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The Transformer architecture has gained growing attention in graph representation learning recently, as it naturally overcomes several limitations of graph neural networks (GNNs) by avoiding their strict structural inductive biases and instead only encoding the graph structure via positional encoding. Here, we show that the node representations generated by the Transformer with positional encoding do not necessarily capture structural similarity between them. To address this issue, we propose the Structure-Aware Transformer, a class of simple and flexible graph Transformers built upon a new self-attention mechanism. This new self-attention incorporates structural information into the original self-attention by extracting a subgraph representation rooted at each node before computing the attention. We propose several methods for automatically generating the subgraph representation and show theoretically that the resulting representations are at least as expressive as the subgraph representations. Empirically, our method achieves state-of-the-art performance on five graph prediction benchmarks. Our structure-aware framework can leverage any existing GNN to extract the subgraph representation, and we show that it systematically improves performance relative to the base GNN model, successfully combining the advantages of GNNs and Transformers. Our code is available at //github.com/BorgwardtLab/SAT .

As a highly ill-posed issue, single image super-resolution (SISR) has been widely investigated in recent years. The main task of SISR is to recover the information loss caused by the degradation procedure. According to the Nyquist sampling theory, the degradation leads to aliasing effect and makes it hard to restore the correct textures from low-resolution (LR) images. In practice, there are correlations and self-similarities among the adjacent patches in the natural images. This paper considers the self-similarity and proposes a hierarchical image super-resolution network (HSRNet) to suppress the influence of aliasing. We consider the SISR issue in the optimization perspective, and propose an iterative solution pattern based on the half-quadratic splitting (HQS) method. To explore the texture with local image prior, we design a hierarchical exploration block (HEB) and progressive increase the receptive field. Furthermore, multi-level spatial attention (MSA) is devised to obtain the relations of adjacent feature and enhance the high-frequency information, which acts as a crucial role for visual experience. Experimental result shows HSRNet achieves better quantitative and visual performance than other works, and remits the aliasing more effectively.

Vision Transformers (ViTs) and their multi-scale and hierarchical variations have been successful at capturing image representations but their use has been generally studied for low-resolution images (e.g. - 256x256, 384384). For gigapixel whole-slide imaging (WSI) in computational pathology, WSIs can be as large as 150000x150000 pixels at 20X magnification and exhibit a hierarchical structure of visual tokens across varying resolutions: from 16x16 images capture spatial patterns among cells, to 4096x4096 images characterizing interactions within the tissue microenvironment. We introduce a new ViT architecture called the Hierarchical Image Pyramid Transformer (HIPT), which leverages the natural hierarchical structure inherent in WSIs using two levels of self-supervised learning to learn high-resolution image representations. HIPT is pretrained across 33 cancer types using 10,678 gigapixel WSIs, 408,218 4096x4096 images, and 104M 256x256 images. We benchmark HIPT representations on 9 slide-level tasks, and demonstrate that: 1) HIPT with hierarchical pretraining outperforms current state-of-the-art methods for cancer subtyping and survival prediction, 2) self-supervised ViTs are able to model important inductive biases about the hierarchical structure of phenotypes in the tumor microenvironment.

Real-world image super-resolution is a practical image restoration problem that aims to obtain high-quality images from in-the-wild input, has recently received considerable attention with regard to its tremendous application potentials. Although deep learning-based methods have achieved promising restoration quality on real-world image super-resolution datasets, they ignore the relationship between L1- and perceptual- minimization and roughly adopt auxiliary large-scale datasets for pre-training. In this paper, we discuss the image types within a corrupted image and the property of perceptual- and Euclidean- based evaluation protocols. Then we propose a method, Real-World image Super-Resolution by Exclusionary Dual-Learning (RWSR-EDL) to address the feature diversity in perceptual- and L1- based cooperative learning. Moreover, a noise-guidance data collection strategy is developed to address the training time consumption in multiple datasets optimization. When an auxiliary dataset is incorporated, RWSR-EDL achieves promising results and repulses any training time increment by adopting the noise-guidance data collection strategy. Extensive experiments show that RWSR-EDL achieves competitive performance over state-of-the-art methods on four in-the-wild image super-resolution datasets.

Although prototypical network (ProtoNet) has proved to be an effective method for few-shot sound event detection, two problems still exist. Firstly, the small-scaled support set is insufficient so that the class prototypes may not represent the class center accurately. Secondly, the feature extractor is task-agnostic (or class-agnostic): the feature extractor is trained with base-class data and directly applied to unseen-class data. To address these issues, we present a novel mutual learning framework with transductive learning, which aims at iteratively updating the class prototypes and feature extractor. More specifically, we propose to update class prototypes with transductive inference to make the class prototypes as close to the true class center as possible. To make the feature extractor to be task-specific, we propose to use the updated class prototypes to fine-tune the feature extractor. After that, a fine-tuned feature extractor further helps produce better class prototypes. Our method achieves the F-score of 38.4$\%$ on the DCASE 2021 Task 5 evaluation set, which won the first place in the few-shot bioacoustic event detection task of Detection and Classification of Acoustic Scenes and Events (DCASE) 2021 Challenge.

