Short-term forecasts of infectious disease spread are a critical component in risk evaluation and public health decision making. While different models for short-term forecasting have been developed, open questions about their relative performance remain. Here, we compare short-term probabilistic forecasts of popular mechanistic models based on the renewal equation with forecasts of statistical time series models. Our empirical comparison is based on data of the daily incidence of COVID-19 across six large US states over the first pandemic year. We find that, on average, probabilistic forecasts from statistical time series models are overall at least as accurate as forecasts from mechanistic models. Moreover, statistical time series models better capture volatility. Our findings suggest that domain knowledge, which is integrated into mechanistic models by making assumptions about disease dynamics, does not improve short-term forecasts of disease incidence. We note, however, that forecasting is often only one of many objectives and thus mechanistic models remain important, for example, to model the impact of vaccines or the emergence of new variants.
相關內容
Deep neural networks offer an alternative paradigm for modeling weather conditions. The ability of neural models to make a prediction in less than a second once the data is available and to do so with very high temporal and spatial resolution, and the ability to learn directly from atmospheric observations, are just some of these models' unique advantages. Neural models trained using atmospheric observations, the highest fidelity and lowest latency data, have to date achieved good performance only up to twelve hours of lead time when compared with state-of-the-art probabilistic Numerical Weather Prediction models and only for the sole variable of precipitation. In this paper, we present MetNet-3 that extends significantly both the lead time range and the variables that an observation based neural model can predict well. MetNet-3 learns from both dense and sparse data sensors and makes predictions up to 24 hours ahead for precipitation, wind, temperature and dew point. MetNet-3 introduces a key densification technique that implicitly captures data assimilation and produces spatially dense forecasts in spite of the network training on extremely sparse targets. MetNet-3 has a high temporal and spatial resolution of, respectively, up to 2 minutes and 1 km as well as a low operational latency. We find that MetNet-3 is able to outperform the best single- and multi-member NWPs such as HRRR and ENS over the CONUS region for up to 24 hours ahead setting a new performance milestone for observation based neural models. MetNet-3 is operational and its forecasts are served in Google Search in conjunction with other models.
Long-term time series forecasting plays an important role in various real-world scenarios. Recent deep learning methods for long-term series forecasting tend to capture the intricate patterns of time series by decomposition-based or sampling-based methods. However, most of the extracted patterns may include unpredictable noise and lack good interpretability. Moreover, the multivariate series forecasting methods usually ignore the individual characteristics of each variate, which may affecting the prediction accuracy. To capture the intrinsic patterns of time series, we propose a novel deep learning network architecture, named Multi-resolution Periodic Pattern Network (MPPN), for long-term series forecasting. We first construct context-aware multi-resolution semantic units of time series and employ multi-periodic pattern mining to capture the key patterns of time series. Then, we propose a channel adaptive module to capture the perceptions of multivariate towards different patterns. In addition, we present an entropy-based method for evaluating the predictability of time series and providing an upper bound on the prediction accuracy before forecasting. Our experimental evaluation on nine real-world benchmarks demonstrated that MPPN significantly outperforms the state-of-the-art Transformer-based, decomposition-based and sampling-based methods for long-term series forecasting.
Recently, hybrid metaheuristics have become a trend in operations research. A successful example combines the Greedy Randomized Adaptive Search Procedures (GRASP) and data mining techniques, where frequent patterns found in high-quality solutions can lead to an efficient exploration of the search space, along with a significant reduction of computational time. In this work, a GRASP-based state-of-the-art heuristic for the Minimum Latency Problem (MLP) is improved by means of data mining techniques for two MLP variants. Computational experiments showed that the approaches with data mining were able to match or improve the solution quality for a large number of instances, together with a substantial reduction of running time. In addition, 88 new cost values of solutions are introduced into the literature. To support our results, tests of statistical significance, impact of using mined patterns, equal time comparisons and time-to-target plots are provided.
Hospitalisations from COVID-19 with Omicron sub-lineages have put a sustained pressure on the English healthcare system. Understanding the expected healthcare demand enables more effective and timely planning from public health. We collect syndromic surveillance sources, which include online search data, NHS 111 telephonic and online triages. Incorporating this data we explore generalised additive models, generalised linear mixed-models, penalised generalised linear models and model ensemble methods to forecast over a two-week forecast horizon at an NHS Trust level. Furthermore, we showcase how model combinations improve forecast scoring through a mean ensemble, weighted ensemble, and ensemble by regression. Validated over multiple Omicron waves, at different spatial scales, we show that leading indicators can improve performance of forecasting models, particularly at epidemic changepoints. Using a variety of scoring rules, we show that ensemble approaches outperformed all individual models, providing higher performance at a 21-day window than the corresponding individual models at 14-days. We introduce a modelling structure used by public health officials in England in 2022 to inform NHS healthcare strategy and policy decision making. This paper explores the significance of ensemble methods to improve forecasting performance and how novel syndromic surveillance can be practically applied in epidemic forecasting.
