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The estimation of directed couplings between the nodes of a network from indirect measurements is a central methodological challenge in scientific fields such as neuroscience, systems biology and economics. Unfortunately, the problem is generally ill-posed due to the possible presence of unknown delays in the measurements. In this paper, we offer a solution of this problem by using a variational Bayes framework, where the uncertainty over the delays is marginalized in order to obtain conservative coupling estimates. To overcome the well-known overconfidence of classical variational methods, we use a hybrid-VI scheme where the (possibly flat or multimodal) posterior over the measurement parameters is estimated using a forward KL loss while the (nearly convex) conditional posterior over the couplings is estimated using the highly scalable gradient-based VI. In our ground-truth experiments, we show that the network provides reliable and conservative estimates of the couplings, greatly outperforming similar methods such as regression DCM.

This study proposes a novel image contrast enhancement method based on image projection onto the squared eigenfunctions of the two dimensional Schr\"odinger operator. This projection depends on a design parameter \texorpdfstring{\(\gamma\)}{gamma} which is proposed to control the pixel intensity during image reconstruction. The performance of the proposed method is investigated through its application to color images. The selection of \texorpdfstring{\(\gamma\)}{gamma} values is performed using k-means, which helps preserve the image spatial adjacency information. Furthermore, multi-objective optimization using the Non dominated Sorting Genetic Algorithm II (NSAG2) algorithm is proposed to select the optimal values of \texorpdfstring{\(\gamma\)}{gamma} and the semi-classical parameter h from the 2DSCSA. The results demonstrate the effectiveness of the proposed method for enhancing image contrast while preserving the inherent characteristics of the original image, producing the desired enhancement with almost no artifacts.

The sampling importance resampling method is widely utilized in various fields, such as numerical integration and statistical simulation. In this paper, two modified methods are presented by incorporating two variance reduction techniques commonly used in Monte Carlo simulation, namely antithetic sampling and Latin hypercube sampling, into the process of sampling importance resampling method respectively. Theoretical evidence is provided to demonstrate that the proposed methods significantly reduce estimation errors compared to the original approach. Furthermore, the effectiveness and advantages of the proposed methods are validated through both numerical studies and real data analysis.

This work characterizes equivariant polynomial functions from tuples of tensor inputs to tensor outputs. Loosely motivated by physics, we focus on equivariant functions with respect to the diagonal action of the orthogonal group on tensors. We show how to extend this characterization to other linear algebraic groups, including the Lorentz and symplectic groups. Our goal behind these characterizations is to define equivariant machine learning models. In particular, we focus on the sparse vector estimation problem. This problem has been broadly studied in the theoretical computer science literature, and explicit spectral methods, derived by techniques from sum-of-squares, can be shown to recover sparse vectors under certain assumptions. Our numerical results show that the proposed equivariant machine learning models can learn spectral methods that outperform the best theoretically known spectral methods in some regimes. The experiments also suggest that learned spectral methods can solve the problem in settings that have not yet been theoretically analyzed. This is an example of a promising direction in which theory can inform machine learning models and machine learning models could inform theory.

The notion of visual similarity is essential for computer vision, and in applications and studies revolving around vector embeddings of images. However, the scarcity of benchmark datasets poses a significant hurdle in exploring how these models perceive similarity. Here we introduce Style Aligned Artwork Datasets (SALADs), and an example of fruit-SALAD with 10,000 images of fruit depictions. This combined semantic category and style benchmark comprises 100 instances each of 10 easy-to-recognize fruit categories, across 10 easy distinguishable styles. Leveraging a systematic pipeline of generative image synthesis, this visually diverse yet balanced benchmark demonstrates salient differences in semantic category and style similarity weights across various computational models, including machine learning models, feature extraction algorithms, and complexity measures, as well as conceptual models for reference. This meticulously designed dataset offers a controlled and balanced platform for the comparative analysis of similarity perception. The SALAD framework allows the comparison of how these models perform semantic category and style recognition task to go beyond the level of anecdotal knowledge, making it robustly quantifiable and qualitatively interpretable.

