Whole-slide image analysis via the means of computational pathology often relies on processing tessellated gigapixel images with only slide-level labels available. Applying multiple instance learning-based methods or transformer models is computationally expensive as, for each image, all instances have to be processed simultaneously. The MLP-Mixer is an under-explored alternative model to common vision transformers, especially for large-scale datasets. Due to the lack of a self-attention mechanism, they have linear computational complexity to the number of input patches but achieve comparable performance on natural image datasets. We propose a combination of feature embedding and clustering to preprocess the full whole-slide image into a reduced prototype representation which can then serve as input to a suitable MLP-Mixer architecture. Our experiments on two public benchmarks and one inhouse malignant lymphoma dataset show comparable performance to current state-of-the-art methods, while achieving lower training costs in terms of computational time and memory load. Code is publicly available at //github.com/butkej/ProtoMixer.
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A backdoor attack in deep learning inserts a hidden backdoor in the model to trigger malicious behavior upon specific input patterns. Existing detection approaches assume a metric space (for either the original inputs or their latent representations) in which normal samples and malicious samples are separable. We show that this assumption has a severe limitation by introducing a novel SSDT (Source-Specific and Dynamic-Triggers) backdoor, which obscures the difference between normal samples and malicious samples. To overcome this limitation, we move beyond looking for a perfect metric space that would work for different deep-learning models, and instead resort to more robust topological constructs. We propose TED (Topological Evolution Dynamics) as a model-agnostic basis for robust backdoor detection. The main idea of TED is to view a deep-learning model as a dynamical system that evolves inputs to outputs. In such a dynamical system, a benign input follows a natural evolution trajectory similar to other benign inputs. In contrast, a malicious sample displays a distinct trajectory, since it starts close to benign samples but eventually shifts towards the neighborhood of attacker-specified target samples to activate the backdoor. Extensive evaluations are conducted on vision and natural language datasets across different network architectures. The results demonstrate that TED not only achieves a high detection rate, but also significantly outperforms existing state-of-the-art detection approaches, particularly in addressing the sophisticated SSDT attack. The code to reproduce the results is made public on GitHub.
Knowledge distillation (KD) emerges as a promising yet challenging technique for compressing deep neural networks, aiming to transfer extensive learning representations from proficient and computationally intensive teacher models to compact student models. However, current KD methods for super-resolution (SR) models have limited performance and restricted applications, since the characteristics of SR tasks are overlooked. In this paper, we put forth an approach from the perspective of effective data utilization, namely, the Data Upcycling Knowledge Distillation (DUKD), which facilitates the student model by the prior knowledge the teacher provided through the upcycled in-domain data derived from the input images. Besides, for the first time, we realize the label consistency regularization in KD for SR models, which is implemented by the paired invertible data augmentations. It constrains the training process of KD and leads to better generalization capability of the student model. The DUKD, due to its versatility, can be applied across a broad spectrum of teacher-student architectures (e.g., CNN and Transformer models) and SR tasks, such as single image SR, real-world SR, and SR quantization, and is in parallel with other compression techniques. Comprehensive experiments on diverse benchmarks demonstrate that the DUKD method significantly outperforms previous art.
Composed image retrieval (CIR) task takes a composed query of image and text, aiming to search relative images for both conditions. Conventional CIR approaches need a training dataset composed of triplets of query image, query text, and target image, which is very expensive to collect. Several recent works have worked on the zero-shot (ZS) CIR paradigm to tackle the issue without using pre-collected triplets. However, the existing ZS-CIR methods show limited backbone scalability and generalizability due to the lack of diversity of the input texts during training. We propose a novel CIR framework, only using language for its training. Our LinCIR (Language-only training for CIR) can be trained only with text datasets by a novel self-supervision named self-masking projection (SMP). We project the text latent embedding to the token embedding space and construct a new text by replacing the keyword tokens of the original text. Then, we let the new and original texts have the same latent embedding vector. With this simple strategy, LinCIR is surprisingly efficient and highly effective; LinCIR with CLIP ViT-G backbone is trained in 48 minutes and shows the best ZS-CIR performances on four different CIR benchmarks, CIRCO, GeneCIS, FashionIQ, and CIRR, even outperforming supervised method on FashionIQ. Code is available at //github.com/navervision/lincir
This tutorial focuses on efficient methods to predictive monitoring (PM), the problem of detecting at runtime future violations of a given requirement from the current state of a system. While performing model checking at runtime would offer a precise solution to the PM problem, it is generally computationally expensive. To address this scalability issue, several lightweight approaches based on machine learning have recently been proposed. These approaches work by learning an approximate yet efficient surrogate (deep learning) model of the expensive model checker. A key challenge remains to ensure reliable predictions, especially in safety-critical applications. We review our recent work on predictive monitoring, one of the first to propose learning-based approximations for CPS verification of temporal logic specifications and the first in this context to apply conformal prediction (CP) for rigorous uncertainty quantification. These CP-based uncertainty estimators offer statistical guarantees regarding the generalization error of the learning model, and they can be used to determine unreliable predictions that should be rejected. In this tutorial, we present a general and comprehensive framework summarizing our approach to the predictive monitoring of CPSs, examining in detail several variants determined by three main dimensions: system dynamics (deterministic, non-deterministic, stochastic), state observability, and semantics of requirements' satisfaction (Boolean or quantitative).
