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We study self-regulating processes modeling biological transportation networks as presented in \cite{portaro2023}. In particular, we focus on the 1D setting for Dirichlet and Neumann boundary conditions. We prove an existence and uniqueness result under the assumption of positivity of the diffusivity $D$. We explore systematically various scenarios and gain insights into the behavior of $D$ and its impact on the studied system. This involves analyzing the system with a signed measure distribution of sources and sinks. Finally, we perform several numerical tests in which the solution $D$ touches zero, confirming the previous hints of local existence in particular cases.

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Certifying the positivity of trigonometric polynomials is of first importance for design problems in discrete-time signal processing. It is well known from the Riesz-Fej\'ez spectral factorization theorem that any trigonometric univariate polynomial positive on the unit circle can be decomposed as a Hermitian square with complex coefficients. Here we focus on the case of polynomials with Gaussian integer coefficients, i.e., with real and imaginary parts being integers. We design, analyze and compare, theoretically and practically,three hybrid numeric-symbolic algorithms computing weighted sums of Hermitian squares decompositions for trigonometric univariate polynomials positive on the unit circle with Gaussian coefficients. The numerical steps the first and second algorithm rely on are complex root isolation and semidefinite programming, respectively. An exact sum of Hermitian squares decomposition is obtained thanks to compensation techniques. The third algorithm, also based on complex semidefinite programming, is an adaptation of the rounding and projection algorithm by Peyrl and Parrilo. For all three algorithms, we prove bit complexity and output size estimates that are polynomial in the degree of the input and linear in the maximum bitsize of its coefficients. We compare their performance on randomly chosen benchmarks, and further design a certified finite impulse filter.

Recently, advancements in deep learning-based superpixel segmentation methods have brought about improvements in both the efficiency and the performance of segmentation. However, a significant challenge remains in generating superpixels that strictly adhere to object boundaries while conveying rich visual significance, especially when cross-surface color correlations may interfere with objects. Drawing inspiration from neural structure and visual mechanisms, we propose a biological network architecture comprising an Enhanced Screening Module (ESM) and a novel Boundary-Aware Label (BAL) for superpixel segmentation. The ESM enhances semantic information by simulating the interactive projection mechanisms of the visual cortex. Additionally, the BAL emulates the spatial frequency characteristics of visual cortical cells to facilitate the generation of superpixels with strong boundary adherence. We demonstrate the effectiveness of our approach through evaluations on both the BSDS500 dataset and the NYUv2 dataset.

Recently, Sato et al. proposed an public verifiable blind quantum computation (BQC) protocol by inserting a third-party arbiter. However, it is not true public verifiable in a sense, because the arbiter is determined in advance and participates in the whole process. In this paper, a public verifiable protocol for measurement-only BQC is proposed. The fidelity between arbitrary states and the graph states of 2-colorable graphs is estimated by measuring the entanglement witnesses of the graph states,so as to verify the correctness of the prepared graph states. Compared with the previous protocol, our protocol is public verifiable in the true sense by allowing other random clients to execute the public verification. It also has greater advantages in the efficiency, where the number of local measurements is O(n^3*log {n}) and graph states' copies is O(n^2*log{n}).

A finite element based computational scheme is developed and employed to assess a duality based variational approach to the solution of the linear heat and transport PDE in one space dimension and time, and the nonlinear system of ODEs of Euler for the rotation of a rigid body about a fixed point. The formulation turns initial-(boundary) value problems into degenerate elliptic boundary value problems in (space)-time domains representing the Euler-Lagrange equations of suitably designed dual functionals in each of the above problems. We demonstrate reasonable success in approximating solutions of this range of parabolic, hyperbolic, and ODE primal problems, which includes energy dissipation as well as conservation, by a unified dual strategy lending itself to a variational formulation. The scheme naturally associates a family of dual solutions to a unique primal solution; such `gauge invariance' is demonstrated in our computed solutions of the heat and transport equations, including the case of a transient dual solution corresponding to a steady primal solution of the heat equation. Primal evolution problems with causality are shown to be correctly approximated by non-causal dual problems.

