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The objective of this work is to achieve sensorless reconstruction of a 3D volume from a set of 2D freehand ultrasound images with deep implicit representation. In contrast to the conventional way that represents a 3D volume as a discrete voxel grid, we do so by parameterizing it as the zero level-set of a continuous function, i.e. implicitly representing the 3D volume as a mapping from the spatial coordinates to the corresponding intensity values. Our proposed model, termed as ImplicitVol, takes a set of 2D scans and their estimated locations in 3D as input, jointly re?fing the estimated 3D locations and learning a full reconstruction of the 3D volume. When testing on real 2D ultrasound images, novel cross-sectional views that are sampled from ImplicitVol show significantly better visual quality than those sampled from existing reconstruction approaches, outperforming them by over 30% (NCC and SSIM), between the output and ground-truth on the 3D volume testing data. The code will be made publicly available.

Deep learning techniques have emerged as a promising approach to highly accelerated MRI. However, recent reconstruction challenges have shown several drawbacks in current deep learning approaches, including the loss of fine image details even using models that perform well in terms of global quality metrics. In this study, we propose an end-to-end deep learning framework for image reconstruction and pathology detection, which enables a clinically aware evaluation of deep learning reconstruction quality. The solution is demonstrated for a use case in detecting meniscal tears on knee MRI studies, ultimately finding a loss of fine image details with common reconstruction methods expressed as a reduced ability to detect important pathology like meniscal tears. Despite the common practice of quantitative reconstruction methodology evaluation with metrics such as SSIM, impaired pathology detection as an automated pathology-based reconstruction evaluation approach suggests existing quantitative methods do not capture clinically important reconstruction outcomes.

Bayesian Networks (BNs) have become increasingly popular over the last few decades as a tool for reasoning under uncertainty in fields as diverse as medicine, biology, epidemiology, economics and the social sciences. This is especially true in real-world areas where we seek to answer complex questions based on hypothetical evidence to determine actions for intervention. However, determining the graphical structure of a BN remains a major challenge, especially when modelling a problem under causal assumptions. Solutions to this problem include the automated discovery of BN graphs from data, constructing them based on expert knowledge, or a combination of the two. This paper provides a comprehensive review of combinatoric algorithms proposed for learning BN structure from data, describing 61 algorithms including prototypical, well-established and state-of-the-art approaches. The basic approach of each algorithm is described in consistent terms, and the similarities and differences between them highlighted. Methods of evaluating algorithms and their comparative performance are discussed including the consistency of claims made in the literature. Approaches for dealing with data noise in real-world datasets and incorporating expert knowledge into the learning process are also covered.

Neural Radiance Fields (NeRF) has become a popular framework for learning implicit 3D representations and addressing different tasks such as novel-view synthesis or depth-map estimation. However, in downstream applications where decisions need to be made based on automatic predictions, it is critical to leverage the confidence associated with the model estimations. Whereas uncertainty quantification is a long-standing problem in Machine Learning, it has been largely overlooked in the recent NeRF literature. In this context, we propose Stochastic Neural Radiance Fields (S-NeRF), a generalization of standard NeRF that learns a probability distribution over all the possible radiance fields modeling the scene. This distribution allows to quantify the uncertainty associated with the scene information provided by the model. S-NeRF optimization is posed as a Bayesian learning problem which is efficiently addressed using the Variational Inference framework. Exhaustive experiments over benchmark datasets demonstrate that S-NeRF is able to provide more reliable predictions and confidence values than generic approaches previously proposed for uncertainty estimation in other domains.

Structures in the solar corona are the main drivers of space weather processes that might directly or indirectly affect the Earth. Thanks to the most recent space-based solar observatories, with capabilities to acquire high-resolution images continuously, the structures in the solar corona can be monitored over the years with a time resolution of minutes. For this purpose, we have developed a method for automatic segmentation of solar corona structures observed in EUV spectrum that is based on a deep learning approach utilizing Convolutional Neural Networks. The available input datasets have been examined together with our own dataset based on the manual annotation of the target structures. Indeed, the input dataset is the main limitation of the developed model's performance. Our \textit{SCSS-Net} model provides results for coronal holes and active regions that could be compared with other generally used methods for automatic segmentation. Even more, it provides a universal procedure to identify structures in the solar corona with the help of the transfer learning technique. The outputs of the model can be then used for further statistical studies of connections between solar activity and the influence of space weather on Earth.

