Modern neural recording techniques allow neuroscientists to obtain spiking activity from many hundreds of neurons simultaneously over long time periods, and new statistical methods are needed to understand structure of the large-scale data, in terms of both neuron numbers and recording duration. Here, we develop a bi-clustering method to cluster the neural spiking activity both spatially and temporally, according to their low-dimensional latent structures. The spatial (neuron) clusters are defined by the latent trajectories within each neural population, while the temporal (state) clusters are defined by local linear dynamics manner across the population. To flexibly extracting the bi-clustering structure, we build the model non-parametrically, and develop an efficient Markov chain Monte Carlo (MCMC) algorithm to sample the posterior distributions of model parameters. Validating our proposed MCMC algorithm through simulations, we find the method can recover unknown parameters and true bi-clustering structures successfully. We then apply the proposed bi-clustering method for counting series to multi-regional neural recordings under different experiment settings, where we find that simultaneously considering latent trajectories and spatial-temporal clustering structures can provide us with a more accurate and interpretable results. Overall, the proposed method provides scientific insights for large-scale (counting) time series with elongated recording periods, and it can have application beyond neuroscience.
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Automatically highlighting words that cause semantic differences between two documents could be useful for a wide range of applications. We formulate recognizing semantic differences (RSD) as a token-level regression task and study three unsupervised approaches that rely on a masked language model. To assess the approaches, we begin with basic English sentences and gradually move to more complex, cross-lingual document pairs. Our results show that an approach based on word alignment and sentence-level contrastive learning has a robust correlation to gold labels. However, all unsupervised approaches still leave a large margin of improvement. Code to reproduce our experiments is available at //github.com/ZurichNLP/recognizing-semantic-differences
We introduce two new stochastic conjugate frameworks for a class of nonconvex and possibly also nonsmooth optimization problems. These frameworks are built upon Stochastic Recursive Gradient Algorithm (SARAH) and we thus refer to them as Acc-Prox-CG-SARAH and Acc-Prox-CG-SARAH-RS, respectively. They are efficiently accelerated, easy to implement, tune free and can be smoothly extended and modified. We devise a deterministic restart scheme for stochastic optimization and apply it in our second stochastic conjugate framework, which serves the key difference between the two approaches. In addition, we apply the ProbAbilistic Gradient Estimator (PAGE) and further develop a practical variant, denoted as Acc-Prox-CG-SARAH-ST, in order to reduce potential computational overhead. We provide comprehensive and rigorous convergence analysis for all three approaches and establish linear convergence rates for unconstrained minimization problem with nonconvex and nonsmooth objective functions. Experiments have demonstrated that Acc-Prox-CG-SARAH and Acc-Prox-CG-SARAH-RS both outperform state-of-art methods consistently and Acc-Prox-CG-SARAH-ST can as well achieve comparable convergence speed. In terms of theory and experiments, we verify the strong computational efficiency of the deterministic restart scheme in stochastic optimization methods.
With the emergence of powerful representations of continuous data in the form of neural fields, there is a need for discretization invariant learning: an approach for learning maps between functions on continuous domains without being sensitive to how the function is sampled. We present a new framework for understanding and designing discretization invariant neural networks (DI-Nets), which generalizes many discrete networks such as convolutional neural networks as well as continuous networks such as neural operators. Our analysis establishes upper bounds on the deviation in model outputs under different finite discretizations, and highlights the central role of point set discrepancy in characterizing such bounds. This insight leads to the design of a family of neural networks driven by numerical integration via quasi-Monte Carlo sampling with discretizations of low discrepancy. We prove by construction that DI-Nets universally approximate a large class of maps between integrable function spaces, and show that discretization invariance also describes backpropagation through such models. Applied to neural fields, convolutional DI-Nets can learn to classify and segment visual data under various discretizations, and sometimes generalize to new types of discretizations at test time. Code: //github.com/clintonjwang/DI-net.
Electric consumption prediction methods are investigated for many reasons such as decision-making related to energy efficiency as well as for anticipating demand in the energy market dynamics. The objective of the present work is the comparison between two Deep Learning models, namely the Long Short-Term Memory (LSTM) and Bi-directional LSTM (BLSTM) for univariate electric consumption Time Series (TS) short-term forecast. The Data Sets (DSs) were selected for their different contexts and scales, aiming the assessment of the models' robustness. Four DSs were used, related to the power consumption of: (a) a household in France; (b) a university building in Santar\'em, Brazil; (c) the T\'etouan city zones, in Morocco; and (c) the Singapore aggregated electric demand. The metrics RMSE, MAE, MAPE and R2 were calculated in a TS cross-validation scheme. The Friedman's test was applied to normalized RMSE (NRMSE) results, showing that BLSTM outperforms LSTM with statistically significant difference (p = 0.0455), corroborating the fact that bidirectional weight updating improves significantly the LSTM performance concerning different scales of electric power consumption.
