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The Segment Anything Model (SAM) has recently emerged as a significant breakthrough in foundation models, demonstrating remarkable zero-shot performance in object segmentation tasks. While SAM is designed for generalization, it exhibits limitations in handling specific medical imaging tasks that require fine-structure segmentation or precise boundaries. In this paper, we focus on the task of cardiac magnetic resonance imaging (cMRI) short-axis view segmentation using the SAM foundation model. We conduct a comprehensive investigation of the impact of different prompting strategies (including bounding boxes, positive points, negative points, and their combinations) on segmentation performance. We evaluate on two public datasets using the baseline model and models fine-tuned with varying amounts of annotated data, ranging from a limited number of volumes to a fully annotated dataset. Our findings indicate that prompting strategies significantly influence segmentation performance. Combining positive points with either bounding boxes or negative points shows substantial benefits, but little to no benefit when combined simultaneously. We further observe that fine-tuning SAM with a few annotated volumes improves segmentation performance when properly prompted. Specifically, fine-tuning with bounding boxes has a positive impact, while fine-tuning without bounding boxes leads to worse results compared to baseline.

In the study of the brain, there is a hypothesis that sparse coding is realized in information representation of external stimuli, which is experimentally confirmed for visual stimulus recently. However, unlike the specific functional region in the brain, sparse coding in information processing in the whole brain has not been clarified sufficiently. In this study, we investigate the validity of sparse coding in the whole human brain by applying various matrix factorization methods to functional magnetic resonance imaging data of neural activities in the whole human brain. The result suggests sparse coding hypothesis in information representation in the whole human brain, because extracted features from sparse MF method, SparsePCA or MOD under high sparsity setting, or approximate sparse MF method, FastICA, can classify external visual stimuli more accurately than non-sparse MF method or sparse MF method under low sparsity setting.

While question answering over knowledge bases (KBQA) has shown progress in addressing factoid questions, KBQA with numerical reasoning remains relatively unexplored. In this paper, we focus on the complex numerical reasoning in KBQA and propose a new task, NR-KBQA, which necessitates the ability to perform both multi-hop reasoning and numerical reasoning. We design a logic form in Python format called PyQL to represent the reasoning process of numerical reasoning questions. To facilitate the development of NR-KBQA, we present a large dataset called MarkQA, which is automatically constructed from a small set of seeds. Each question in MarkQA is equipped with its corresponding SPARQL query, alongside the step-by-step reasoning process in the QDMR format and PyQL program. Experimental results of some state-of-the-art QA methods on the MarkQA show that complex numerical reasoning in KBQA faces great challenges.

Modeling excess remains to be an important topic in insurance data modeling. Among the alternatives of modeling excess, the Peaks Over Threshold (POT) framework with Generalized Pareto distribution (GPD) is regarded as an efficient approach due to its flexibility. However, the selection of an appropriate threshold for such framework is a major difficulty. To address such difficulty, we applied several accumulation tests along with Anderson-Darling test to determine an optimal threshold. Based on the selected thresholds, the fitted GPD with the estimated quantiles can be found. We applied the procedure to the well-known Norwegian Fire Insurance data and constructed the confidence intervals for the Value-at-Risks (VaR). The accumulation test approach provides satisfactory performance in modeling the high quantiles of Norwegian Fire Insurance data compared to the previous graphical methods.

Sample selection models represent a common methodology for correcting bias induced by data missing not at random. It is well known that these models are not empirically identifiable without exclusion restrictions. In other words, some variables predictive of missingness do not affect the outcome model of interest. The drive to establish this requirement often leads to the inclusion of irrelevant variables in the model. A recent proposal uses adaptive LASSO to circumvent this problem, but its performance depends on the so-called covariance assumption, which can be violated in small to moderate samples. Additionally, there are no tools yet for post-selection inference for this model. To address these challenges, we propose two families of spike-and-slab priors to conduct Bayesian variable selection in sample selection models. These prior structures allow for constructing a Gibbs sampler with tractable conditionals, which is scalable to the dimensions of practical interest. We illustrate the performance of the proposed methodology through a simulation study and present a comparison against adaptive LASSO and stepwise selection. We also provide two applications using publicly available real data. An implementation and code to reproduce the results in this paper can be found at //github.com/adam-iqbal/selection-spike-slab