Point cloud is point sets defined in 3D metric space. Point cloud has become one of the most significant data format for 3D representation. Its gaining increased popularity as a result of increased availability of acquisition devices, such as LiDAR, as well as increased application in areas such as robotics, autonomous driving, augmented and virtual reality. Deep learning is now the most powerful tool for data processing in computer vision, becoming the most preferred technique for tasks such as classification, segmentation, and detection. While deep learning techniques are mainly applied to data with a structured grid, point cloud, on the other hand, is unstructured. The unstructuredness of point clouds makes use of deep learning for its processing directly very challenging. Earlier approaches overcome this challenge by preprocessing the point cloud into a structured grid format at the cost of increased computational cost or lost of depth information. Recently, however, many state-of-the-arts deep learning techniques that directly operate on point cloud are being developed. This paper contains a survey of the recent state-of-the-art deep learning techniques that mainly focused on point cloud data. We first briefly discussed the major challenges faced when using deep learning directly on point cloud, we also briefly discussed earlier approaches which overcome the challenges by preprocessing the point cloud into a structured grid. We then give the review of the various state-of-the-art deep learning approaches that directly process point cloud in its unstructured form. We introduced the popular 3D point cloud benchmark datasets. And we also further discussed the application of deep learning in popular 3D vision tasks including classification, segmentation and detection.

Real-world applications often combine learning and optimization problems on graphs. For instance, our objective may be to cluster the graph in order to detect meaningful communities (or solve other common graph optimization problems such as facility location, maxcut, and so on). However, graphs or related attributes are often only partially observed, introducing learning problems such as link prediction which must be solved prior to optimization. We propose an approach to integrate a differentiable proxy for common graph optimization problems into training of machine learning models for tasks such as link prediction. This allows the model to focus specifically on the downstream task that its predictions will be used for. Experimental results show that our end-to-end system obtains better performance on example optimization tasks than can be obtained by combining state of the art link prediction methods with expert-designed graph optimization algorithms.

Graph neural networks (GNNs) are a popular class of machine learning models whose major advantage is their ability to incorporate a sparse and discrete dependency structure between data points. Unfortunately, GNNs can only be used when such a graph-structure is available. In practice, however, real-world graphs are often noisy and incomplete or might not be available at all. With this work, we propose to jointly learn the graph structure and the parameters of graph convolutional networks (GCNs) by approximately solving a bilevel program that learns a discrete probability distribution on the edges of the graph. This allows one to apply GCNs not only in scenarios where the given graph is incomplete or corrupted but also in those where a graph is not available. We conduct a series of experiments that analyze the behavior of the proposed method and demonstrate that it outperforms related methods by a significant margin.

With the advent of deep neural networks, learning-based approaches for 3D reconstruction have gained popularity. However, unlike for images, in 3D there is no canonical representation which is both computationally and memory efficient yet allows for representing high-resolution geometry of arbitrary topology. Many of the state-of-the-art learning-based 3D reconstruction approaches can hence only represent very coarse 3D geometry or are limited to a restricted domain. In this paper, we propose occupancy networks, a new representation for learning-based 3D reconstruction methods. Occupancy networks implicitly represent the 3D surface as the continuous decision boundary of a deep neural network classifier. In contrast to existing approaches, our representation encodes a description of the 3D output at infinite resolution without excessive memory footprint. We validate that our representation can efficiently encode 3D structure and can be inferred from various kinds of input. Our experiments demonstrate competitive results, both qualitatively and quantitatively, for the challenging tasks of 3D reconstruction from single images, noisy point clouds and coarse discrete voxel grids. We believe that occupancy networks will become a useful tool in a wide variety of learning-based 3D tasks.