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Transformer-based methods have made significant progress in time series forecasting (TSF). They primarily handle two types of tokens, i.e., temporal tokens that contain all variables of the same timestamp, and variable tokens that contain all input time points for a specific variable. Transformer-based methods rely on positional encoding (PE) to mark tokens' positions, facilitating the model to perceive the correlation between tokens. However, in TSF, research on PE remains insufficient. To address this gap, we conduct experiments and uncover intriguing properties of existing PEs in TSF: (i) The positional information injected by PEs diminishes as the network depth increases; (ii) Enhancing positional information in deep networks is advantageous for improving the model's performance; (iii) PE based on the similarity between tokens can improve the model's performance. Motivated by these findings, we introduce two new PEs: Temporal Position Encoding (T-PE) for temporal tokens and Variable Positional Encoding (V-PE) for variable tokens. Both T-PE and V-PE incorporate geometric PE based on tokens' positions and semantic PE based on the similarity between tokens but using different calculations. To leverage both the PEs, we design a Transformer-based dual-branch framework named T2B-PE. It first calculates temporal tokens' correlation and variable tokens' correlation respectively and then fuses the dual-branch features through the gated unit. Extensive experiments demonstrate the superior robustness and effectiveness of T2B-PE. The code is available at: \href{//github.com/jlu-phyComputer/T2B-PE}{//github.com/jlu-phyComputer/T2B-PE}.

Researchers commonly use difference-in-differences (DiD) designs to evaluate public policy interventions. While methods exist for estimating effects in the context of binary interventions, policies often result in varied exposures across regions implementing the policy. Yet, existing approaches for incorporating continuous exposures face substantial limitations in addressing confounding variables associated with intervention status, exposure levels, and outcome trends. These limitations significantly constrain policymakers' ability to fully comprehend policy impacts and design future interventions. In this work, we propose new estimators for causal effect curves within the DiD framework, accounting for multiple sources of confounding. Our approach accommodates misspecification of a subset of treatment, exposure, and outcome models while avoiding any parametric assumptions on the effect curve. We present the statistical properties of the proposed methods and illustrate their application through simulations and a study investigating the heterogeneous effects of a nutritional excise tax under different levels of accessibility to cross-border shopping.

Whole Slide Images (WSI), obtained by high-resolution digital scanning of microscope slides at multiple scales, are the cornerstone of modern Digital Pathology. However, they represent a particular challenge to AI-based/AI-mediated analysis because pathology labeling is typically done at slide-level, instead of tile-level. It is not just that medical diagnostics is recorded at the specimen level, the detection of oncogene mutation is also experimentally obtained, and recorded by initiatives like The Cancer Genome Atlas (TCGA), at the slide level. This configures a dual challenge: a) accurately predicting the overall cancer phenotype and b) finding out what cellular morphologies are associated with it at the tile level. To address these challenges, a weakly supervised Multiple Instance Learning (MIL) approach was explored for two prevalent cancer types, Invasive Breast Carcinoma (TCGA-BRCA) and Lung Squamous Cell Carcinoma (TCGA-LUSC). This approach was explored for tumor detection at low magnification levels and TP53 mutations at various levels. Our results show that a novel additive implementation of MIL matched the performance of reference implementation (AUC 0.96), and was only slightly outperformed by Attention MIL (AUC 0.97). More interestingly from the perspective of the molecular pathologist, these different AI architectures identify distinct sensitivities to morphological features (through the detection of Regions of Interest, RoI) at different amplification levels. Tellingly, TP53 mutation was most sensitive to features at the higher applications where cellular morphology is resolved.

Graph neural networks (GNN) have achieved remarkable success in a wide range of tasks by encoding features combined with topology to create effective representations. However, the fundamental problem of understanding and analyzing how graph topology influences the performance of learning models on downstream tasks has not yet been well understood. In this paper, we propose a metric, TopoInf, which characterizes the influence of graph topology by measuring the level of compatibility between the topological information of graph data and downstream task objectives. We provide analysis based on the decoupled GNNs on the contextual stochastic block model to demonstrate the effectiveness of the metric. Through extensive experiments, we demonstrate that TopoInf is an effective metric for measuring topological influence on corresponding tasks and can be further leveraged to enhance graph learning.

Dimensionality reduction techniques are widely used for visualizing high-dimensional data. However, support for interpreting patterns of dimension reduction results in the context of the original data space is often insufficient. Consequently, users may struggle to extract insights from the projections. In this paper, we introduce DimBridge, a visual analytics tool that allows users to interact with visual patterns in a projection and retrieve corresponding data patterns. DimBridge supports several interactions, allowing users to perform various analyses, from contrasting multiple clusters to explaining complex latent structures. Leveraging first-order predicate logic, DimBridge identifies subspaces in the original dimensions relevant to a queried pattern and provides an interface for users to visualize and interact with them. We demonstrate how DimBridge can help users overcome the challenges associated with interpreting visual patterns in projections.

