We consider the massively parallel computation (MPC) model, which is a theoretical abstraction of large-scale parallel processing models such as MapReduce. In this model, assuming the widely believed 1-vs-2-cycles conjecture, solving many basic graph problems in $O(1)$ rounds with a strongly sublinear memory size per machine is impossible. We improve on the recent work of Holm and T\v{e}tek [SODA 2023] that bypass this barrier for problems when a planar embedding of the graph is given. In the previous work, on graphs of size $n$ with $O(n/\mathcal{S})$ machines, the memory size per machine needs to be at least $\mathcal{S} = n^{2/3+\Omega(1)}$, whereas we extend their work to the fully scalable regime, where the memory size per machine can be $\mathcal{S} = n^{\delta}$ for any constant $0< \delta < 1$. We give the first constant round fully scalable algorithms for embedded planar graphs for the problems of (i) connectivity and (ii) minimum spanning tree (MST). Moreover, we show that the $\varepsilon$-emulator of Chang, Krauthgamer, and Tan [STOC 2022] can be incorporated into our recursive framework to obtain constant-round $(1+\varepsilon)$-approximation algorithms for the problems of computing (iii) single source shortest path (SSSP), (iv) global min-cut, and (v) $st$-max flow. All previous results on cuts and flows required linear memory in the MPC model. Furthermore, our results give new algorithms for problems that implicitly involve embedded planar graphs. We give as corollaries constant round fully scalable algorithms for (vi) 2D Euclidean MST using $O(n)$ total memory and (vii) $(1+\varepsilon)$-approximate weighted edit distance using $\widetilde{O}(n^{2-\delta})$ memory. Our main technique is a recursive framework combined with novel graph drawing algorithms to compute smaller embedded planar graphs in constant rounds in the fully scalable setting.
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Graph matching is a fundamental problem in pattern recognition, with many applications such as software analysis and computational biology. One well-known type of graph matching problem is graph isomorphism, which consists of deciding if two graphs are identical. Despite its usefulness, the properties that one may check using graph isomorphism are rather limited, since it only allows strict equality checks between two graphs. For example, it does not allow one to check complex structural properties such as if the target graph is an arbitrary length sequence followed by an arbitrary size loop. We propose a generalization of graph isomorphism that allows one to check such properties through a declarative specification. This specification is given in the form of a Regular Graph Pattern (ReGaP), a special type of graph, inspired by regular expressions, that may contain wildcard nodes that represent arbitrary structures such as variable-sized sequences or subgraphs. We propose a SAT-based algorithm for checking if a target graph matches a given ReGaP. We also propose a preprocessing technique for improving the performance of the algorithm and evaluate it through an extensive experimental evaluation on benchmarks from the CodeSearchNet dataset.
Topic modeling is a widely used technique for revealing underlying thematic structures within textual data. However, existing models have certain limitations, particularly when dealing with short text datasets that lack co-occurring words. Moreover, these models often neglect sentence-level semantics, focusing primarily on token-level semantics. In this paper, we propose PromptTopic, a novel topic modeling approach that harnesses the advanced language understanding of large language models (LLMs) to address these challenges. It involves extracting topics at the sentence level from individual documents, then aggregating and condensing these topics into a predefined quantity, ultimately providing coherent topics for texts of varying lengths. This approach eliminates the need for manual parameter tuning and improves the quality of extracted topics. We benchmark PromptTopic against the state-of-the-art baselines on three vastly diverse datasets, establishing its proficiency in discovering meaningful topics. Furthermore, qualitative analysis showcases PromptTopic's ability to uncover relevant topics in multiple datasets.
Krylov subspace, which is generated by multiplying a given vector by the matrix of a linear transformation and its successive powers, has been extensively studied in classical optimization literature to design algorithms that converge quickly for large linear inverse problems. For example, the conjugate gradient method (CG), one of the most popular Krylov subspace methods, is based on the idea of minimizing the residual error in the Krylov subspace. However, with the recent advancement of high-performance diffusion solvers for inverse problems, it is not clear how classical wisdom can be synergistically combined with modern diffusion models. In this study, we propose a novel and efficient diffusion sampling strategy that synergistically combine the diffusion sampling and Krylov subspace methods. Specifically, we prove that if the tangent space at a denoised sample by Tweedie's formula forms a Krylov subspace, then the CG initialized with the denoised data ensures the data consistency update to remain in the tangent space. This negates the need to compute the manifold-constrained gradient (MCG), leading to a more efficient diffusion sampling method. Our method is applicable regardless of the parametrization and setting (i.e., VE, VP). Notably, we achieve state-of-the-art reconstruction quality on challenging real-world medical inverse imaging problems, including multi-coil MRI reconstruction and 3D CT reconstruction. Moreover, our proposed method achieves more than 80 times faster inference time than the previous state-of-the-art method.
