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The trend of deploying digital systems in numerous industries has induced a hike in recording digital information. The health sector has observed an extensive adoption of digital devices and systems that generate large volumes of personal medical records. Electronic health records contain valuable information for retrospective and prospective analysis that is often not entirely exploited because of the dense information storage. The crude purpose of condensing health records is to select the information that holds most characteristics of the original documents based on reported disease. These summaries may boost diagnosis and extend a doctor's time with the patient during a high workload situation like the COVID-19 pandemic. In this paper, we propose applying a multi-head attention-based mechanism to perform extractive summarization of meaningful phrases in clinical notes. This method finds major sentences for a summary by correlating tokens, segments, and positional embeddings. The model outputs attention scores that are statistically transformed to extract key phrases and can be used to projection on the heat-mapping tool for visual and human use.

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2021 年 11 月 23 日

Recently, biclustering is one of the hot topics in bioinformatics and takes the attention of authors from several different disciplines. Hence, many different methodologies from a variety of disciplines are proposed as a solution to the biclustering problem. As a consequence of this issue, a variety of solutions makes it harder to evaluate the proposed methods. With this review paper, we are aimed to discuss both analysis and visualization of biclustering as a guide for the comparisons between brand new and existing biclustering algorithms. Additionally, we concentrate on the tools that provide visualizations with accompanied analysis techniques. Through the paper, we give several references that are also a short review of the state of the art for the ones who will pursue research on biclustering. The Paper outline is as follows; we first give the visualization and analysis methods, then we evaluate each proposed tool with the visualization contribution and analysis options, finally, we discuss future directions for biclustering and we propose standards for future work.

Automatic summarization of legal texts is an important and still a challenging task since legal documents are often long and complicated with unusual structures and styles. Recent advances of deep models trained end-to-end with differentiable losses can well-summarize natural text, yet when applied to legal domain, they show limited results. In this paper, we propose to use reinforcement learning to train current deep summarization models to improve their performance on the legal domain. To this end, we adopt proximal policy optimization methods and introduce novel reward functions that encourage the generation of candidate summaries satisfying both lexical and semantic criteria. We apply our method to training different summarization backbones and observe a consistent and significant performance gain across 3 public legal datasets.

Utilizing Visualization-oriented Natural Language Interfaces (V-NLI) as a complementary input modality to direct manipulation for visual analytics can provide an engaging user experience. It enables users to focus on their tasks rather than worrying about operating the interface to visualization tools. In the past two decades, leveraging advanced natural language processing technologies, numerous V-NLI systems have been developed both within academic research and commercial software, especially in recent years. In this article, we conduct a comprehensive review of the existing V-NLIs. In order to classify each paper, we develop categorical dimensions based on a classic information visualization pipeline with the extension of a V-NLI layer. The following seven stages are used: query understanding, data transformation, visual mapping, view transformation, human interaction, context management, and presentation. Finally, we also shed light on several promising directions for future work in the community.

Bidirectional Encoder Representations from Transformers (BERT) represents the latest incarnation of pretrained language models which have recently advanced a wide range of natural language processing tasks. In this paper, we showcase how BERT can be usefully applied in text summarization and propose a general framework for both extractive and abstractive models. We introduce a novel document-level encoder based on BERT which is able to express the semantics of a document and obtain representations for its sentences. Our extractive model is built on top of this encoder by stacking several inter-sentence Transformer layers. For abstractive summarization, we propose a new fine-tuning schedule which adopts different optimizers for the encoder and the decoder as a means of alleviating the mismatch between the two (the former is pretrained while the latter is not). We also demonstrate that a two-staged fine-tuning approach can further boost the quality of the generated summaries. Experiments on three datasets show that our model achieves state-of-the-art results across the board in both extractive and abstractive settings. Our code is available at //github.com/nlpyang/PreSumm

Existing attention mechanisms are trained to attend to individual items in a collection (the memory) with a predefined, fixed granularity, e.g., a word token or an image grid. We propose area attention: a way to attend to areas in the memory, where each area contains a group of items that are structurally adjacent, e.g., spatially for a 2D memory such as images, or temporally for a 1D memory such as natural language sentences. Importantly, the shape and the size of an area are dynamically determined via learning, which enables a model to attend to information with varying granularity. Area attention can easily work with existing model architectures such as multi-head attention for simultaneously attending to multiple areas in the memory. We evaluate area attention on two tasks: neural machine translation (both character and token-level) and image captioning, and improve upon strong (state-of-the-art) baselines in all the cases. These improvements are obtainable with a basic form of area attention that is parameter free.

