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Computer-assisted systems are becoming broadly used in medicine. In endoscopy, most research focuses on the automatic detection of polyps or other pathologies, but localization and navigation of the endoscope are completely performed manually by physicians. To broaden this research and bring spatial Artificial Intelligence to endoscopies, data from complete procedures is needed. This paper introduces the Endomapper dataset, the first collection of complete endoscopy sequences acquired during regular medical practice, making secondary use of medical data. Its main purpose is to facilitate the development and evaluation of Visual Simultaneous Localization and Mapping (VSLAM) methods in real endoscopy data. The dataset contains more than 24 hours of video. It is the first endoscopic dataset that includes endoscope calibration as well as the original calibration videos. Meta-data and annotations associated with the dataset vary from the anatomical landmarks, procedure labeling, segmentations, reconstructions, simulated sequences with ground truth and same patient procedures. The software used in this paper is publicly available.

Sequential location recommendation plays a huge role in modern life, which can enhance user experience, bring more profit to businesses and assist in government administration. Although methods for location recommendation have evolved significantly thanks to the development of recommendation systems, there is still limited utilization of geographic information, along with the ongoing challenge of addressing data sparsity. In response, we introduce a Proximity-aware based region representation for Sequential Recommendation (PASR for short), built upon the Self-Attention Network architecture. We tackle the sparsity issue through a novel loss function employing importance sampling, which emphasizes informative negative samples during optimization. Moreover, PASR enhances the integration of geographic information by employing a self-attention-based geography encoder to the hierarchical grid and proximity grid at each GPS point. To further leverage geographic information, we utilize the proximity-aware negative samplers to enhance the quality of negative samples. We conducted evaluations using three real-world Location-Based Social Networking (LBSN) datasets, demonstrating that PASR surpasses state-of-the-art sequential location recommendation methods

Spurious correlations can cause strong biases in deep neural networks, impairing generalization ability. While most existing debiasing methods require full supervision on either spurious attributes or target labels, training a debiased model from a limited amount of both annotations is still an open question. To address this issue, we investigate an interesting phenomenon using the spectral analysis of latent representations: spuriously correlated attributes make neural networks inductively biased towards encoding lower effective rank representations. We also show that a rank regularization can amplify this bias in a way that encourages highly correlated features. Leveraging these findings, we propose a self-supervised debiasing framework potentially compatible with unlabeled samples. Specifically, we first pretrain a biased encoder in a self-supervised manner with the rank regularization, serving as a semantic bottleneck to enforce the encoder to learn the spuriously correlated attributes. This biased encoder is then used to discover and upweight bias-conflicting samples in a downstream task, serving as a boosting to effectively debias the main model. Remarkably, the proposed debiasing framework significantly improves the generalization performance of self-supervised learning baselines and, in some cases, even outperforms state-of-the-art supervised debiasing approaches.

In clinical trials of longitudinal continuous outcomes, reference based imputation (RBI) has commonly been applied to handle missing outcome data in settings where the estimand incorporates the effects of intercurrent events, e.g. treatment discontinuation. RBI was originally developed in the multiple imputation framework, however recently conditional mean imputation (CMI) combined with the jackknife estimator of the standard error was proposed as a way to obtain deterministic treatment effect estimates and correct frequentist inference. For both multiple and CMI, a mixed model for repeated measures (MMRM) is often used for the imputation model, but this can be computationally intensive to fit to multiple data sets (e.g. the jackknife samples) and lead to convergence issues with complex MMRM models with many parameters. Therefore, a step-wise approach based on sequential linear regression (SLR) of the outcomes at each visit was developed for the imputation model in the multiple imputation framework, but similar developments in the CMI framework are lacking. In this article, we fill this gap in the literature by proposing a SLR approach to implement RBI in the CMI framework, and justify its validity using theoretical results and simulations. We also illustrate our proposal on a real data application.

The moderate deviation regime is concerned with the finite block length trade-off between communication cost and error for information processing tasks in the asymptotic regime, where the communication cost approaches a capacity-like quantity and the error vanishes at the same time. We find exact characterisations of these trade-offs for a variety of fully quantum communication tasks, including quantum source coding, quantum state splitting, entanglement-assisted quantum channel coding, and entanglement-assisted quantum channel simulation. The main technical tool we derive is a tight relation between the partially smoothed max-information and the hypothesis testing relative entropy. This allows us to obtain the expansion of the partially smoothed max-information for i.i.d. states in the moderate deviation regime.

