a cause. To circumvent this problem, we propose a neural network component that allows robust counting from object proposals. Experiments on a toy task show the effectiveness of this component and we obtain state-of-the-art accuracy on the number category of the VQA v2 dataset without negatively affecting other categories, even outperforming ensemble models with our single model. On a difficult balanced pair metric, the component gives a substantial improvement in counting over a strong baseline by 6.6%.