Automatic summarization of natural language is a current topic in computer science research and industry, studied for decades because of its usefulness across multiple domains. For example, summarization is necessary to create reviews such as this one. Research and applications have achieved some success in extractive summarization (where key sentences are curated), however, abstractive summarization (synthesis and re-stating) is a hard problem and generally unsolved in computer science. This literature review contrasts historical progress up through current state of the art, comparing dimensions such as: extractive vs. abstractive, supervised vs. unsupervised, NLP (Natural Language Processing) vs Knowledge-based, deep learning vs algorithms, structured vs. unstructured sources, and measurement metrics such as Rouge and BLEU. Multiple dimensions are contrasted since current research uses combinations of approaches as seen in the review matrix. Throughout this summary, synthesis and critique is provided. This review concludes with insights for improved abstractive summarization measurement, with surprising implications for detecting understanding and comprehension in general.

Several approaches to image stitching use different constraints to estimate the motion model between image pairs. These constraints can be roughly divided into two categories: geometric constraints and photometric constraints. In this paper, geometric and photometric constraints are combined to improve the alignment quality, which is based on the observation that these two kinds of constraints are complementary. On the one hand, geometric constraints (e.g., point and line correspondences) are usually spatially biased and are insufficient in some extreme scenes, while photometric constraints are always evenly and densely distributed. On the other hand, photometric constraints are sensitive to displacements and are not suitable for images with large parallaxes, while geometric constraints are usually imposed by feature matching and are more robust to handle parallaxes. The proposed method therefore combines them together in an efficient mesh-based image warping framework. It achieves better alignment quality than methods only with geometric constraints, and can handle larger parallax than photometric-constraint-based method. Experimental results on various images illustrate that the proposed method outperforms representative state-of-the-art image stitching methods reported in the literature.

Attention networks in multimodal learning provide an efficient way to utilize given visual information selectively. However, the computational cost to learn attention distributions for every pair of multimodal input channels is prohibitively expensive. To solve this problem, co-attention builds two separate attention distributions for each modality neglecting the interaction between multimodal inputs. In this paper, we propose bilinear attention networks (BAN) that find bilinear attention distributions to utilize given vision-language information seamlessly. BAN considers bilinear interactions among two groups of input channels, while low-rank bilinear pooling extracts the joint representations for each pair of channels. Furthermore, we propose a variant of multimodal residual networks to exploit eight-attention maps of the BAN efficiently. We quantitatively and qualitatively evaluate our model on visual question answering (VQA 2.0) and Flickr30k Entities datasets, showing that BAN significantly outperforms previous methods and achieves new state-of-the-arts on both datasets.

With the ever-growing volume, complexity and dynamicity of online information, recommender system has been an effective key solution to overcome such information overload. In recent years, deep learning's revolutionary advances in speech recognition, image analysis and natural language processing have gained significant attention. Meanwhile, recent studies also demonstrate its effectiveness in coping with information retrieval and recommendation tasks. Applying deep learning techniques into recommender system has been gaining momentum due to its state-of-the-art performances and high-quality recommendations. In contrast to traditional recommendation models, deep learning provides a better understanding of user's demands, item's characteristics and historical interactions between them. This article aims to provide a comprehensive review of recent research efforts on deep learning based recommender systems towards fostering innovations of recommender system research. A taxonomy of deep learning based recommendation models is presented and used to categorize the surveyed articles. Open problems are identified based on the analytics of the reviewed works and potential solutions discussed.

While advances in computing resources have made processing enormous amounts of data possible, human ability to identify patterns in such data has not scaled accordingly. Thus, efficient computational methods for condensing and simplifying data are becoming vital for extracting actionable insights. In particular, while data summarization techniques have been studied extensively, only recently has summarizing interconnected data, or graphs, become popular. This survey is a structured, comprehensive overview of the state-of-the-art methods for summarizing graph data. We first broach the motivation behind and the challenges of graph summarization. We then categorize summarization approaches by the type of graphs taken as input and further organize each category by core methodology. Finally, we discuss applications of summarization on real-world graphs and conclude by describing some open problems in the field.

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