The ability to measure the satisfaction of (groups of) voters is a crucial prerequisite for formulating proportionality axioms in approval-based participatory budgeting elections. Two common - but very different - ways to measure the satisfaction of a voter consider (i) the number of approved projects and (ii) the total cost of approved projects, respectively. In general, it is difficult to decide which measure of satisfaction best reflects the voters' true utilities. In this paper, we study proportionality axioms with respect to large classes of approval-based satisfaction functions. We establish logical implications among our axioms and related notions from the literature, and we ask whether outcomes can be achieved that are proportional with respect to more than one satisfaction function. We show that this is impossible for the two commonly used satisfaction functions when considering proportionality notions based on extended justified representation, but achievable for a notion based on proportional justified representation. For the latter result, we introduce a strengthening of priceability and show that it is satisfied by several polynomial-time computable rules, including the Method of Equal Shares and Phragm\`en's sequential rule.
Medical image segmentation aims to delineate the anatomical or pathological structures of interest, playing a crucial role in clinical diagnosis. A substantial amount of high-quality annotated data is crucial for constructing high-precision deep segmentation models. However, medical annotation is highly cumbersome and time-consuming, especially for medical videos or 3D volumes, due to the huge labeling space and poor inter-frame consistency. Recently, a fundamental task named Moving Object Segmentation (MOS) has made significant advancements in natural images. Its objective is to delineate moving objects from the background within image sequences, requiring only minimal annotations. In this paper, we propose the first foundation model, named iMOS, for MOS in medical images. Extensive experiments on a large multi-modal medical dataset validate the effectiveness of the proposed iMOS. Specifically, with the annotation of only a small number of images in the sequence, iMOS can achieve satisfactory tracking and segmentation performance of moving objects throughout the entire sequence in bi-directions. We hope that the proposed iMOS can help accelerate the annotation speed of experts, and boost the development of medical foundation models.
Recently, graph neural networks have been gaining a lot of attention to simulate dynamical systems due to their inductive nature leading to zero-shot generalizability. Similarly, physics-informed inductive biases in deep-learning frameworks have been shown to give superior performance in learning the dynamics of physical systems. There is a growing volume of literature that attempts to combine these two approaches. Here, we evaluate the performance of thirteen different graph neural networks, namely, Hamiltonian and Lagrangian graph neural networks, graph neural ODE, and their variants with explicit constraints and different architectures. We briefly explain the theoretical formulation highlighting the similarities and differences in the inductive biases and graph architecture of these systems. We evaluate these models on spring, pendulum, gravitational, and 3D deformable solid systems to compare the performance in terms of rollout error, conserved quantities such as energy and momentum, and generalizability to unseen system sizes. Our study demonstrates that GNNs with additional inductive biases, such as explicit constraints and decoupling of kinetic and potential energies, exhibit significantly enhanced performance. Further, all the physics-informed GNNs exhibit zero-shot generalizability to system sizes an order of magnitude larger than the training system, thus providing a promising route to simulate large-scale realistic systems.
Heterogeneous graph neural networks (HGNNs) as an emerging technique have shown superior capacity of dealing with heterogeneous information network (HIN). However, most HGNNs follow a semi-supervised learning manner, which notably limits their wide use in reality since labels are usually scarce in real applications. Recently, contrastive learning, a self-supervised method, becomes one of the most exciting learning paradigms and shows great potential when there are no labels. In this paper, we study the problem of self-supervised HGNNs and propose a novel co-contrastive learning mechanism for HGNNs, named HeCo. Different from traditional contrastive learning which only focuses on contrasting positive and negative samples, HeCo employs cross-viewcontrastive mechanism. Specifically, two views of a HIN (network schema and meta-path views) are proposed to learn node embeddings, so as to capture both of local and high-order structures simultaneously. Then the cross-view contrastive learning, as well as a view mask mechanism, is proposed, which is able to extract the positive and negative embeddings from two views. This enables the two views to collaboratively supervise each other and finally learn high-level node embeddings. Moreover, two extensions of HeCo are designed to generate harder negative samples with high quality, which further boosts the performance of HeCo. Extensive experiments conducted on a variety of real-world networks show the superior performance of the proposed methods over the state-of-the-arts.
We introduce a multi-task setup of identifying and classifying entities, relations, and coreference clusters in scientific articles. We create SciERC, a dataset that includes annotations for all three tasks and develop a unified framework called Scientific Information Extractor (SciIE) for with shared span representations. The multi-task setup reduces cascading errors between tasks and leverages cross-sentence relations through coreference links. Experiments show that our multi-task model outperforms previous models in scientific information extraction without using any domain-specific features. We further show that the framework supports construction of a scientific knowledge graph, which we use to analyze information in scientific literature.
We propose a novel approach to multimodal sentiment analysis using deep neural networks combining visual analysis and natural language processing. Our goal is different than the standard sentiment analysis goal of predicting whether a sentence expresses positive or negative sentiment; instead, we aim to infer the latent emotional state of the user. Thus, we focus on predicting the emotion word tags attached by users to their Tumblr posts, treating these as "self-reported emotions." We demonstrate that our multimodal model combining both text and image features outperforms separate models based solely on either images or text. Our model's results are interpretable, automatically yielding sensible word lists associated with emotions. We explore the structure of emotions implied by our model and compare it to what has been posited in the psychology literature, and validate our model on a set of images that have been used in psychology studies. Finally, our work also provides a useful tool for the growing academic study of images - both photographs and memes - on social networks.
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