Protein language models (LMs) have been successful in sequence, structural and functional predictions. However, currently, protein LMs are limited to encoder- or decoder-only architectures for single sequences while many biological contexts involve protein-protein interactions. Here, we introduce pAbT5, which models antibody chain pairing as forward- and back-translations using a T5-based architecture. We show that pAbT5 accurately reflects chain pairing through sequence generation. Our protein LM generates variable-length sequences and its next-word prediction probability agrees with position-specific scoring matrix from sequence alignment. Like other works in protein LM, pAbT5 performs state-of-the-art unsupervised prediction on experimental measurements. To the best of our knowledge, pAbT5 is the first generative encoder-decoder protein LM for protein-protein interactions.
Establishing correspondence between images or scenes is a significant challenge in computer vision, especially given occlusions, viewpoint changes, and varying object appearances. In this paper, we present Siamese Masked Autoencoders (SiamMAE), a simple extension of Masked Autoencoders (MAE) for learning visual correspondence from videos. SiamMAE operates on pairs of randomly sampled video frames and asymmetrically masks them. These frames are processed independently by an encoder network, and a decoder composed of a sequence of cross-attention layers is tasked with predicting the missing patches in the future frame. By masking a large fraction ($95\%$) of patches in the future frame while leaving the past frame unchanged, SiamMAE encourages the network to focus on object motion and learn object-centric representations. Despite its conceptual simplicity, features learned via SiamMAE outperform state-of-the-art self-supervised methods on video object segmentation, pose keypoint propagation, and semantic part propagation tasks. SiamMAE achieves competitive results without relying on data augmentation, handcrafted tracking-based pretext tasks, or other techniques to prevent representational collapse.
With the exponential growth of video data, there is an urgent need for automated technology to analyze and comprehend video content. However, existing video understanding models are often task-specific and lack a comprehensive capability of handling diverse tasks. The success of large language models (LLMs) like GPT has demonstrated their impressive abilities in sequence causal reasoning. Building upon this insight, we propose a novel framework called VideoLLM that leverages the sequence reasoning capabilities of pre-trained LLMs from natural language processing (NLP) for video sequence understanding. VideoLLM incorporates a carefully designed Modality Encoder and Semantic Translator, which convert inputs from various modalities into a unified token sequence. This token sequence is then fed into a decoder-only LLM. Subsequently, with the aid of a simple task head, our VideoLLM yields an effective unified framework for different kinds of video understanding tasks. To evaluate the efficacy of VideoLLM, we conduct extensive experiments using multiple LLMs and fine-tuning methods. We evaluate our VideoLLM on eight tasks sourced from four different datasets. The experimental results demonstrate that the understanding and reasoning capabilities of LLMs can be effectively transferred to video understanding tasks.
Large language models (LLMs) are becoming attractive as few-shot reasoners to solve NL-related tasks. However, there is still much to be learned about how well LLMs understand structured data, such as tables. While it is true that tables can be used as inputs to LLMs with serialization, there lack comprehensive studies examining whether LLMs can truly comprehend such data. In this paper we try to understand this by designing a benchmark to evaluate structural understanding capabilities (SUC) of LLMs. The benchmark we create includes seven tasks, each with their own unique challenges, e.g,, cell lookup, row retrieval and size detection. We run a series of evaluations on GPT-3 family models (e.g., text-davinci-003). We discover that the performance varied depending on a number of input choices, including table input format, content order, role prompting and partition marks. Drawing from the insights gained through the benchmark evaluations, we then propose self-augmentation for effective structural prompting, e.g., critical value / range identification using LLMs' internal knowledge. When combined with carefully chosen input choices, these structural prompting methods lead to promising improvements in LLM performance on a variety of tabular tasks, e.g., TabFact($\uparrow2.31\%$), HybridQA($\uparrow2.13\%$), SQA($\uparrow2.72\%$), Feverous($\uparrow0.84\%$), and ToTTo($\uparrow5.68\%$). We believe our benchmark and proposed prompting methods can serve as a simple yet generic selection for future research. The code and data are released in //anonymous.4open.science/r/StructuredLLM-76F3.
