Voxel-based multiple testing is widely used in neuroimaging data analysis. Traditional false discovery rate (FDR) control methods often ignore the spatial dependence among the voxel-based tests and thus suffer from substantial loss of testing power. While recent spatial FDR control methods have emerged, their validity and optimality remain questionable when handling the complex spatial dependencies of the brain. Concurrently, deep learning methods have revolutionized image segmentation, a task closely related to voxel-based multiple testing. In this paper, we propose DeepFDR, a novel spatial FDR control method that leverages unsupervised deep learning-based image segmentation to address the voxel-based multiple testing problem. Numerical studies, including comprehensive simulations and Alzheimer's disease FDG-PET image analysis, demonstrate DeepFDR's superiority over existing methods. DeepFDR not only excels in FDR control and effectively diminishes the false nondiscovery rate, but also boasts exceptional computational efficiency highly suited for tackling large-scale neuroimaging data.
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Differentiable physics simulation provides an avenue for tackling previously intractable challenges through gradient-based optimization, thereby greatly improving the efficiency of solving robotics-related problems. To apply differentiable simulation in diverse robotic manipulation scenarios, a key challenge is to integrate various materials in a unified framework. We present SoftMAC, a differentiable simulation framework coupling soft bodies with articulated rigid bodies and clothes. SoftMAC simulates soft bodies with the continuum-mechanics-based Material Point Method (MPM). We provide a forecast-based contact model for MPM, which greatly reduces artifacts like penetration and unnatural rebound. To couple MPM particles with deformable and non-volumetric clothes meshes, we also propose a penetration tracing algorithm that reconstructs the signed distance field in local area. Based on simulators for each modality and the contact model, we develop a differentiable coupling mechanism to simulate the interactions between soft bodies and the other two types of materials. Comprehensive experiments are conducted to validate the effectiveness and accuracy of the proposed differentiable pipeline in downstream robotic manipulation applications. Supplementary materials and videos are available on our project website at //sites.google.com/view/softmac.
Detecting anomalies in real-world multivariate time series data is challenging due to complex temporal dependencies and inter-variable correlations. Recently, reconstruction-based deep models have been widely used to solve the problem. However, these methods still suffer from an over-generalization issue and fail to deliver consistently high performance. To address this issue, we propose the MEMTO, a memory-guided Transformer using a reconstruction-based approach. It is designed to incorporate a novel memory module that can learn the degree to which each memory item should be updated in response to the input data. To stabilize the training procedure, we use a two-phase training paradigm which involves using K-means clustering for initializing memory items. Additionally, we introduce a bi-dimensional deviation-based detection criterion that calculates anomaly scores considering both input space and latent space. We evaluate our proposed method on five real-world datasets from diverse domains, and it achieves an average anomaly detection F1-score of 95.74%, significantly outperforming the previous state-of-the-art methods. We also conduct extensive experiments to empirically validate the effectiveness of our proposed model's key components.
Image super-resolution aims to synthesize high-resolution image from a low-resolution image. It is an active area to overcome the resolution limitations in several applications like low-resolution object-recognition, medical image enhancement, etc. The generative adversarial network (GAN) based methods have been the state-of-the-art for image super-resolution by utilizing the convolutional neural networks (CNNs) based generator and discriminator networks. However, the CNNs are not able to exploit the global information very effectively in contrast to the transformers, which are the recent breakthrough in deep learning by exploiting the self-attention mechanism. Motivated from the success of transformers in language and vision applications, we propose a SRTransGAN for image super-resolution using transformer based GAN. Specifically, we propose a novel transformer-based encoder-decoder network as a generator to generate 2x images and 4x images. We design the discriminator network using vision transformer which uses the image as sequence of patches and hence useful for binary classification between synthesized and real high-resolution images. The proposed SRTransGAN outperforms the existing methods by 4.38 % on an average of PSNR and SSIM scores. We also analyze the saliency map to understand the learning ability of the proposed method.
The autonomous driving community has shown significant interest in 3D occupancy prediction, driven by its exceptional geometric perception and general object recognition capabilities. To achieve this, current works try to construct a Tri-Perspective View (TPV) or Occupancy (OCC) representation extending from the Bird-Eye-View perception. However, compressed views like TPV representation lose 3D geometry information while raw and sparse OCC representation requires heavy but reducant computational costs. To address the above limitations, we propose Compact Occupancy TRansformer (COTR), with a geometry-aware occupancy encoder and a semantic-aware group decoder to reconstruct a compact 3D OCC representation. The occupancy encoder first generates a compact geometrical OCC feature through efficient explicit-implicit view transformation. Then, the occupancy decoder further enhances the semantic discriminability of the compact OCC representation by a coarse-to-fine semantic grouping strategy. Empirical experiments show that there are evident performance gains across multiple baselines, e.g., COTR outperforms baselines with a relative improvement of 8%-15%, demonstrating the superiority of our method.