Semitopologies model consensus in distributed system by equating the notion of a quorum -- a set of participants sufficient to make local progress -- with that of an open set. This yields a topology-like theory of consensus, but semitopologies generalise topologies, since the intersection of two quorums need not necessarily be a quorum. The semitopological model of consensus is naturally heterogeneous and local, just like topologies can be heterogenous and local, and for the same reasons: points may have different quorums and there is no restriction that open sets / quorums be uniformly generated (e.g. open sets can be something other than two-thirds majorities of the points in the space). Semiframes are an algebraic abstraction of semitopologies. They are to semitopologies as frames are to topologies. We give a notion of semifilter, which plays a role analogous to filters, and show how to build a semiframe out of the open sets of a semitopology, and a semitopology out of the semifilters of a semiframe. We define suitable notions of category and morphism and prove a categorical duality between (sober) semiframes and (spatial) semitopologies, and investigate well-behavedness properties on semitopologies and semiframes across the duality. Surprisingly, the structure of semiframes is not what one might initially expect just from looking at semitopologies, and the canonical structure required for the duality result -- a compatibility relation *, generalising sets intersection -- is also canonical for expressing well-behavedness properties. Overall, we deliver a new categorical, algebraic, abstract framework within which to study consensus on distributed systems, and which is also simply interesting to consider as a mathematical theory in its own right.

Network motifs are recurrent, small-scale patterns of interactions observed frequently in a system. They shed light on the interplay between the topology and the dynamics of complex networks across various domains. In this work, we focus on the problem of counting occurrences of small sub-hypergraph patterns in very large hypergraphs, where higher-order interactions connect arbitrary numbers of system units. We show how directly exploiting higher-order structures speeds up the counting process compared to traditional data mining techniques for exact motif discovery. Moreover, with hyperedge sampling, performance is further improved at the cost of small errors in the estimation of motif frequency. We evaluate our method on several real-world datasets describing face-to-face interactions, co-authorship and human communication. We show that our approximated algorithm allows us to extract higher-order motifs faster and on a larger scale, beyond the computational limits of an exact approach.

This paper presents a physics and data co-driven surrogate modeling method for efficient rare event simulation of civil and mechanical systems with high-dimensional input uncertainties. The method fuses interpretable low-fidelity physical models with data-driven error corrections. The hypothesis is that a well-designed and well-trained simplified physical model can preserve salient features of the original model, while data-fitting techniques can fill the remaining gaps between the surrogate and original model predictions. The coupled physics-data-driven surrogate model is adaptively trained using active learning, aiming to achieve a high correlation and small bias between the surrogate and original model responses in the critical parametric region of a rare event. A final importance sampling step is introduced to correct the surrogate model-based probability estimations. Static and dynamic problems with input uncertainties modeled by random field and stochastic process are studied to demonstrate the proposed method.

We study pointwise estimation and uncertainty quantification for a sparse variational Gaussian process method with eigenvector inducing variables. For a rescaled Brownian motion prior, we derive theoretical guarantees and limitations for the frequentist size and coverage of pointwise credible sets. For sufficiently many inducing variables, we precisely characterize the asymptotic frequentist coverage, deducing when credible sets from this variational method are conservative and when overconfident/misleading. We numerically illustrate the applicability of our results and discuss connections with other common Gaussian process priors.

We introduce a flexible method to simultaneously infer both the drift and volatility functions of a discretely observed scalar diffusion. We introduce spline bases to represent these functions and develop a Markov chain Monte Carlo algorithm to infer, a posteriori, the coefficients of these functions in the spline basis. A key innovation is that we use spline bases to model transformed versions of the drift and volatility functions rather than the functions themselves. The output of the algorithm is a posterior sample of plausible drift and volatility functions that are not constrained to any particular parametric family. The flexibility of this approach provides practitioners a powerful investigative tool, allowing them to posit a variety of parametric models to better capture the underlying dynamics of their processes of interest. We illustrate the versatility of our method by applying it to challenging datasets from finance, paleoclimatology, and astrophysics. In view of the parametric diffusion models widely employed in the literature for those examples, some of our results are surprising since they call into question some aspects of these models.

Effective application of mathematical models to interpret biological data and make accurate predictions often requires that model parameters are identifiable. Approaches to assess the so-called structural identifiability of models are well-established for ordinary differential equation models, yet there are no commonly adopted approaches that can be applied to assess the structural identifiability of the partial differential equation (PDE) models that are requisite to capture spatial features inherent to many phenomena. The differential algebra approach to structural identifiability has recently been demonstrated to be applicable to several specific PDE models. In this brief article, we present general methodology for performing structural identifiability analysis on partially observed linear reaction-advection-diffusion (RAD) PDE models. We show that the differential algebra approach can always, in theory, be applied to linear RAD models. Moreover, despite the perceived complexity introduced by the addition of advection and diffusion terms, identifiability of spatial analogues of non-spatial models cannot decrease structural identifiability. Finally, we show that our approach can also be applied to a class of non-linear PDE models that are linear in the unobserved variables, and conclude by discussing future possibilities and computational cost of performing structural identifiability analysis on more general PDE models in mathematical biology.

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