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Atmospheric retrievals (AR) of exoplanets typically rely on a combination of a Bayesian inference technique and a forward simulator to estimate atmospheric properties from an observed spectrum. A key component in simulating spectra is the pressure-temperature (PT) profile, which describes the thermal structure of the atmosphere. Current AR pipelines commonly use ad hoc fitting functions here that limit the retrieved PT profiles to simple approximations, but still use a relatively large number of parameters. In this work, we introduce a conceptually new, data-driven parameterization scheme for physically consistent PT profiles that does not require explicit assumptions about the functional form of the PT profiles and uses fewer parameters than existing methods. Our approach consists of a latent variable model (based on a neural network) that learns a distribution over functions (PT profiles). Each profile is represented by a low-dimensional vector that can be used to condition a decoder network that maps $P$ to $T$. When training and evaluating our method on two publicly available datasets of self-consistent PT profiles, we find that our method achieves, on average, better fit quality than existing baseline methods, despite using fewer parameters. In an AR based on existing literature, our model (using two parameters) produces a tighter, more accurate posterior for the PT profile than the five-parameter polynomial baseline, while also speeding up the retrieval by more than a factor of three. By providing parametric access to physically consistent PT profiles, and by reducing the number of parameters required to describe a PT profile (thereby reducing computational cost or freeing resources for additional parameters of interest), our method can help improve AR and thus our understanding of exoplanet atmospheres and their habitability.

In this paper, a multiscale constitutive framework for one-dimensional blood flow modeling is presented and discussed. By analyzing the asymptotic limits of the proposed model, it is shown that different types of blood propagation phenomena in arteries and veins can be described through an appropriate choice of scaling parameters, which are related to distinct characterizations of the fluid-structure interaction mechanism (whether elastic or viscoelastic) that exist between vessel walls and blood flow. In these asymptotic limits, well-known blood flow models from the literature are recovered. Additionally, by analyzing the perturbation of the local elastic equilibrium of the system, a new viscoelastic blood flow model is derived. The proposed approach is highly flexible and suitable for studying the human cardiovascular system, which is composed of vessels with high morphological and mechanical variability. The resulting multiscale hyperbolic model of blood flow is solved using an asymptotic-preserving Implicit-Explicit Runge-Kutta Finite Volume method, which ensures the consistency of the numerical scheme with the different asymptotic limits of the mathematical model without affecting the choice of the time step by restrictions related to the smallness of the scaling parameters. Several numerical tests confirm the validity of the proposed methodology, including a case study investigating the hemodynamics of a thoracic aorta in the presence of a stent.

Correlation matrix visualization is essential for understanding the relationships between variables in a dataset, but missing data can pose a significant challenge in estimating correlation coefficients. In this paper, we compare the effects of various missing data methods on the correlation plot, focusing on two common missing patterns: random and monotone. We aim to provide practical strategies and recommendations for researchers and practitioners in creating and analyzing the correlation plot. Our experimental results suggest that while imputation is commonly used for missing data, using imputed data for plotting the correlation matrix may lead to a significantly misleading inference of the relation between the features. We recommend using DPER, a direct parameter estimation approach, for plotting the correlation matrix based on its performance in the experiments.

Bayesian binary regression is a prosperous area of research due to the computational challenges encountered by currently available methods either for high-dimensional settings or large datasets, or both. In the present work, we focus on the expectation propagation (EP) approximation of the posterior distribution in Bayesian probit regression under a multivariate Gaussian prior distribution. Adapting more general derivations in Anceschi et al. (2023), we show how to leverage results on the extended multivariate skew-normal distribution to derive an efficient implementation of the EP routine having a per-iteration cost that scales linearly in the number of covariates. This makes EP computationally feasible also in challenging high-dimensional settings, as shown in a detailed simulation study.

Within the applications of spatial point processes, it is increasingly becoming common that events are labeled by marks, prompting an exploration beyond the spatial distribution of events by incorporating the marks in the undertaken analysis. In this paper, we first consider marked spatial point processes in $\R^2$, where marks are either integer-valued, real-valued, or object-valued, and review the state-of-the-art to analyze the spatial structure and type of interaction/correlation between marks. More specifically, we review cross/dot-type summary characteristics, mark-weighted summary characteristics, various mark correlation functions, and frequency domain approaches. Second, we propose novel cross/dot-type higher-order summary characteristics, mark-weighted summary characteristics, and mark correlation functions for marked point processes on linear networks. Through a simulation study, we show that ignoring the underlying network gives rise to erroneous conclusions about the interaction/correlation between marks. Finally, we consider two applications: the locations of two types of butterflies in Melbourne, Australia, and the locations of public trees along the street network of Vancouver, Canada, where trees are labeled by their diameters at breast height.