Biclustering is widely used in different kinds of fields including gene information analysis, text mining, and recommendation system by effectively discovering the local correlation between samples and features. However, many biclustering algorithms will collapse when facing heavy-tailed data. In this paper, we propose a robust version of convex biclustering algorithm with Huber loss. Yet, the newly introduced robustification parameter brings an extra burden to selecting the optimal parameters. Therefore, we propose a tuning-free method for automatically selecting the optimal robustification parameter with high efficiency. The simulation study demonstrates the more fabulous performance of our proposed method than traditional biclustering methods when encountering heavy-tailed noise. A real-life biomedical application is also presented. The R package RcvxBiclustr is available at //github.com/YifanChen3/RcvxBiclustr.

We introduce a general differentiable solver for time-dependent deformation problems with contact and friction. Our approach uses a finite element discretization with a high-order time integrator coupled with the recently proposed incremental potential contact method for handling contact and friction forces to solve PDE- and ODE-constrained optimization problems on scenes with a complex geometry. It support static and dynamic problems and differentiation with respect to all physical parameters involved in the physical problem description, which include shape, material parameters, friction parameters, and initial conditions. Our analytically derived adjoint formulation is efficient, with a small overhead (typically less than 10% for nonlinear problems) over the forward simulation, and shares many similarities with the forward problem, allowing the reuse of large parts of existing forward simulator code. We implement our approach on top of the open-source PolyFEM library, and demonstrate the applicability of our solver to shape design, initial condition optimization, and material estimation on both simulated results and in physical validations.

The problem of answering logical queries over incomplete knowledge graphs is receiving significant attention in the machine learning community. Neuro-symbolic models are a promising recent approach, showing good performance and allowing for good interpretability properties. These models rely on trained architectures to execute atomic queries, combining them with modules that simulate the symbolic operators in queries. Unfortunately, most neuro-symbolic query processors are limited to the so-called tree-like logical queries that admit a bottom-up execution, where the leaves are constant values or anchors, and the root is the target variable. Tree-like queries, while expressive, fail short to express properties in knowledge graphs that are important in practice, such as the existence of multiple edges between entities or the presence of triangles. We propose a framework for answering arbitrary conjunctive queries over incomplete knowledge graphs. The main idea of our method is to approximate a cyclic query by an infinite family of tree-like queries, and then leverage existing models for the latter. Our approximations achieve strong guarantees: they are complete, i.e. there are no false negatives, and optimal, i.e. they provide the best possible approximation using tree-like queries. Our method requires the approximations to be tree-like queries where the leaves are anchors or existentially quantified variables. Hence, we also show how some of the existing neuro-symbolic models can handle these queries, which is of independent interest. Experiments show that our approximation strategy achieves competitive results, and that including queries with existentially quantified variables tends to improve the general performance of these models, both on tree-like queries and on our approximation strategy.

The detection of Alzheimer's disease (AD) from spontaneous speech has attracted increasing attention while the sparsity of training data remains an important issue. This paper handles the issue by knowledge transfer, specifically from both speech-generic and depression-specific knowledge. The paper first studies sequential knowledge transfer from generic foundation models pretrained on large amounts of speech and text data. A block-wise analysis is performed for AD diagnosis based on the representations extracted from different intermediate blocks of different foundation models. Apart from the knowledge from speech-generic representations, this paper also proposes to simultaneously transfer the knowledge from a speech depression detection task based on the high comorbidity rates of depression and AD. A parallel knowledge transfer framework is studied that jointly learns the information shared between these two tasks. Experimental results show that the proposed method improves AD and depression detection, and produces a state-of-the-art F1 score of 0.928 for AD diagnosis on the commonly used ADReSSo dataset.

A central challenge in the verification of quantum computers is benchmarking their performance as a whole and demonstrating their computational capabilities. In this work, we find a universal model of quantum computation, Bell sampling, that can be used for both of those tasks and thus provides an ideal stepping stone towards fault-tolerance. In Bell sampling, we measure two copies of a state prepared by a quantum circuit in the transversal Bell basis. We show that the Bell samples are classically intractable to produce and at the same time constitute what we call a circuit shadow: from the Bell samples we can efficiently extract information about the quantum circuit preparing the state, as well as diagnose circuit errors. In addition to known properties that can be efficiently extracted from Bell samples, we give two new and efficient protocols, a test for the depth of the circuit and an algorithm to estimate a lower bound to the number of T gates in the circuit. With some additional measurements, our algorithm learns a full description of states prepared by circuits with low T-count.