Influenced mixed moving average fields are a versatile modeling class for spatio-temporal data. However, their predictive distribution is not generally known. Under this modeling assumption, we define a novel spatio-temporal embedding and a theory-guided machine learning approach that employs a generalized Bayesian algorithm to make ensemble forecasts. We employ Lipschitz predictors and determine fixed-time and any-time PAC Bayesian bounds in the batch learning setting. Performing causal forecast is a highlight of our methodology as its potential application to data with spatial and temporal short and long-range dependence. We then test the performance of our learning methodology by using linear predictors and data sets simulated from a spatio-temporal Ornstein-Uhlenbeck process.

Safeguarding privacy in sensitive training data is paramount, particularly in the context of generative modeling. This is done through either differentially private stochastic gradient descent, or with a differentially private metric for training models or generators. In this paper, we introduce a novel differentially private generative modeling approach based on parameter-free gradient flows in the space of probability measures. The proposed algorithm is a new discretized flow which operates through a particle scheme, utilizing drift derived from the sliced Wasserstein distance and computed in a private manner. Our experiments show that compared to a generator-based model, our proposed model can generate higher-fidelity data at a low privacy budget, offering a viable alternative to generator-based approaches.

Recording the provenance of scientific computation results is key to the support of traceability, reproducibility and quality assessment of data products. Several data models have been explored to address this need, providing representations of workflow plans and their executions as well as means of packaging the resulting information for archiving and sharing. However, existing approaches tend to lack interoperable adoption across workflow management systems. In this work we present Workflow Run RO-Crate, an extension of RO-Crate (Research Object Crate) and Schema.org to capture the provenance of the execution of computational workflows at different levels of granularity and bundle together all their associated products (inputs, outputs, code, etc.). The model is supported by a diverse, open community that runs regular meetings, discussing development, maintenance and adoption aspects. Workflow Run RO-Crate is already implemented by several workflow management systems, allowing interoperable comparisons between workflow runs from heterogeneous systems. We describe the model, its alignment to standards such as W3C PROV, and its implementation in six workflow systems. Finally, we illustrate the application of Workflow Run RO-Crate in two use cases of machine learning in the digital image analysis domain. A corresponding RO-Crate for this article is at //w3id.org/ro/doi/10.5281/zenodo.10368989

Link prediction on knowledge graphs (KGs) is a key research topic. Previous work mainly focused on binary relations, paying less attention to higher-arity relations although they are ubiquitous in real-world KGs. This paper considers link prediction upon n-ary relational facts and proposes a graph-based approach to this task. The key to our approach is to represent the n-ary structure of a fact as a small heterogeneous graph, and model this graph with edge-biased fully-connected attention. The fully-connected attention captures universal inter-vertex interactions, while with edge-aware attentive biases to particularly encode the graph structure and its heterogeneity. In this fashion, our approach fully models global and local dependencies in each n-ary fact, and hence can more effectively capture associations therein. Extensive evaluation verifies the effectiveness and superiority of our approach. It performs substantially and consistently better than current state-of-the-art across a variety of n-ary relational benchmarks. Our code is publicly available.

Recently, deep multiagent reinforcement learning (MARL) has become a highly active research area as many real-world problems can be inherently viewed as multiagent systems. A particularly interesting and widely applicable class of problems is the partially observable cooperative multiagent setting, in which a team of agents learns to coordinate their behaviors conditioning on their private observations and commonly shared global reward signals. One natural solution is to resort to the centralized training and decentralized execution paradigm. During centralized training, one key challenge is the multiagent credit assignment: how to allocate the global rewards for individual agent policies for better coordination towards maximizing system-level's benefits. In this paper, we propose a new method called Q-value Path Decomposition (QPD) to decompose the system's global Q-values into individual agents' Q-values. Unlike previous works which restrict the representation relation of the individual Q-values and the global one, we leverage the integrated gradient attribution technique into deep MARL to directly decompose global Q-values along trajectory paths to assign credits for agents. We evaluate QPD on the challenging StarCraft II micromanagement tasks and show that QPD achieves the state-of-the-art performance in both homogeneous and heterogeneous multiagent scenarios compared with existing cooperative MARL algorithms.