The vanilla image completion approaches are sensitive to the large missing regions due to limited available reference information for plausible generation. To mitigate this, existing methods incorporate the extra cue as a guidance for image completion. Despite improvements, these approaches are often restricted to employing a single modality (e.g., segmentation or sketch maps), which lacks scalability in leveraging multi-modality for more plausible completion. In this paper, we propose a novel, simple yet effective method for Multi-modal Guided Image Completion, dubbed MaGIC, which not only supports a wide range of single modality as the guidance (e.g., text, canny edge, sketch, segmentation, reference image, depth, and pose), but also adapts to arbitrarily customized combination of these modalities (i.e., arbitrary multi-modality) for image completion. For building MaGIC, we first introduce a modality-specific conditional U-Net (MCU-Net) that injects single-modal signal into a U-Net denoiser for single-modal guided image completion. Then, we devise a consistent modality blending (CMB) method to leverage modality signals encoded in multiple learned MCU-Nets through gradient guidance in latent space. Our CMB is training-free, and hence avoids the cumbersome joint re-training of different modalities, which is the secret of MaGIC to achieve exceptional flexibility in accommodating new modalities for completion. Experiments show the superiority of MaGIC over state-of-arts and its generalization to various completion tasks including in/out-painting and local editing. Our project with code and models is available at yeates.github.io/MaGIC-Page/.
Recent advancements in Text-to-Image (T2I) generative models have yielded impressive results in generating high-fidelity images based on consistent text prompts. However, there is a growing interest in exploring the potential of these models for more diverse reference-based image manipulation tasks that require spatial understanding and visual context. Previous approaches have achieved this by incorporating additional control modules or fine-tuning the generative models specifically for each task until convergence. In this paper, we propose a different perspective. We conjecture that current large-scale T2I generative models already possess the capability to perform these tasks but are not fully activated within the standard generation process. To unlock these capabilities, we introduce a unified Prompt-Guided In-Context inpainting (PGIC) framework, which leverages large-scale T2I models to re-formulate and solve reference-guided image manipulations. In the PGIC framework, the reference and masked target are stitched together as a new input for the generative models, enabling the filling of masked regions as producing final results. Furthermore, we demonstrate that the self-attention modules in T2I models are well-suited for establishing spatial correlations and efficiently addressing challenging reference-guided manipulations. These large T2I models can be effectively driven by task-specific prompts with minimal training cost or even with frozen backbones. We synthetically evaluate the effectiveness of the proposed PGIC framework across various tasks, including reference-guided image inpainting, faithful inpainting, outpainting, local super-resolution, and novel view synthesis. Our results show that PGIC achieves significantly better performance while requiring less computation compared to other fine-tuning based approaches.
Finding an agreement among diverse opinions is a challenging topic in multiagent systems. Recently, large language models (LLMs) have shown great potential in addressing this challenge due to their remarkable capabilities in comprehending human opinions and generating human-like text. However, they typically rely on extensive human-annotated data. In this paper, we propose Self-Agreement, a novel framework for fine-tuning LLMs to autonomously find agreement using data generated by LLM itself. Specifically, our approach employs the generative pre-trained transformer-3 (GPT-3) to generate multiple opinions for each question in a question dataset and create several agreement candidates among these opinions. Then, a bidirectional encoder representations from transformers (BERT)-based model evaluates the agreement score of each agreement candidate and selects the one with the highest agreement score. This process yields a dataset of question-opinion-agreements, which we use to fine-tune a pre-trained LLM for discovering agreements among diverse opinions. Remarkably, a pre-trained LLM fine-tuned by our Self-Agreement framework achieves comparable performance to GPT-3 with only 1/25 of its parameters, showcasing its ability to identify agreement among various opinions without the need for human-annotated data.