Semantic segmentation from very fine resolution (VFR) urban scene images plays a significant role in several application scenarios including autonomous driving, land cover classification, and urban planning, etc. However, the tremendous details contained in the VFR image, especially the considerable variations in scale and appearance of objects, severely limit the potential of the existing deep learning approaches. Addressing such issues represents a promising research field in the remote sensing community, which paves the way for scene-level landscape pattern analysis and decision making. In this paper, we propose a Bilateral Awareness Network which contains a dependency path and a texture path to fully capture the long-range relationships and fine-grained details in VFR images. Specifically, the dependency path is conducted based on the ResT, a novel Transformer backbone with memory-efficient multi-head self-attention, while the texture path is built on the stacked convolution operation. Besides, using the linear attention mechanism, a feature aggregation module is designed to effectively fuse the dependency features and texture features. Extensive experiments conducted on the three large-scale urban scene image segmentation datasets, i.e., ISPRS Vaihingen dataset, ISPRS Potsdam dataset, and UAVid dataset, demonstrate the effectiveness of our BANet. Specifically, a 64.6% mIoU is achieved on the UAVid dataset. Code is available at //github.com/WangLibo1995/GeoSeg.

Transformers have dominated the field of natural language processing, and recently impacted the computer vision area. In the field of medical image analysis, Transformers have also been successfully applied to full-stack clinical applications, including image synthesis/reconstruction, registration, segmentation, detection, and diagnosis. Our paper presents both a position paper and a primer, promoting awareness and application of Transformers in the field of medical image analysis. Specifically, we first overview the core concepts of the attention mechanism built into Transformers and other basic components. Second, we give a new taxonomy of various Transformer architectures tailored for medical image applications and discuss their limitations. Within this review, we investigate key challenges revolving around the use of Transformers in different learning paradigms, improving the model efficiency, and their coupling with other techniques. We hope this review can give a comprehensive picture of Transformers to the readers in the field of medical image analysis.

Correlation acts as a critical role in the tracking field, especially in recent popular Siamese-based trackers. The correlation operation is a simple fusion manner to consider the similarity between the template and the search region. However, the correlation operation itself is a local linear matching process, leading to lose semantic information and fall into local optimum easily, which may be the bottleneck of designing high-accuracy tracking algorithms. Is there any better feature fusion method than correlation? To address this issue, inspired by Transformer, this work presents a novel attention-based feature fusion network, which effectively combines the template and search region features solely using attention. Specifically, the proposed method includes an ego-context augment module based on self-attention and a cross-feature augment module based on cross-attention. Finally, we present a Transformer tracking (named TransT) method based on the Siamese-like feature extraction backbone, the designed attention-based fusion mechanism, and the classification and regression head. Experiments show that our TransT achieves very promising results on six challenging datasets, especially on large-scale LaSOT, TrackingNet, and GOT-10k benchmarks. Our tracker runs at approximatively 50 fps on GPU. Code and models are available at //github.com/chenxin-dlut/TransT.

Triple extraction is an essential task in information extraction for natural language processing and knowledge graph construction. In this paper, we revisit the end-to-end triple extraction task for sequence generation. Since generative triple extraction may struggle to capture long-term dependencies and generate unfaithful triples, we introduce a novel model, contrastive triple extraction with a generative transformer. Specifically, we introduce a single shared transformer module for encoder-decoder-based generation. To generate faithful results, we propose a novel triplet contrastive training object. Moreover, we introduce two mechanisms to further improve model performance (i.e., batch-wise dynamic attention-masking and triple-wise calibration). Experimental results on three datasets (i.e., NYT, WebNLG, and MIE) show that our approach achieves better performance than that of baselines.

Top-down visual attention mechanisms have been used extensively in image captioning and visual question answering (VQA) to enable deeper image understanding through fine-grained analysis and even multiple steps of reasoning. In this work, we propose a combined bottom-up and top-down attention mechanism that enables attention to be calculated at the level of objects and other salient image regions. This is the natural basis for attention to be considered. Within our approach, the bottom-up mechanism (based on Faster R-CNN) proposes image regions, each with an associated feature vector, while the top-down mechanism determines feature weightings. Applying this approach to image captioning, our results on the MSCOCO test server establish a new state-of-the-art for the task, achieving CIDEr / SPICE / BLEU-4 scores of 117.9, 21.5 and 36.9, respectively. Demonstrating the broad applicability of the method, applying the same approach to VQA we obtain first place in the 2017 VQA Challenge.