This paper presents a motion planning algorithm for quadruped locomotion based on density functions. We decompose the locomotion problem into a high-level density planner and a model predictive controller (MPC). Due to density functions having a physical interpretation through the notion of occupancy, it is intuitive to represent the environment with safety constraints. Hence, there is an ease of use to constructing the planning problem with density. The proposed method uses a simplified model of the robot into an integrator system, where the high-level plan is in a feedback form formulated through an analytically constructed density function. We then use the MPC to optimize the reference trajectory, in which a low-level PID controller is used to obtain the torque level control. The overall framework is implemented in simulation, demonstrating our feedback density planner for legged locomotion. The implementation of work is available at \url{//github.com/AndrewZheng-1011/legged_planner}
L1-norm regularized logistic regression models are widely used for analyzing data with binary response. In those analyses, fusing regression coefficients is useful for detecting groups of variables. This paper proposes a binomial logistic regression model with Bayesian fused lasso. Assuming a Laplace prior on regression coefficients and differences between adjacent regression coefficients enables us to perform variable selection and variable fusion simultaneously in the Bayesian framework. We also propose assuming a horseshoe prior on the differences to improve the flexibility of variable fusion. The Gibbs sampler is derived to estimate the parameters by a hierarchical expression of priors and a data-augmentation method. Using simulation studies and real data analysis, we compare the proposed methods with the existing method.
Oblivious routing is a well-studied paradigm that uses static precomputed routing tables for selecting routing paths within a network. Existing oblivious routing schemes with polylogarithmic competitive ratio for general networks are tree-based, in the sense that routing is performed according to a convex combination of trees. However, this restriction to trees leads to a construction that has time quadratic in the size of the network and does not parallelize well. In this paper we study oblivious routing schemes based on electrical routing. In particular, we show that general networks with $n$ vertices and $m$ edges admit a routing scheme that has competitive ratio $O(\log^2 n)$ and consists of a convex combination of only $O(\sqrt{m})$ electrical routings. This immediately leads to an improved construction algorithm with time $\tilde{O}(m^{3/2})$ that can also be implemented in parallel with $\tilde{O}(\sqrt{m})$ depth.
The field of computational pathology has witnessed remarkable progress in the development of both task-specific predictive models and task-agnostic self-supervised vision encoders. However, despite the explosive growth of generative artificial intelligence (AI), there has been limited study on building general purpose, multimodal AI assistants tailored to pathology. Here we present PathChat, a vision-language generalist AI assistant for human pathology using an in-house developed foundational vision encoder pretrained on 100 million histology images from over 100,000 patient cases and 1.18 million pathology image-caption pairs. The vision encoder is then combined with a pretrained large language model and the whole system is finetuned on over 250,000 diverse disease agnostic visual language instructions. We compare PathChat against several multimodal vision language AI assistants as well as GPT4V, which powers the commercially available multimodal general purpose AI assistant ChatGPT-4. When relevant clinical context is provided with the histology image, PathChat achieved a diagnostic accuracy of 87% on multiple-choice questions based on publicly available cases of diverse tissue origins and disease models. Additionally, using open-ended questions and human expert evaluation, we found that overall PathChat produced more accurate and pathologist-preferable responses to diverse queries related to pathology. As an interactive and general vision language AI assistant that can flexibly handle both visual and natural language inputs, PathChat can potentially find impactful applications in pathology education, research, and human-in-the-loop clinical decision making.
Contrastive learning models have achieved great success in unsupervised visual representation learning, which maximize the similarities between feature representations of different views of the same image, while minimize the similarities between feature representations of views of different images. In text summarization, the output summary is a shorter form of the input document and they have similar meanings. In this paper, we propose a contrastive learning model for supervised abstractive text summarization, where we view a document, its gold summary and its model generated summaries as different views of the same mean representation and maximize the similarities between them during training. We improve over a strong sequence-to-sequence text generation model (i.e., BART) on three different summarization datasets. Human evaluation also shows that our model achieves better faithfulness ratings compared to its counterpart without contrastive objectives.
Humans perceive the world by concurrently processing and fusing high-dimensional inputs from multiple modalities such as vision and audio. Machine perception models, in stark contrast, are typically modality-specific and optimised for unimodal benchmarks, and hence late-stage fusion of final representations or predictions from each modality (`late-fusion') is still a dominant paradigm for multimodal video classification. Instead, we introduce a novel transformer based architecture that uses `fusion bottlenecks' for modality fusion at multiple layers. Compared to traditional pairwise self-attention, our model forces information between different modalities to pass through a small number of bottleneck latents, requiring the model to collate and condense the most relevant information in each modality and only share what is necessary. We find that such a strategy improves fusion performance, at the same time reducing computational cost. We conduct thorough ablation studies, and achieve state-of-the-art results on multiple audio-visual classification benchmarks including Audioset, Epic-Kitchens and VGGSound. All code and models will be released.
Multi-relation Question Answering is a challenging task, due to the requirement of elaborated analysis on questions and reasoning over multiple fact triples in knowledge base. In this paper, we present a novel model called Interpretable Reasoning Network that employs an interpretable, hop-by-hop reasoning process for question answering. The model dynamically decides which part of an input question should be analyzed at each hop; predicts a relation that corresponds to the current parsed results; utilizes the predicted relation to update the question representation and the state of the reasoning process; and then drives the next-hop reasoning. Experiments show that our model yields state-of-the-art results on two datasets. More interestingly, the model can offer traceable and observable intermediate predictions for reasoning analysis and failure diagnosis, thereby allowing manual manipulation in predicting the final answer.
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