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Data collection and research methodology represents a critical part of the research pipeline. On the one hand, it is important that we collect data in a way that maximises the validity of what we are measuring, which may involve the use of long scales with many items. On the other hand, collecting a large number of items across multiple scales results in participant fatigue, and expensive and time consuming data collection. It is therefore important that we use the available resources optimally. In this work, we consider how a consideration for theory and the associated causal/structural model can help us to streamline data collection procedures by not wasting time collecting data for variables which are not causally critical for subsequent analysis. This not only saves time and enables us to redirect resources to attend to other variables which are more important, but also increases research transparency and the reliability of theory testing. In order to achieve this streamlined data collection, we leverage structural models, and Markov conditional independency structures implicit in these models to identify the substructures which are critical for answering a particular research question. In this work, we review the relevant concepts and present a number of didactic examples with the hope that psychologists can use these techniques to streamline their data collection process without invalidating the subsequent analysis. We provide a number of simulation results to demonstrate the limited analytical impact of this streamlining.

Reinforcement learning (RL) has shown promise as a tool for engineering safe, ethical, or legal behaviour in autonomous agents. Its use typically relies on assigning punishments to state-action pairs that constitute unsafe or unethical choices. Despite this assignment being a crucial step in this approach, however, there has been limited discussion on generalizing the process of selecting punishments and deciding where to apply them. In this paper, we adopt an approach that leverages an existing framework -- the normative supervisor of (Neufeld et al., 2021) -- during training. This normative supervisor is used to dynamically translate states and the applicable normative system into defeasible deontic logic theories, feed these theories to a theorem prover, and use the conclusions derived to decide whether or not to assign a punishment to the agent. We use multi-objective RL (MORL) to balance the ethical objective of avoiding violations with a non-ethical objective; we will demonstrate that our approach works for a multiplicity of MORL techniques, and show that it is effective regardless of the magnitude of the punishment we assign.

Cargo loss/damage is a very common problem faced by almost any business with a supply chain arm, leading to major problems like revenue loss and reputation tarnishing. This problem can be solved by employing an asset and impact tracking solution. This would be more practical and effective for high-cost cargo in comparison to low-cost cargo due to the high costs associated with the sensors and overall solution. In this study, we propose a low-cost solution architecture that is scalable, user-friendly, easy to adopt and is viable for a large range of cargo and logistics systems. Taking inspiration from a real-life use case we solved for a client, we also provide insights into the architecture as well as the design decisions that make this a reality.

The problem of Byzantine consensus has been key to designing secure distributed systems. However, it is particularly difficult, mainly due to the presence of Byzantine processes that act arbitrarily and the unknown message delays in general networks. Although it is well known that both safety and liveness are at risk as soon as $n/3$ Byzantine processes fail, very few works attempted to characterize precisely the faults that produce safety violations from the faults that produce termination violations. In this paper, we present a new lower bound on the solvability of the consensus problem by distinguishing deceitful faults violating safety and benign faults violating termination from the more general Byzantine faults, in what we call the Byzantine-deceitful-benign fault model. We show that one cannot solve consensus if $n\leq 3t+d+2q$ with $t$ Byzantine processes, $d$ deceitful processes, and $q$ benign processes. In addition, we show that this bound is tight by presenting the Basilic class of consensus protocols that solve consensus when $n > 3t+d+2q$. These protocols differ in the number of processes from which they wait to receive messages before progressing. Each of these protocols is thus better suited for some applications depending on the predominance of benign or deceitful faults. Finally, we study the fault tolerance of the Basilic class of consensus protocols in the context of blockchains that need to solve the weaker problem of eventual consensus. We demonstrate that Basilic solves this problem with only $n > 2t+d+q$, hence demonstrating how it can strengthen blockchain security.

The latest biological findings discover that the motionless 'lock-and-key' theory is no longer applicable and the flexibility of both the receptor and ligand plays a significant role in helping understand the principles of the binding affinity prediction. Based on this mechanism, molecular dynamics (MD) simulations have been invented as a useful tool to investigate the dynamical properties of this molecular system. However, the computational expenditure prohibits the growth of reported protein trajectories. To address this insufficiency, we present a novel spatial-temporal pre-training protocol, PretrainMD, to grant the protein encoder the capacity to capture the time-dependent geometric mobility along MD trajectories. Specifically, we introduce two sorts of self-supervised learning tasks: an atom-level denoising generative task and a protein-level snapshot ordering task. We validate the effectiveness of PretrainMD through the PDBbind dataset for both linear-probing and fine-tuning. Extensive experiments show that our PretrainMD exceeds most state-of-the-art methods and achieves comparable performance. More importantly, through visualization we discover that the learned representations by pre-training on MD trajectories without any label from the downstream task follow similar patterns of the magnitude of binding affinities. This strongly aligns with the fact that the motion of the interactions of protein and ligand maintains the key information of their binding. Our work provides a promising perspective of self-supervised pre-training for protein representations with very fine temporal resolutions and hopes to shed light on the further usage of MD simulations for the biomedical deep learning community.