Medical image registration aims at identifying the spatial deformation between images of the same anatomical region and is fundamental to image-based diagnostics and therapy. To date, the majority of the deep learning-based registration methods employ regularizers that enforce global spatial smoothness, e.g., the diffusion regularizer. However, such regularizers are not tailored to the data and might not be capable of reflecting the complex underlying deformation. In contrast, physics-inspired regularizers promote physically plausible deformations. One such regularizer is the linear elastic regularizer which models the deformation of elastic material. These regularizers are driven by parameters that define the material's physical properties. For biological tissue, a wide range of estimations of such parameters can be found in the literature and it remains an open challenge to identify suitable parameter values for successful registration. To overcome this problem and to incorporate physical properties into learning-based registration, we propose to use a hypernetwork that learns the effect of the physical parameters of a physics-inspired regularizer on the resulting spatial deformation field. In particular, we adapt the HyperMorph framework to learn the effect of the two elasticity parameters of the linear elastic regularizer. Our approach enables the efficient discovery of suitable, data-specific physical parameters at test time.
ReLU neural networks have been modelled as constraints in mixed integer linear programming (MILP), enabling surrogate-based optimisation in various domains and efficient solution of machine learning certification problems. However, previous works are mostly limited to MLPs. Graph neural networks (GNNs) can learn from non-euclidean data structures such as molecular structures efficiently and are thus highly relevant to computer-aided molecular design (CAMD). We propose a bilinear formulation for ReLU Graph Convolutional Neural Networks and a MILP formulation for ReLU GraphSAGE models. These formulations enable solving optimisation problems with trained GNNs embedded to global optimality. We apply our optimization approach to an illustrative CAMD case study where the formulations of the trained GNNs are used to design molecules with optimal boiling points.
A major concern in using deep learning based generative models for document-grounded dialogs is the potential generation of responses that are not \textit{faithful} to the underlying document. Existing automated metrics used for evaluating the faithfulness of response with respect to the grounding document measure the degree of similarity between the generated response and the document's content. However, these automated metrics are far from being well aligned with human judgments. Therefore, to improve the measurement of faithfulness, we propose a new metric that utilizes (Conditional) Point-wise Mutual Information (PMI) between the generated response and the source document, conditioned on the dialogue. PMI quantifies the extent to which the document influences the generated response -- with a higher PMI indicating a more faithful response. We build upon this idea to create a new decoding technique that incorporates PMI into the response generation process to predict more faithful responses. Our experiments on the BEGIN benchmark demonstrate an improved correlation of our metric with human evaluation. We also show that our decoding technique is effective in generating more faithful responses when compared to standard decoding techniques on a set of publicly available document-grounded dialog datasets.
The low resolution of objects of interest in aerial images makes pedestrian detection and action detection extremely challenging tasks. Furthermore, using deep convolutional neural networks to process large images can be demanding in terms of computational requirements. In order to alleviate these challenges, we propose a two-step, yes and no question answering framework to find specific individuals doing one or multiple specific actions in aerial images. First, a deep object detector, Single Shot Multibox Detector (SSD), is used to generate object proposals from small aerial images. Second, another deep network, is used to learn a latent common sub-space which associates the high resolution aerial imagery and the pedestrian action labels that are provided by the human-based sources
Recent advancements in deep neural networks for graph-structured data have led to state-of-the-art performance on recommender system benchmarks. However, making these methods practical and scalable to web-scale recommendation tasks with billions of items and hundreds of millions of users remains a challenge. Here we describe a large-scale deep recommendation engine that we developed and deployed at Pinterest. We develop a data-efficient Graph Convolutional Network (GCN) algorithm PinSage, which combines efficient random walks and graph convolutions to generate embeddings of nodes (i.e., items) that incorporate both graph structure as well as node feature information. Compared to prior GCN approaches, we develop a novel method based on highly efficient random walks to structure the convolutions and design a novel training strategy that relies on harder-and-harder training examples to improve robustness and convergence of the model. We also develop an efficient MapReduce model inference algorithm to generate embeddings using a trained model. We deploy PinSage at Pinterest and train it on 7.5 billion examples on a graph with 3 billion nodes representing pins and boards, and 18 billion edges. According to offline metrics, user studies and A/B tests, PinSage generates higher-quality recommendations than comparable deep learning and graph-based alternatives. To our knowledge, this is the largest application of deep graph embeddings to date and paves the way for a new generation of web-scale recommender systems based on graph convolutional architectures.
High spectral dimensionality and the shortage of annotations make hyperspectral image (HSI) classification a challenging problem. Recent studies suggest that convolutional neural networks can learn discriminative spatial features, which play a paramount role in HSI interpretation. However, most of these methods ignore the distinctive spectral-spatial characteristic of hyperspectral data. In addition, a large amount of unlabeled data remains an unexploited gold mine for efficient data use. Therefore, we proposed an integration of generative adversarial networks (GANs) and probabilistic graphical models for HSI classification. Specifically, we used a spectral-spatial generator and a discriminator to identify land cover categories of hyperspectral cubes. Moreover, to take advantage of a large amount of unlabeled data, we adopted a conditional random field to refine the preliminary classification results generated by GANs. Experimental results obtained using two commonly studied datasets demonstrate that the proposed framework achieved encouraging classification accuracy using a small number of data for training.
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