Online statistical inference facilitates real-time analysis of sequentially collected data, making it different from traditional methods that rely on static datasets. This paper introduces a novel approach to online inference in high-dimensional generalized linear models, where we update regression coefficient estimates and their standard errors upon each new data arrival. In contrast to existing methods that either require full dataset access or large-dimensional summary statistics storage, our method operates in a single-pass mode, significantly reducing both time and space complexity. The core of our methodological innovation lies in an adaptive stochastic gradient descent algorithm tailored for dynamic objective functions, coupled with a novel online debiasing procedure. This allows us to maintain low-dimensional summary statistics while effectively controlling optimization errors introduced by the dynamically changing loss functions. We demonstrate that our method, termed the Approximated Debiased Lasso (ADL), not only mitigates the need for the bounded individual probability condition but also significantly improves numerical performance. Numerical experiments demonstrate that the proposed ADL method consistently exhibits robust performance across various covariance matrix structures.

We study an interacting particle method (IPM) for computing the large deviation rate function of entropy production for diffusion processes, with emphasis on the vanishing-noise limit and high dimensions. The crucial ingredient to obtain the rate function is the computation of the principal eigenvalue $\lambda$ of elliptic, non-self-adjoint operators. We show that this principal eigenvalue can be approximated in terms of the spectral radius of a discretized evolution operator obtained from an operator splitting scheme and an Euler--Maruyama scheme with a small time step size, and we show that this spectral radius can be accessed through a large number of iterations of this discretized semigroup, suitable for the IPM. The IPM applies naturally to problems in unbounded domains, scales easily to high dimensions, and adapts to singular behaviors in the vanishing-noise limit. We show numerical examples in dimensions up to 16. The numerical results show that our numerical approximation of $\lambda$ converges to the analytical vanishing-noise limit within visual tolerance with a fixed number of particles and a fixed time step size. Our paper appears to be the first one to obtain numerical results of principal eigenvalue problems for non-self-adjoint operators in such high dimensions.

We introduce the matrix-valued time-varying Main Effects Factor Model (MEFM). MEFM is a generalization to the traditional matrix-valued factor model (FM). We give rigorous definitions of MEFM and its identifications, and propose estimators for the time-varying grand mean, row and column main effects, and the row and column factor loading matrices for the common component. Rates of convergence for different estimators are spelt out, with asymptotic normality shown. The core rank estimator for the common component is also proposed, with consistency of the estimators presented. We propose a test for testing if FM is sufficient against the alternative that MEFM is necessary, and demonstrate the power of such a test in various simulation settings. We also demonstrate numerically the accuracy of our estimators in extended simulation experiments. A set of NYC Taxi traffic data is analysed and our test suggests that MEFM is indeed necessary for analysing the data against a traditional FM.

Ptychography is a powerful imaging technique that is used in a variety of fields, including materials science, biology, and nanotechnology. However, the accuracy of the reconstructed ptychography image is highly dependent on the accuracy of the recorded probe positions which often contain errors. These errors are typically corrected jointly with phase retrieval through numerical optimization approaches. When the error accumulates along the scan path or when the error magnitude is large, these approaches may not converge with satisfactory result. We propose a fundamentally new approach for ptychography probe position prediction for data with large position errors, where a neural network is used to make single-shot phase retrieval on individual diffraction patterns, yielding the object image at each scan point. The pairwise offsets among these images are then found using a robust image registration method, and the results are combined to yield the complete scan path by constructing and solving a linear equation. We show that our method can achieve good position prediction accuracy for data with large and accumulating errors on the order of $10^2$ pixels, a magnitude that often makes optimization-based algorithms fail to converge. For ptychography instruments without sophisticated position control equipment such as interferometers, our method is of significant practical potential.

Linear non-Gaussian causal models postulate that each random variable is a linear function of parent variables and non-Gaussian exogenous error terms. We study identification of the linear coefficients when such models contain latent variables. Our focus is on the commonly studied acyclic setting, where each model corresponds to a directed acyclic graph (DAG). For this case, prior literature has demonstrated that connections to overcomplete independent component analysis yield effective criteria to decide parameter identifiability in latent variable models. However, this connection is based on the assumption that the observed variables linearly depend on the latent variables. Departing from this assumption, we treat models that allow for arbitrary non-linear latent confounding. Our main result is a graphical criterion that is necessary and sufficient for deciding the generic identifiability of direct causal effects. Moreover, we provide an algorithmic implementation of the criterion with a run time that is polynomial in the number of observed variables. Finally, we report on estimation heuristics based on the identification result, explore a generalization to models with feedback loops, and provide new results on the identifiability of the causal graph.