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This paper considers the filtering problem which consists in reconstructing the state of a dynamical system with partial observations coming from sensor measurements, and the knowledge that the dynamics are governed by a physical PDE model with unknown parameters. We present a filtering algorithm where the reconstruction of the dynamics is done with neural network approximations whose weights are dynamically updated using observational data. In addition to the estimate of the state, we also obtain time-dependent parameter estimations of the PDE parameters governing the observed evolution. We illustrate the behavior of the method in a one-dimensional KdV equation involving the transport of solutions with local support. Our numerical investigation reveals the importance of the location and number of the observations. In particular, it suggests to consider dynamical sensor placement.

In past work (Onokpasa, Wild, Wong, DCC 2023), we showed that (a) for joint compression of RNA sequence and structure, stochastic context-free grammars are the best known compressors and (b) that grammars which have better compression ability also show better performance in ab initio structure prediction. Previous grammars were manually curated by human experts. In this work, we develop a framework for automatic and systematic search algorithms for stochastic grammars with better compression (and prediction) ability for RNA. We perform an exhaustive search of small grammars and identify grammars that surpass the performance of human-expert grammars.

This paper discusses the development of synthetic cohomology in Homotopy Type Theory (HoTT), as well as its computer formalisation. The objectives of this paper are (1) to generalise previous work on integral cohomology in HoTT by the current authors and Brunerie (2022) to cohomology with arbitrary coefficients and (2) to provide the mathematical details of, as well as extend, results underpinning the computer formalisation of cohomology rings by the current authors and Lamiaux (2023). With respect to objective (1), we provide new direct definitions of the cohomology group operations and of the cup product, which, just as in (Brunerie et al., 2022), enable significant simplifications of many earlier proofs in synthetic cohomology theory. In particular, the new definition of the cup product allows us to give the first complete formalisation of the axioms needed to turn the cohomology groups into a graded commutative ring. We also establish that this cohomology theory satisfies the HoTT formulation of the Eilenberg-Steenrod axioms for cohomology and study the classical Mayer-Vietoris and Gysin sequences. With respect to objective (2), we characterise the cohomology groups and rings of various spaces, including the spheres, torus, Klein bottle, real/complex projective planes, and infinite real projective space. All results have been formalised in Cubical Agda and we obtain multiple new numbers, similar to the famous `Brunerie number', which can be used as benchmarks for computational implementations of HoTT. Some of these numbers are infeasible to compute in Cubical Agda and hence provide new computational challenges and open problems which are much easier to define than the original Brunerie number.

Animals often demonstrate a remarkable ability to adapt to their environments during their lifetime. They do so partly due to the evolution of morphological and neural structures. These structures capture features of environments shared between generations to bias and speed up lifetime learning. In this work, we propose a computational model for studying a mechanism that can enable such a process. We adopt a computational framework based on meta reinforcement learning as a model of the interplay between evolution and development. At the evolutionary scale, we evolve reservoirs, a family of recurrent neural networks that differ from conventional networks in that one optimizes not the synaptic weights, but hyperparameters controlling macro-level properties of the resulting network architecture. At the developmental scale, we employ these evolved reservoirs to facilitate the learning of a behavioral policy through Reinforcement Learning (RL). Within an RL agent, a reservoir encodes the environment state before providing it to an action policy. We evaluate our approach on several 2D and 3D simulated environments. Our results show that the evolution of reservoirs can improve the learning of diverse challenging tasks. We study in particular three hypotheses: the use of an architecture combining reservoirs and reinforcement learning could enable (1) solving tasks with partial observability, (2) generating oscillatory dynamics that facilitate the learning of locomotion tasks, and (3) facilitating the generalization of learned behaviors to new tasks unknown during the evolution phase.

This paper introduces a novel ridgelet transform-based method for Poisson image denoising. Our work focuses on harnessing the Poisson noise's unique non-additive and signal-dependent properties, distinguishing it from Gaussian noise. The core of our approach is a new thresholding scheme informed by theoretical insights into the ridgelet coefficients of Poisson-distributed images and adaptive thresholding guided by Stein's method. We verify our theoretical model through numerical experiments and demonstrate the potential of ridgelet thresholding across assorted scenarios. Our findings represent a significant step in enhancing the understanding of Poisson noise and offer an effective denoising method for images corrupted with it.

