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Differential equation models are crucial to scientific processes. The values of model parameters are important for analyzing the behaviour of solutions. A parameter is called globally identifiable if its value can be uniquely determined from the input and output functions. To determine if a parameter estimation problem is well-posed for a given model, one must check if the model parameters are globally identifiable. This problem has been intensively studied for ordinary differential equation models, with theory and several efficient algorithms and software packages developed. A comprehensive theory of algebraic identifiability for PDEs has hitherto not been developed due to the complexity of initial and boundary conditions. Here, we provide theory and algorithms, based on differential algebra, for testing identifiability of polynomial PDE models. We showcase this approach on PDE models arising in the sciences.

Nonlinear conservation laws such as the system of ideal magnetohydrodynamics (MHD) equations may develop singularities over time. In these situations, viscous regularization is a common approach to regain regularity of the solution. In this paper, we present a new viscous flux to regularize the MHD equations which holds many attractive properties. In particular, we prove that the proposed viscous flux preserves positivity of density and internal energy, satisfies the minimum entropy principle, is consistent with all generalized entropies, and is Galilean and rotationally invariant. We also provide a variation of the viscous flux that conserves angular momentum. To make the analysis more useful for numerical schemes, the divergence of the magnetic field is not assumed to be zero. Using continuous finite elements, we show several numerical experiments including contact waves and magnetic reconnection.

Input-output conformance simulation (iocos) has been proposed by Gregorio-Rodr\'iguez, Llana and Mart\'inez-Torres as a simulation-based behavioural preorder underlying model-based testing. This relation is inspired by Tretmans' classic ioco relation, but has better worst-case complexity than ioco and supports stepwise refinement. The goal of this paper is to develop the theory of iocos by studying logical characterisations of this relation, rule formats for it and its compositionality. More specifically, this article presents characterisations of iocos in terms of modal logics and compares them with an existing logical characterisation for ioco proposed by Beohar and Mousavi. It also offers a characteristic-formula construction for iocos over finite processes in an extension of the proposed modal logics with greatest fixed points. A precongruence rule format for iocos and a rule format ensuring that operations take quiescence properly into account are also given. Both rule formats are based on the GSOS format by Bloom, Istrail and Meyer. The general modal decomposition methodology of Fokkink and van Glabbeek is used to show how to check the satisfaction of properties expressed in the logic for iocos in a compositional way for operations specified by rules in the precongruence rule format for iocos .

We study the approximation by a Voronoi finite-volume scheme of the Gross-Pitaevskii equation with time-dependent potential in two and three dimensions. We perform an explicit splitting scheme for the time integration alongside a two-point flux approximation scheme in space. We rigorously analyze the error bounds relying on discrete uniform Sobolev inequalities. We also prove the convergence of the pseudo-vorticity of the wave function. We finally perform some numerical simulations to illustrate our theoretical results.

We study the optimal rate of convergence in periodic homogenization of the viscous Hamilton-Jacobi equation $u^\varepsilon_t + H(\frac{x}{\varepsilon},Du^\varepsilon) = \varepsilon \Delta u^\varepsilon$ in $\mathbb R^n\times (0,\infty)$ subject to a given initial datum. We prove that $\|u^\varepsilon-u\|_{L^\infty(\mathbb R^n \times [0,T])} \leq C(1+T) \sqrt{\varepsilon}$ for any given $T>0$. Moreover, we show that the $O(\sqrt{\varepsilon})$ rate is optimal in general, both theoretically and through numerical experiments. Finally, we propose a numerical scheme for the approximation of the effective Hamiltonian based on a finite element approximation of approximate corrector problems.

We explore a linear inhomogeneous elasticity equation with random Lam\'e parameters. The latter are parameterized by a countably infinite number of terms in separated expansions. The main aim of this work is to estimate expected values (considered as an infinite dimensional integral on the parametric space corresponding to the random coefficients) of linear functionals acting on the solution of the elasticity equation. To achieve this, the expansions of the random parameters are truncated, a high-order quasi-Monte Carlo (QMC) is combined with a sparse grid approach to approximate the high dimensional integral, and a Galerkin finite element method (FEM) is introduced to approximate the solution of the elasticity equation over the physical domain. The error estimates from (1) truncating the infinite expansion, (2) the Galerkin FEM, and (3) the QMC sparse grid quadrature rule are all studied. For this purpose, we show certain required regularity properties of the continuous solution with respect to both the parametric and physical variables. To achieve our theoretical regularity and convergence results, some reasonable assumptions on the expansions of the random coefficients are imposed. Finally, some numerical results are delivered.