Understanding electric vehicle (EV) charging on the distribution network is key to effective EV charging management and aiding decarbonization across the energy and transport sectors. Advanced metering infrastructure has allowed distribution system operators and utility companies to collect high-resolution load data from their networks. These advancements enable the non-intrusive load monitoring (NILM) technique to detect EV charging using load measurement data. While existing studies primarily focused on NILM for EV charging detection in individual households, there is a research gap on EV charging detection at the feeder level, presenting unique challenges due to the combined load measurement from multiple households. In this paper, we develop a novel and effective approach for EV detection at the feeder level, involving sliding-window feature extraction and classical machine learning techniques, specifically models like XGBoost and Random Forest. Our developed method offers a lightweight and efficient solution, capable of quick training. Moreover, our developed method is versatile, supporting both offline and online EV charging detection. Our experimental results demonstrate high-accuracy EV charging detection at the feeder level, achieving an F-Score of 98.88% in offline detection and 93.01% in online detection.
Describing the relationship between the variables in a study domain and modelling the data generating mechanism is a fundamental problem in many empirical sciences. Probabilistic graphical models are one common approach to tackle the problem. Learning the graphical structure for such models is computationally challenging and a fervent area of current research with a plethora of algorithms being developed. To facilitate the benchmarking of different methods, we present a novel Snakemake workflow, called Benchpress for producing scalable, reproducible, and platform-independent benchmarks of structure learning algorithms for probabilistic graphical models. Benchpress is interfaced via a simple JSON-file, which makes it accessible for all users, while the code is designed in a fully modular fashion to enable researchers to contribute additional methodologies. Benchpress currently provides an interface to a large number of state-of-the-art algorithms from libraries such as BDgraph, BiDAG, bnlearn, causal-learn, gCastle, GOBNILP, pcalg, r.blip, scikit-learn, TETRAD, and trilearn as well as a variety of methods for data generating models and performance evaluation. Alongside user-defined models and randomly generated datasets, the workflow also includes a number of standard datasets and graphical models from the literature, which may be included in a benchmarking study. We demonstrate the applicability of this workflow for learning Bayesian networks in five typical data scenarios. The source code and documentation is publicly available from //benchpressdocs.readthedocs.io.
Transformer-based models for anomaly detection in multivariate time series can benefit from the self-attention mechanism due to its advantage in modeling long-term dependencies. However, Transformer-based anomaly detection models have problems such as a large amount of data being required for training, standard positional encoding is not suitable for multivariate time series data, and the interdependence between time series is not considered. To address these limitations, we propose a novel anomaly detection method, named EdgeConvFormer, which integrates Time2vec embedding, stacked dynamic graph CNN, and Transformer to extract global and local spatial-time information. This design of EdgeConvFormer empowers it with decomposition capacities for complex time series, progressive spatiotemporal correlation discovery between time series, and representation aggregation of multi-scale features. Experiments demonstrate that EdgeConvFormer can learn the spatial-temporal correlations from multivariate time series data and achieve better anomaly detection performance than the state-of-the-art approaches on many real-world datasets of different scales.
Intelligent driving systems aim to achieve a zero-collision mobility experience, requiring interdisciplinary efforts to enhance safety performance. This work focuses on risk identification, the process of identifying and analyzing risks stemming from dynamic traffic participants and unexpected events. While significant advances have been made in the community, the current evaluation of different risk identification algorithms uses independent datasets, leading to difficulty in direct comparison and hindering collective progress toward safety performance enhancement. To address this limitation, we introduce \textbf{RiskBench}, a large-scale scenario-based benchmark for risk identification. We design a scenario taxonomy and augmentation pipeline to enable a systematic collection of ground truth risks under diverse scenarios. We assess the ability of ten algorithms to (1) detect and locate risks, (2) anticipate risks, and (3) facilitate decision-making. We conduct extensive experiments and summarize future research on risk identification. Our aim is to encourage collaborative endeavors in achieving a society with zero collisions. We have made our dataset and benchmark toolkit publicly on the project page: //hcis-lab.github.io/RiskBench/
TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classication
Multiple instance learning (MIL) is a powerful tool to solve the weakly supervised classification in whole slide image (WSI) based pathology diagnosis. However, the current MIL methods are usually based on independent and identical distribution hypothesis, thus neglect the correlation among different instances. To address this problem, we proposed a new framework, called correlated MIL, and provided a proof for convergence. Based on this framework, we devised a Transformer based MIL (TransMIL), which explored both morphological and spatial information. The proposed TransMIL can effectively deal with unbalanced/balanced and binary/multiple classification with great visualization and interpretability. We conducted various experiments for three different computational pathology problems and achieved better performance and faster convergence compared with state-of-the-art methods. The test AUC for the binary tumor classification can be up to 93.09% over CAMELYON16 dataset. And the AUC over the cancer subtypes classification can be up to 96.03% and 98.82% over TCGA-NSCLC dataset and TCGA-RCC dataset, respectively.
Recently, ensemble has been applied to deep metric learning to yield state-of-the-art results. Deep metric learning aims to learn deep neural networks for feature embeddings, distances of which satisfy given constraint. In deep metric learning, ensemble takes average of distances learned by multiple learners. As one important aspect of ensemble, the learners should be diverse in their feature embeddings. To this end, we propose an attention-based ensemble, which uses multiple attention masks, so that each learner can attend to different parts of the object. We also propose a divergence loss, which encourages diversity among the learners. The proposed method is applied to the standard benchmarks of deep metric learning and experimental results show that it outperforms the state-of-the-art methods by a significant margin on image retrieval tasks.
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