Deep subspace clustering methods are now prominent in clustering, typically using fully connected networks and a self-representation loss function. However, these methods often struggle with overfitting and lack interpretability. In this paper, we explore an alternative clustering approach based on deep unfolding. By unfolding iterative optimization methods into neural networks, this approach offers enhanced interpretability and reliability compared to data-driven deep learning methods, and greater adaptability and generalization than model-based approaches. Hence, unfolding has become widely used in inverse imaging problems, such as image restoration, reconstruction, and super-resolution, but has not been sufficiently explored yet in the context of clustering. In this work, we introduce an innovative clustering architecture for hyperspectral images (HSI) by unfolding an iterative solver based on the Alternating Direction Method of Multipliers (ADMM) for sparse subspace clustering. To our knowledge, this is the first attempt to apply unfolding ADMM for computing the self-representation matrix in subspace clustering. Moreover, our approach captures well the structural characteristics of HSI data by employing the K nearest neighbors algorithm as part of a structure preservation module. Experimental evaluation of three established HSI datasets shows clearly the potential of the unfolding approach in HSI clustering and even demonstrates superior performance compared to state-of-the-art techniques.

Dragonfly interconnect is a crucial network technology for supercomputers. To support exascale systems, network resources are shared such that links and routers are not dedicated to any node pair. While link utilization is increased, workload performance is often offset by network contention. Recently, intelligent routing built on reinforcement learning demonstrates higher network throughput with lower packet latency. However, its effectiveness in reducing workload interference is unknown. In this work, we present extensive network simulations to study multi-workload contention under different routing mechanisms, intelligent routing and adaptive routing, on a large-scale Dragonfly system. We develop an enhanced network simulation toolkit, along with a suite of workloads with distinctive communication patterns. We also present two metrics to characterize application communication intensity. Our analysis focuses on examining how different workloads interfere with each other under different routing mechanisms by inspecting both application-level and network-level metrics. Several key insights are made from the analysis.

Graph neural networks (GNNs) have demonstrated a significant boost in prediction performance on graph data. At the same time, the predictions made by these models are often hard to interpret. In that regard, many efforts have been made to explain the prediction mechanisms of these models from perspectives such as GNNExplainer, XGNN and PGExplainer. Although such works present systematic frameworks to interpret GNNs, a holistic review for explainable GNNs is unavailable. In this survey, we present a comprehensive review of explainability techniques developed for GNNs. We focus on explainable graph neural networks and categorize them based on the use of explainable methods. We further provide the common performance metrics for GNNs explanations and point out several future research directions.

Deep neural networks (DNNs) are successful in many computer vision tasks. However, the most accurate DNNs require millions of parameters and operations, making them energy, computation and memory intensive. This impedes the deployment of large DNNs in low-power devices with limited compute resources. Recent research improves DNN models by reducing the memory requirement, energy consumption, and number of operations without significantly decreasing the accuracy. This paper surveys the progress of low-power deep learning and computer vision, specifically in regards to inference, and discusses the methods for compacting and accelerating DNN models. The techniques can be divided into four major categories: (1) parameter quantization and pruning, (2) compressed convolutional filters and matrix factorization, (3) network architecture search, and (4) knowledge distillation. We analyze the accuracy, advantages, disadvantages, and potential solutions to the problems with the techniques in each category. We also discuss new evaluation metrics as a guideline for future research.

Convolutional networks (ConvNets) have achieved great successes in various challenging vision tasks. However, the performance of ConvNets would degrade when encountering the domain shift. The domain adaptation is more significant while challenging in the field of biomedical image analysis, where cross-modality data have largely different distributions. Given that annotating the medical data is especially expensive, the supervised transfer learning approaches are not quite optimal. In this paper, we propose an unsupervised domain adaptation framework with adversarial learning for cross-modality biomedical image segmentations. Specifically, our model is based on a dilated fully convolutional network for pixel-wise prediction. Moreover, we build a plug-and-play domain adaptation module (DAM) to map the target input to features which are aligned with source domain feature space. A domain critic module (DCM) is set up for discriminating the feature space of both domains. We optimize the DAM and DCM via an adversarial loss without using any target domain label. Our proposed method is validated by adapting a ConvNet trained with MRI images to unpaired CT data for cardiac structures segmentations, and achieved very promising results.