In randomized trials with continuous-valued outcomes the goal is often to estimate the difference in average outcomes between two treatment groups. However, the outcome in some trials is longitudinal, meaning that multiple measurements of the same outcome are taken over time for each subject. The target of inference in this case is often still the difference in averages at a given timepoint. One way to analyze these data is to ignore the measurements at intermediate timepoints and proceed with a standard covariate-adjusted analysis (e.g. ANCOVA) with the complete cases. However, it is generally thought that exploiting information from intermediate timepoints using mixed models for repeated measures (MMRM) a) increases power and b) more naturally "handles" missing data. Here we prove that neither of these conclusions is entirely correct when baseline covariates are adjusted for without including time-by-covariate interactions. We back these claims up with simulations. MMRM provides benefits over complete-cases ANCOVA in many cases, but covariate-time interaction terms should always be included to guarantee the best results.
相關內容
Accelerated degradation tests are used to provide accurate estimation of lifetime properties of highly reliable products within a relatively short testing time. There data from particular tests at high levels of stress (e.\,g.\ temperature, voltage, or vibration) are extrapolated, through a physically meaningful model, to obtain estimates of lifetime quantiles under normal use conditions. In this work, we consider repeated measures accelerated degradation tests with multiple stress variables, where the degradation paths are assumed to follow a linear mixed effects model which is quite common in settings when repeated measures are made. We derive optimal experimental designs for minimizing the asymptotic variance for estimating the median failure time under normal use conditions when the time points for measurements are either fixed in advance or are also to be optimized.
Group equivariant convolutional neural networks (G-CNNs) are generalizations of convolutional neural networks (CNNs) which excel in a wide range of scientific and technical applications by explicitly encoding group symmetries, such as rotations and permutations, in their architectures. Although the success of G-CNNs is driven by the explicit symmetry bias of their convolutional architecture, a recent line of work has proposed that the implicit bias of training algorithms on a particular parameterization (or architecture) is key to understanding generalization for overparameterized neural nets. In this context, we show that $L$-layer full-width linear G-CNNs trained via gradient descent in a binary classification task converge to solutions with low-rank Fourier matrix coefficients, regularized by the $2/L$-Schatten matrix norm. Our work strictly generalizes previous analysis on the implicit bias of linear CNNs to linear G-CNNs over all finite groups, including the challenging setting of non-commutative symmetry groups (such as permutations). We validate our theorems via experiments on a variety of groups and empirically explore more realistic nonlinear networks, which locally capture similar regularization patterns. Finally, we provide intuitive interpretations of our Fourier space implicit regularization results in real space via uncertainty principles.
Self-supervised learning holds promise to revolutionize molecule property prediction - a central task to drug discovery and many more industries - by enabling data efficient learning from scarce experimental data. Despite significant progress, non-pretrained methods can be still competitive in certain settings. We reason that architecture might be a key bottleneck. In particular, enriching the backbone architecture with domain-specific inductive biases has been key for the success of self-supervised learning in other domains. In this spirit, we methodologically explore the design space of the self-attention mechanism tailored to molecular data. We identify a novel variant of self-attention adapted to processing molecules, inspired by the relative self-attention layer, which involves fusing embedded graph and distance relationships between atoms. Our main contribution is Relative Molecule Attention Transformer (R-MAT): a novel Transformer-based model based on the developed self-attention layer that achieves state-of-the-art or very competitive results across a~wide range of molecule property prediction tasks.
Randomized smoothing is currently considered the state-of-the-art method to obtain certifiably robust classifiers. Despite its remarkable performance, the method is associated with various serious problems such as ``certified accuracy waterfalls'', certification vs. accuracy trade-off, or even fairness issues. Input-dependent smoothing approaches have been proposed to overcome these flaws. However, we demonstrate that these methods lack formal guarantees and so the resulting certificates are not justified. We show that the input-dependent smoothing, in general, suffers from the curse of dimensionality, forcing the variance function to have low semi-elasticity. On the other hand, we provide a theoretical and practical framework that enables the usage of input-dependent smoothing even in the presence of the curse of dimensionality, under strict restrictions. We present one concrete design of the smoothing variance and test it on CIFAR10 and MNIST. Our design solves some of the problems of classical smoothing and is formally underlined, yet further improvement of the design is still necessary.