Humans exhibit complex motions that vary depending on the task that they are performing, the interactions they engage in, as well as subject-specific preferences. Therefore, forecasting future poses based on the history of the previous motions is a challenging task. This paper presents an innovative auxiliary-memory-powered deep neural network framework for the improved modelling of historical knowledge. Specifically, we disentangle subject-specific, task-specific, and other auxiliary information from the observed pose sequences and utilise these factorised features to query the memory. A novel Multi-Head knowledge retrieval scheme leverages these factorised feature embeddings to perform multiple querying operations over the historical observations captured within the auxiliary memory. Moreover, our proposed dynamic masking strategy makes this feature disentanglement process dynamic. Two novel loss functions are introduced to encourage diversity within the auxiliary memory while ensuring the stability of the memory contents, such that it can locate and store salient information that can aid the long-term prediction of future motion, irrespective of data imbalances or the diversity of the input data distribution. With extensive experiments conducted on two public benchmarks, Human3.6M and CMU-Mocap, we demonstrate that these design choices collectively allow the proposed approach to outperform the current state-of-the-art methods by significant margins: $>$ 17\% on the Human3.6M dataset and $>$ 9\% on the CMU-Mocap dataset.
As a widely recognized approach to deep generative modeling, Variational Auto-Encoders (VAEs) still face challenges with the quality of generated images, often presenting noticeable blurriness. This issue stems from the unrealistic assumption that approximates the conditional data distribution, $p(\textbf{x} | \textbf{z})$, as an isotropic Gaussian. In this paper, we propose a novel solution to address these issues. We illustrate how one can extract a latent space from a pre-existing diffusion model by optimizing an encoder to maximize the marginal data log-likelihood. Furthermore, we demonstrate that a decoder can be analytically derived post encoder-training, employing the Bayes rule for scores. This leads to a VAE-esque deep latent variable model, which discards the need for Gaussian assumptions on $p(\textbf{x} | \textbf{z})$ or the training of a separate decoder network. Our method, which capitalizes on the strengths of pre-trained diffusion models and equips them with latent spaces, results in a significant enhancement to the performance of VAEs.
Pre-trained Language Models (PLMs) which are trained on large text corpus via self-supervised learning method, have yielded promising performance on various tasks in Natural Language Processing (NLP). However, though PLMs with huge parameters can effectively possess rich knowledge learned from massive training text and benefit downstream tasks at the fine-tuning stage, they still have some limitations such as poor reasoning ability due to the lack of external knowledge. Research has been dedicated to incorporating knowledge into PLMs to tackle these issues. In this paper, we present a comprehensive review of Knowledge-Enhanced Pre-trained Language Models (KE-PLMs) to provide a clear insight into this thriving field. We introduce appropriate taxonomies respectively for Natural Language Understanding (NLU) and Natural Language Generation (NLG) to highlight these two main tasks of NLP. For NLU, we divide the types of knowledge into four categories: linguistic knowledge, text knowledge, knowledge graph (KG), and rule knowledge. The KE-PLMs for NLG are categorized into KG-based and retrieval-based methods. Finally, we point out some promising future directions of KE-PLMs.
Inspired by the success of transformer-based pre-training methods on natural language tasks and further computer vision tasks, researchers have begun to apply transformer to video processing. This survey aims to give a comprehensive overview on transformer-based pre-training methods for Video-Language learning. We first briefly introduce the transformer tructure as the background knowledge, including attention mechanism, position encoding etc. We then describe the typical paradigm of pre-training & fine-tuning on Video-Language processing in terms of proxy tasks, downstream tasks and commonly used video datasets. Next, we categorize transformer models into Single-Stream and Multi-Stream structures, highlight their innovations and compare their performances. Finally, we analyze and discuss the current challenges and possible future research directions for Video-Language pre-training.