We use "glide charts" (plots of sequences of root mean squared forecast errors as the target date is approached) to evaluate and compare fixed-target forecasts of Arctic sea ice. We first use them to evaluate the simple feature-engineered linear regression (FELR) forecasts of Diebold and Goebel (2021), and to compare FELR forecasts to naive pure-trend benchmark forecasts. Then we introduce a much more sophisticated feature-engineered machine learning (FEML) model, and we use glide charts to evaluate FEML forecasts and compare them to a FELR benchmark. Our substantive results include the frequent appearance of predictability thresholds, which differ across months, meaning that accuracy initially fails to improve as the target date is approached but then increases progressively once a threshold lead time is crossed. Also, we find that FEML can improve appreciably over FELR when forecasting "turning point" months in the annual cycle at horizons of one to three months ahead.
Transformers have achieved superior performances in many tasks in natural language processing and computer vision, which also intrigues great interests in the time series community. Among multiple advantages of transformers, the ability to capture long-range dependencies and interactions is especially attractive for time series modeling, leading to exciting progress in various time series applications. In this paper, we systematically review transformer schemes for time series modeling by highlighting their strengths as well as limitations through a new taxonomy to summarize existing time series transformers in two perspectives. From the perspective of network modifications, we summarize the adaptations of module level and architecture level of the time series transformers. From the perspective of applications, we categorize time series transformers based on common tasks including forecasting, anomaly detection, and classification. Empirically, we perform robust analysis, model size analysis, and seasonal-trend decomposition analysis to study how Transformers perform in time series. Finally, we discuss and suggest future directions to provide useful research guidance. To the best of our knowledge, this paper is the first work to comprehensively and systematically summarize the recent advances of Transformers for modeling time series data. We hope this survey will ignite further research interests in time series Transformers.
Graph machine learning has been extensively studied in both academic and industry. However, as the literature on graph learning booms with a vast number of emerging methods and techniques, it becomes increasingly difficult to manually design the optimal machine learning algorithm for different graph-related tasks. To tackle the challenge, automated graph machine learning, which aims at discovering the best hyper-parameter and neural architecture configuration for different graph tasks/data without manual design, is gaining an increasing number of attentions from the research community. In this paper, we extensively discuss automated graph machine approaches, covering hyper-parameter optimization (HPO) and neural architecture search (NAS) for graph machine learning. We briefly overview existing libraries designed for either graph machine learning or automated machine learning respectively, and further in depth introduce AutoGL, our dedicated and the world's first open-source library for automated graph machine learning. Last but not least, we share our insights on future research directions for automated graph machine learning. This paper is the first systematic and comprehensive discussion of approaches, libraries as well as directions for automated graph machine learning.
Traffic forecasting is an important factor for the success of intelligent transportation systems. Deep learning models including convolution neural networks and recurrent neural networks have been applied in traffic forecasting problems to model the spatial and temporal dependencies. In recent years, to model the graph structures in the transportation systems as well as the contextual information, graph neural networks (GNNs) are introduced as new tools and have achieved the state-of-the-art performance in a series of traffic forecasting problems. In this survey, we review the rapidly growing body of recent research using different GNNs, e.g., graph convolutional and graph attention networks, in various traffic forecasting problems, e.g., road traffic flow and speed forecasting, passenger flow forecasting in urban rail transit systems, demand forecasting in ride-hailing platforms, etc. We also present a collection of open data and source resources for each problem, as well as future research directions. To the best of our knowledge, this paper is the first comprehensive survey that explores the application of graph neural networks for traffic forecasting problems. We have also created a public Github repository to update the latest papers, open data and source resources.
Modeling multivariate time series has long been a subject that has attracted researchers from a diverse range of fields including economics, finance, and traffic. A basic assumption behind multivariate time series forecasting is that its variables depend on one another but, upon looking closely, it is fair to say that existing methods fail to fully exploit latent spatial dependencies between pairs of variables. In recent years, meanwhile, graph neural networks (GNNs) have shown high capability in handling relational dependencies. GNNs require well-defined graph structures for information propagation which means they cannot be applied directly for multivariate time series where the dependencies are not known in advance. In this paper, we propose a general graph neural network framework designed specifically for multivariate time series data. Our approach automatically extracts the uni-directed relations among variables through a graph learning module, into which external knowledge like variable attributes can be easily integrated. A novel mix-hop propagation layer and a dilated inception layer are further proposed to capture the spatial and temporal dependencies within the time series. The graph learning, graph convolution, and temporal convolution modules are jointly learned in an end-to-end framework. Experimental results show that our proposed model outperforms the state-of-the-art baseline methods on 3 of 4 benchmark datasets and achieves on-par performance with other approaches on two traffic datasets which provide extra structural information.
Multivariate time series forecasting is extensively studied throughout the years with ubiquitous applications in areas such as finance, traffic, environment, etc. Still, concerns have been raised on traditional methods for incapable of modeling complex patterns or dependencies lying in real word data. To address such concerns, various deep learning models, mainly Recurrent Neural Network (RNN) based methods, are proposed. Nevertheless, capturing extremely long-term patterns while effectively incorporating information from other variables remains a challenge for time-series forecasting. Furthermore, lack-of-explainability remains one serious drawback for deep neural network models. Inspired by Memory Network proposed for solving the question-answering task, we propose a deep learning based model named Memory Time-series network (MTNet) for time series forecasting. MTNet consists of a large memory component, three separate encoders, and an autoregressive component to train jointly. Additionally, the attention mechanism designed enable MTNet to be highly interpretable. We can easily tell which part of the historic data is referenced the most.
注冊地址： 北京市海淀區羊坊店路18號2幢3層301-191