Humans frequently make decisions with the aid of artificially intelligent (AI) systems. A common pattern is for the AI to recommend an action to the human who retains control over the final decision. Researchers have identified ensuring that a human has appropriate reliance on an AI as a critical component of achieving complementary performance. We argue that the current definition of appropriate reliance used in such research lacks formal statistical grounding and can lead to contradictions. We propose a formal definition of reliance, based on statistical decision theory, which separates the concepts of reliance as the probability the decision-maker follows the AI's prediction from challenges a human may face in differentiating the signals and forming accurate beliefs about the situation. Our definition gives rise to a framework that can be used to guide the design and interpretation of studies on human-AI complementarity and reliance. Using recent AI-advised decision making studies from literature, we demonstrate how our framework can be used to separate the loss due to mis-reliance from the loss due to not accurately differentiating the signals. We evaluate these losses by comparing to a baseline and a benchmark for complementary performance defined by the expected payoff achieved by a rational agent facing the same decision task as the behavioral agents.

Graph Neural Networks (GNNs) have shown promising results on a broad spectrum of applications. Most empirical studies of GNNs directly take the observed graph as input, assuming the observed structure perfectly depicts the accurate and complete relations between nodes. However, graphs in the real world are inevitably noisy or incomplete, which could even exacerbate the quality of graph representations. In this work, we propose a novel Variational Information Bottleneck guided Graph Structure Learning framework, namely VIB-GSL, in the perspective of information theory. VIB-GSL advances the Information Bottleneck (IB) principle for graph structure learning, providing a more elegant and universal framework for mining underlying task-relevant relations. VIB-GSL learns an informative and compressive graph structure to distill the actionable information for specific downstream tasks. VIB-GSL deduces a variational approximation for irregular graph data to form a tractable IB objective function, which facilitates training stability. Extensive experimental results demonstrate that the superior effectiveness and robustness of VIB-GSL.

Data in Knowledge Graphs often represents part of the current state of the real world. Thus, to stay up-to-date the graph data needs to be updated frequently. To utilize information from Knowledge Graphs, many state-of-the-art machine learning approaches use embedding techniques. These techniques typically compute an embedding, i.e., vector representations of the nodes as input for the main machine learning algorithm. If a graph update occurs later on -- specifically when nodes are added or removed -- the training has to be done all over again. This is undesirable, because of the time it takes and also because downstream models which were trained with these embeddings have to be retrained if they change significantly. In this paper, we investigate embedding updates that do not require full retraining and evaluate them in combination with various embedding models on real dynamic Knowledge Graphs covering multiple use cases. We study approaches that place newly appearing nodes optimally according to local information, but notice that this does not work well. However, we find that if we continue the training of the old embedding, interleaved with epochs during which we only optimize for the added and removed parts, we obtain good results in terms of typical metrics used in link prediction. This performance is obtained much faster than with a complete retraining and hence makes it possible to maintain embeddings for dynamic Knowledge Graphs.

Graph neural networks (GNNs) is widely used to learn a powerful representation of graph-structured data. Recent work demonstrates that transferring knowledge from self-supervised tasks to downstream tasks could further improve graph representation. However, there is an inherent gap between self-supervised tasks and downstream tasks in terms of optimization objective and training data. Conventional pre-training methods may be not effective enough on knowledge transfer since they do not make any adaptation for downstream tasks. To solve such problems, we propose a new transfer learning paradigm on GNNs which could effectively leverage self-supervised tasks as auxiliary tasks to help the target task. Our methods would adaptively select and combine different auxiliary tasks with the target task in the fine-tuning stage. We design an adaptive auxiliary loss weighting model to learn the weights of auxiliary tasks by quantifying the consistency between auxiliary tasks and the target task. In addition, we learn the weighting model through meta-learning. Our methods can be applied to various transfer learning approaches, it performs well not only in multi-task learning but also in pre-training and fine-tuning. Comprehensive experiments on multiple downstream tasks demonstrate that the proposed methods can effectively combine auxiliary tasks with the target task and significantly improve the performance compared to state-of-the-art methods.

Graphical causal inference as pioneered by Judea Pearl arose from research on artificial intelligence (AI), and for a long time had little connection to the field of machine learning. This article discusses where links have been and should be established, introducing key concepts along the way. It argues that the hard open problems of machine learning and AI are intrinsically related to causality, and explains how the field is beginning to understand them.