Embodied AI is a recent research area that aims at creating intelligent agents that can move and operate inside an environment. Existing approaches in this field demand the agents to act in completely new and unexplored scenes. However, this setting is far from realistic use cases that instead require executing multiple tasks in the same environment. Even if the environment changes over time, the agent could still count on its global knowledge about the scene while trying to adapt its internal representation to the current state of the environment. To make a step towards this setting, we propose Spot the Difference: a novel task for Embodied AI where the agent has access to an outdated map of the environment and needs to recover the correct layout in a fixed time budget. To this end, we collect a new dataset of occupancy maps starting from existing datasets of 3D spaces and generating a number of possible layouts for a single environment. This dataset can be employed in the popular Habitat simulator and is fully compliant with existing methods that employ reconstructed occupancy maps during navigation. Furthermore, we propose an exploration policy that can take advantage of previous knowledge of the environment and identify changes in the scene faster and more effectively than existing agents. Experimental results show that the proposed architecture outperforms existing state-of-the-art models for exploration on this new setting.

After the success of the Bitcoin blockchain, came several cryptocurrencies and blockchain solutions in the last decade. Nonetheless, Blockchain-based systems still suffer from low transaction rates and high transaction processing latencies, which hinder blockchains' scalability. An entire class of solutions, called Layer-1 scalability solutions, have attempted to incrementally improve such limitations by adding/modifying fundamental blockchain attributes. Recently, a completely different class of works, called Layer-2 protocols, have emerged to tackle the blockchain scalability issues using unconventional approaches. Layer-2 protocols improve transaction processing rates, periods, and fees by minimizing the use of underlying slow and costly blockchains. In fact, the main chain acts just as an instrument for trust establishment and dispute resolution among Layer-2 participants, where only a few transactions are dispatched to the main chain. Thus, Layer-2 blockchain protocols have the potential to transform the domain. However, rapid and discrete developments have resulted in diverse branches of Layer-2 protocols. In this work, we systematically create a broad taxonomy of such protocols and implementations. We discuss each Layer-2 protocol class in detail and also elucidate their respective approaches, salient features, requirements, etc. Moreover, we outline the issues related to these protocols along with a comparative discussion. Our thorough study will help further systematize the knowledge dispersed in the domain and help the readers to better understand the field of Layer-2 protocols.

The dynamic response of the legged robot locomotion is non-Lipschitz and can be stochastic due to environmental uncertainties. To test, validate, and characterize the safety performance of legged robots, existing solutions on observed and inferred risk can be incomplete and sampling inefficient. Some formal verification methods suffer from the model precision and other surrogate assumptions. In this paper, we propose a scenario sampling based testing framework that characterizes the overall safety performance of a legged robot by specifying (i) where (in terms of a set of states) the robot is potentially safe, and (ii) how safe the robot is within the specified set. The framework can also help certify the commercial deployment of the legged robot in real-world environment along with human and compare safety performance among legged robots with different mechanical structures and dynamic properties. The proposed framework is further deployed to evaluate a group of state-of-the-art legged robot locomotion controllers from various model-based, deep neural network involved, and reinforcement learning based methods in the literature. Among a series of intended work domains of the studied legged robots (e.g. tracking speed on sloped surface, with abrupt changes on demanded velocity, and against adversarial push-over disturbances), we show that the method can adequately capture the overall safety characterization and the subtle performance insights. Many of the observed safety outcomes, to the best of our knowledge, have never been reported by the existing work in the legged robot literature.

The stochastic gradient Langevin Dynamics is one of the most fundamental algorithms to solve sampling problems and non-convex optimization appearing in several machine learning applications. Especially, its variance reduced versions have nowadays gained particular attention. In this paper, we study two variants of this kind, namely, the Stochastic Variance Reduced Gradient Langevin Dynamics and the Stochastic Recursive Gradient Langevin Dynamics. We prove their convergence to the objective distribution in terms of KL-divergence under the sole assumptions of smoothness and Log-Sobolev inequality which are weaker conditions than those used in prior works for these algorithms. With the batch size and the inner loop length set to $\sqrt{n}$, the gradient complexity to achieve an $\epsilon$-precision is $\tilde{O}((n+dn^{1/2}\epsilon^{-1})\gamma^2 L^2\alpha^{-2})$, which is an improvement from any previous analyses. We also show some essential applications of our result to non-convex optimization.

Underlying computational model has an important role in any computation. The state and transition (such as in automata) and rule and value (such as in Lisp and logic programming) are two comparable and counterpart computational models. Both of deductive and model checking verification techniques are relying on a notion of state and as a result, their underlying computational models are state dependent. Some verification problems (such as compliance checking by which an under compliance system is verified against some regulations and rules) have not a strong notion of state nor transition. Behalf of it, these systems have a strong notion of value symbols and declarative rules defined on them. SARV (Stateless And Rule-Based Verification) is a verification framework that designed to simplify the overall process of verification for stateless and rule-based verification problems (e.g. compliance checking). In this paper, a formal logic-based framework for creating intelligent compliance checking systems is presented. We define and introduce this framework, report a case study and present results of an experiment on it. The case study is about protocol compliance checking for smart cities. Using this solution, a Rescue Scenario use case and its compliance checking are sketched and modeled. An automation engine for and a compliance solution with SARV are introduced. Based on 300 data experiments, the SARV-based compliance solution outperforms famous machine learning methods on a 3125-records software quality dataset.