We present a novel training method for deep operator networks (DeepONets), one of the most popular neural network models for operators. DeepONets are constructed by two sub-networks, namely the branch and trunk networks. Typically, the two sub-networks are trained simultaneously, which amounts to solving a complex optimization problem in a high dimensional space. In addition, the nonconvex and nonlinear nature makes training very challenging. To tackle such a challenge, we propose a two-step training method that trains the trunk network first and then sequentially trains the branch network. The core mechanism is motivated by the divide-and-conquer paradigm and is the decomposition of the entire complex training task into two subtasks with reduced complexity. Therein the Gram-Schmidt orthonormalization process is introduced which significantly improves stability and generalization ability. On the theoretical side, we establish a generalization error estimate in terms of the number of training data, the width of DeepONets, and the number of input and output sensors. Numerical examples are presented to demonstrate the effectiveness of the two-step training method, including Darcy flow in heterogeneous porous media.

Many computer vision applications require robust and efficient estimation of camera geometry from a minimal number of input data measurements, i.e., solving minimal problems in a RANSAC framework. Minimal problems are usually formulated as complex systems of sparse polynomials. The systems usually are overdetermined and consist of polynomials with algebraically constrained coefficients. Most state-of-the-art efficient polynomial solvers are based on the action matrix method that has been automated and highly optimized in recent years. On the other hand, the alternative theory of sparse resultants and Newton polytopes has been less successful for generating efficient solvers, primarily because the polytopes do not respect the constraints on the coefficients. Therefore, in this paper, we propose a simple iterative scheme to test various subsets of the Newton polytopes and search for the most efficient solver. Moreover, we propose to use an extra polynomial with a special form to further improve the solver efficiency via a Schur complement computation. We show that for some camera geometry problems our extra polynomial-based method leads to smaller and more stable solvers than the state-of-the-art Grobner basis-based solvers. The proposed method can be fully automated and incorporated into existing tools for automatic generation of efficient polynomial solvers. It provides a competitive alternative to popular Grobner basis-based methods for minimal problems in computer vision. We also study the conditions under which the minimal solvers generated by the state-of-the-art action matrix-based methods and the proposed extra polynomial resultant-based method, are equivalent. Specifically we consider a step-by-step comparison between the approaches based on the action matrix and the sparse resultant, followed by a set of substitutions, which would lead to equivalent minimal solvers.

Devising deep latent variable models for multi-modal data has been a long-standing theme in machine learning research. Multi-modal Variational Autoencoders (VAEs) have been a popular generative model class that learns latent representations which jointly explain multiple modalities. Various objective functions for such models have been suggested, often motivated as lower bounds on the multi-modal data log-likelihood or from information-theoretic considerations. In order to encode latent variables from different modality subsets, Product-of-Experts (PoE) or Mixture-of-Experts (MoE) aggregation schemes have been routinely used and shown to yield different trade-offs, for instance, regarding their generative quality or consistency across multiple modalities. In this work, we consider a variational bound that can tightly lower bound the data log-likelihood. We develop more flexible aggregation schemes that generalise PoE or MoE approaches by combining encoded features from different modalities based on permutation-invariant neural networks. Our numerical experiments illustrate trade-offs for multi-modal variational bounds and various aggregation schemes. We show that tighter variational bounds and more flexible aggregation models can become beneficial when one wants to approximate the true joint distribution over observed modalities and latent variables in identifiable models.

In large-scale systems there are fundamental challenges when centralised techniques are used for task allocation. The number of interactions is limited by resource constraints such as on computation, storage, and network communication. We can increase scalability by implementing the system as a distributed task-allocation system, sharing tasks across many agents. However, this also increases the resource cost of communications and synchronisation, and is difficult to scale. In this paper we present four algorithms to solve these problems. The combination of these algorithms enable each agent to improve their task allocation strategy through reinforcement learning, while changing how much they explore the system in response to how optimal they believe their current strategy is, given their past experience. We focus on distributed agent systems where the agents' behaviours are constrained by resource usage limits, limiting agents to local rather than system-wide knowledge. We evaluate these algorithms in a simulated environment where agents are given a task composed of multiple subtasks that must be allocated to other agents with differing capabilities, to then carry out those tasks. We also simulate real-life system effects such as networking instability. Our solution is shown to solve the task allocation problem to 6.7% of the theoretical optimal within the system configurations considered. It provides 5x better performance recovery over no-knowledge retention approaches when system connectivity is impacted, and is tested against systems up to 100 agents with less than a 9% impact on the algorithms' performance.

We present ResMLP, an architecture built entirely upon multi-layer perceptrons for image classification. It is a simple residual network that alternates (i) a linear layer in which image patches interact, independently and identically across channels, and (ii) a two-layer feed-forward network in which channels interact independently per patch. When trained with a modern training strategy using heavy data-augmentation and optionally distillation, it attains surprisingly good accuracy/complexity trade-offs on ImageNet. We will share our code based on the Timm library and pre-trained models.