Datasets can be biased due to societal inequities, human biases, under-representation of minorities, etc. Our goal is to certify that models produced by a learning algorithm are pointwise-robust to potential dataset biases. This is a challenging problem: it entails learning models for a large, or even infinite, number of datasets, ensuring that they all produce the same prediction. We focus on decision-tree learning due to the interpretable nature of the models. Our approach allows programmatically specifying bias models across a variety of dimensions (e.g., missing data for minorities), composing types of bias, and targeting bias towards a specific group. To certify robustness, we use a novel symbolic technique to evaluate a decision-tree learner on a large, or infinite, number of datasets, certifying that each and every dataset produces the same prediction for a specific test point. We evaluate our approach on datasets that are commonly used in the fairness literature, and demonstrate our approach's viability on a range of bias models.
An increasing body of research focuses on using neural networks to model time series. A common assumption in training neural networks via maximum likelihood estimation on time series is that the errors across time steps are uncorrelated. However, errors are actually autocorrelated in many cases due to the temporality of the data, which makes such maximum likelihood estimations inaccurate. In this paper, in order to adjust for autocorrelated errors, we propose to learn the autocorrelation coefficient jointly with the model parameters. In our experiments, we verify the effectiveness of our approach on time series forecasting. Results across a wide range of real-world datasets with various state-of-the-art models show that our method enhances performance in almost all cases. Based on these results, we suggest empirical critical values to determine the severity of autocorrelated errors. We also analyze several aspects of our method to demonstrate its advantages. Finally, other time series tasks are also considered to validate that our method is not restricted to only forecasting.
Hierarchical Latent Attribute Models (HLAMs) are a family of discrete latent variable models that are attracting increasing attention in educational, psychological, and behavioral sciences. The key ingredients of an HLAM include a binary structural matrix and a directed acyclic graph specifying hierarchical constraints on the configurations of latent attributes. These components encode practitioners' design information and carry important scientific meanings. Despite the popularity of HLAMs, the fundamental identifiability issue remains unaddressed. The existence of the attribute hierarchy graph leads to degenerate parameter space, and the potentially unknown structural matrix further complicates the identifiability problem. This paper addresses this issue of identifying the latent structure and model parameters underlying an HLAM. We develop sufficient and necessary identifiability conditions. These results directly and sharply characterize the different impacts on identifiability cast by different attribute types in the graph. The proposed conditions not only provide insights into diagnostic test designs under the attribute hierarchy, but also serve as tools to assess the validity of an estimated HLAM.
Recent advances in Transformer models allow for unprecedented sequence lengths, due to linear space and time complexity. In the meantime, relative positional encoding (RPE) was proposed as beneficial for classical Transformers and consists in exploiting lags instead of absolute positions for inference. Still, RPE is not available for the recent linear-variants of the Transformer, because it requires the explicit computation of the attention matrix, which is precisely what is avoided by such methods. In this paper, we bridge this gap and present Stochastic Positional Encoding as a way to generate PE that can be used as a replacement to the classical additive (sinusoidal) PE and provably behaves like RPE. The main theoretical contribution is to make a connection between positional encoding and cross-covariance structures of correlated Gaussian processes. We illustrate the performance of our approach on the Long-Range Arena benchmark and on music generation.
Machine translation is a popular test bed for research in neural sequence-to-sequence models but despite much recent research, there is still a lack of understanding of these models. Practitioners report performance degradation with large beams, the under-estimation of rare words and a lack of diversity in the final translations. Our study relates some of these issues to the inherent uncertainty of the task, due to the existence of multiple valid translations for a single source sentence, and to the extrinsic uncertainty caused by noisy training data. We propose tools and metrics to assess how uncertainty in the data is captured by the model distribution and how it affects search strategies that generate translations. Our results show that search works remarkably well but that the models tend to spread too much probability mass over the hypothesis space. Next, we propose tools to assess model calibration and show how to easily fix some shortcomings of current models. We release both code and multiple human reference translations for two popular benchmarks.
In this paper we introduce a covariance framework for the analysis of EEG and MEG data that takes into account observed temporal stationarity on small time scales and trial-to-trial variations. We formulate a model for the covariance matrix, which is a Kronecker product of three components that correspond to space, time and epochs/trials, and consider maximum likelihood estimation of the unknown parameter values. An iterative algorithm that finds approximations of the maximum likelihood estimates is proposed. We perform a simulation study to assess the performance of the estimator and investigate the influence of different assumptions about the covariance factors on the estimated covariance matrix and on its components. Apart from that, we illustrate our method on real EEG and MEG data sets. The proposed covariance model is applicable in a variety of cases where spontaneous EEG or MEG acts as source of noise and realistic noise covariance estimates are needed for accurate dipole localization, such as in evoked activity studies, or where the properties of spontaneous EEG or MEG are themselves the topic of interest, such as in combined EEG/fMRI experiments in which the correlation between EEG and fMRI signals is investigated.
注冊地址： 北京市海淀區羊坊店路18號2幢3層301-191