In [3] it was shown that four seemingly different algorithms for computing low-rank approximate solutions $X_j$ to the solution $X$ of large-scale continuous-time algebraic Riccati equations (CAREs) $0 = \mathcal{R}(X) := A^HX+XA+C^HC-XBB^HX $ generate the same sequence $X_j$ when used with the same parameters. The Hermitian low-rank approximations $X_j$ are of the form $X_j = Z_jY_jZ_j^H,$ where $Z_j$ is a matrix with only few columns and $Y_j$ is a small square Hermitian matrix. Each $X_j$ generates a low-rank Riccati residual $\mathcal{R}(X_j)$ such that the norm of the residual can be evaluated easily allowing for an efficient termination criterion. Here a new family of methods to generate such low-rank approximate solutions $X_j$ of CAREs is proposed. Each member of this family of algorithms proposed here generates the same sequence of $X_j$ as the four previously known algorithms. The approach is based on a block rational Arnoldi decomposition and an associated block rational Krylov subspace spanned by $A^H$ and $C^H.$ Two specific versions of the general algorithm will be considered; one will turn out to be a rediscovery of the RADI algorithm, the other one allows for a slightly more efficient implementation compared to the RADI algorithm (in case the Sherman-Morrision-Woodbury formula and a direct solver is used to solve the linear systems that occur). Moreover, our approach allows for adding more than one shift at a time.

The joint bidiagonalization (JBD) process iteratively reduces a matrix pair $\{A,L\}$ to two bidiagonal forms simultaneously, which can be used for computing a partial generalized singular value decomposition (GSVD) of $\{A,L\}$. The process has a nested inner-outer iteration structure, where the inner iteration usually can not be computed exactly. In this paper, we study the inaccurately computed inner iterations of JBD by first investigating influence of computational error of the inner iteration on the outer iteration, and then proposing a reorthogonalized JBD (rJBD) process to keep orthogonality of a part of Lanczos vectors. An error analysis of the rJBD is carried out to build up connections with Lanczos bidiagonalizations. The results are then used to investigate convergence and accuracy of the rJBD based GSVD computation. It is shown that the accuracy of computed GSVD components depend on the computing accuracy of inner iterations and condition number of $(A^T,L^T)^T$ while the convergence rate is not affected very much. For practical JBD based GSVD computations, our results can provide a guideline for choosing a proper computing accuracy of inner iterations in order to obtain approximate GSVD components with a desired accuracy. Numerical experiments are made to confirm our theoretical results.

An efficient approximate version of implicit Taylor methods for initial-value problems of systems of ordinary differential equations (ODEs) is introduced. The approach, based on an approximate formulation of Taylor methods, produces a method that requires less evaluations of the function that defines the ODE and its derivatives than the usual version. On the other hand, an efficient numerical solution of the equation that arises from the discretization by means of Newton's method is introduced for an implicit scheme of any order. Numerical experiments illustrate that the resulting algorithm is simpler to implement and has better performance than its exact counterpart.

Partial differential equations (PDEs) have become an essential tool for modeling complex physical systems. Such equations are typically solved numerically via mesh-based methods, such as finite element methods, with solutions over the spatial domain. However, obtaining these solutions are often prohibitively costly, limiting the feasibility of exploring parameters in PDEs. In this paper, we propose an efficient emulator that simultaneously predicts the solutions over the spatial domain, with theoretical justification of its uncertainty quantification. The novelty of the proposed method lies in the incorporation of the mesh node coordinates into the statistical model. In particular, the proposed method segments the mesh nodes into multiple clusters via a Dirichlet process prior and fits Gaussian process models with the same hyperparameters in each of them. Most importantly, by revealing the underlying clustering structures, the proposed method can provide valuable insights into qualitative features of the resulting dynamics that can be used to guide further investigations. Real examples are demonstrated to show that our proposed method has smaller prediction errors than its main competitors, with competitive computation time, and identifies interesting clusters of mesh nodes that possess physical significance, such as satisfying boundary conditions. An R package for the proposed methodology is provided in an open repository.