We present a study using new computational methods, based on a novel combination of machine learning for inferring admixture hidden Markov models and probabilistic model checking, to uncover interaction styles in a mobile app. These styles are then used to inform a redesign, which is implemented, deployed, and then analysed using the same methods. The data sets are logged user traces, collected over two six-month deployments of each version, involving thousands of users and segmented into different time intervals. The methods do not assume tasks or absolute metrics such as measures of engagement, but uncover the styles through unsupervised inference of clusters and analysis with probabilistic temporal logic. For both versions there was a clear distinction between the styles adopted by users during the first day/week/month of usage, and during the second and third months, a result we had not anticipated.
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Autism spectrum disorder (ASD) is a developmental disorder characterized by significant social communication impairments and difficulties perceiving and presenting communication cues. Machine learning techniques have been broadly adopted to facilitate autism studies and assessments. However, computational models are primarily concentrated on specific analysis and validated on private datasets in the autism community, which limits comparisons across models due to privacy-preserving data sharing complications. This work presents a novel privacy-preserving open-source dataset, MMASD as a MultiModal ASD benchmark dataset, collected from play therapy interventions of children with Autism. MMASD includes data from 32 children with ASD, and 1,315 data samples segmented from over 100 hours of intervention recordings. To promote public access, each data sample consists of four privacy-preserving modalities of data: (1) optical flow, (2) 2D skeleton, (3) 3D skeleton, and (4) clinician ASD evaluation scores of children, e.g., ADOS scores. MMASD aims to assist researchers and therapists in understanding children's cognitive status, monitoring their progress during therapy, and customizing the treatment plan accordingly. It also has inspiration for downstream tasks such as action quality assessment and interpersonal synchrony estimation. MMASD dataset can be easily accessed at //github.com/Li-Jicheng/MMASD-A-Multimodal-Dataset-for-Autism-Intervention-Analysis.
With read-aloud speech synthesis achieving high naturalness scores, there is a growing research interest in synthesising spontaneous speech. However, human spontaneous face-to-face conversation has both spoken and non-verbal aspects (here, co-speech gestures). Only recently has research begun to explore the benefits of jointly synthesising these two modalities in a single system. The previous state of the art used non-probabilistic methods, which fail to capture the variability of human speech and motion, and risk producing oversmoothing artefacts and sub-optimal synthesis quality. We present the first diffusion-based probabilistic model, called Diff-TTSG, that jointly learns to synthesise speech and gestures together. Our method can be trained on small datasets from scratch. Furthermore, we describe a set of careful uni- and multi-modal subjective tests for evaluating integrated speech and gesture synthesis systems, and use them to validate our proposed approach. For synthesised examples please see //shivammehta25.github.io/Diff-TTSG
Despite the successes of probabilistic models based on passing noise through neural networks, recent work has identified that such methods often fail to capture tail behavior accurately, unless the tails of the base distribution are appropriately calibrated. To overcome this deficiency, we propose a systematic approach for analyzing the tails of random variables, and we illustrate how this approach can be used during the static analysis (before drawing samples) pass of a probabilistic programming language compiler. To characterize how the tails change under various operations, we develop an algebra which acts on a three-parameter family of tail asymptotics and which is based on the generalized Gamma distribution. Our algebraic operations are closed under addition and multiplication; they are capable of distinguishing sub-Gaussians with differing scales; and they handle ratios sufficiently well to reproduce the tails of most important statistical distributions directly from their definitions. Our empirical results confirm that inference algorithms that leverage our heavy-tailed algebra attain superior performance across a number of density modeling and variational inference tasks.
Probabilistic programming combines general computer programming, statistical inference, and formal semantics to help systems make decisions when facing uncertainty. Probabilistic programs are ubiquitous, including having a significant impact on machine intelligence. While many probabilistic algorithms have been used in practice in different domains, their automated verification based on formal semantics is still a relatively new research area. In the last two decades, it has attracted much interest. Many challenges, however, remain. The work presented in this paper, probabilistic relations, takes a step towards our vision to tackle these challenges. Our work is based on Hehner's predicative probabilistic programming, but there are several obstacles to the broader adoption of his work. Our contributions here include (1) the formalisation of its syntax and semantics by introducing an Iverson bracket notation to separate relations from arithmetic; (2) the formalisation of relations using Unifying Theories of Programming (UTP) and probabilities outside the brackets using summation over the topological space of the real numbers; (3) the constructive semantics for probabilistic loops using Kleene's fixed-point theorem; (4) the enrichment of its semantics from distributions to subdistributions and superdistributions to deal with the constructive semantics; (5) the unique fixed-point theorem to simplify the reasoning about probabilistic loops; and (6) the mechanisation of our theory in Isabelle/UTP, an implementation of UTP in Isabelle/HOL, for automated reasoning using theorem proving. We demonstrate our work with six examples, including problems in robot localisation, classification in machine learning, and the termination of probabilistic loops.
Interpretable time series prediction is crucial for safety-critical areas such as healthcare and autonomous driving. Most existing methods focus on interpreting predictions by assigning important scores to segments of time series. In this paper, we take a different and more challenging route and aim at developing a self-interpretable model, dubbed Counterfactual Time Series (CounTS), which generates counterfactual and actionable explanations for time series predictions. Specifically, we formalize the problem of time series counterfactual explanations, establish associated evaluation protocols, and propose a variational Bayesian deep learning model equipped with counterfactual inference capability of time series abduction, action, and prediction. Compared with state-of-the-art baselines, our self-interpretable model can generate better counterfactual explanations while maintaining comparable prediction accuracy.
A treatment policy defines when and what treatments are applied to affect some outcome of interest. Data-driven decision-making requires the ability to predict what happens if a policy is changed. Existing methods that predict how the outcome evolves under different scenarios assume that the tentative sequences of future treatments are fixed in advance, while in practice the treatments are determined stochastically by a policy and may depend, for example, on the efficiency of previous treatments. Therefore, the current methods are not applicable if the treatment policy is unknown or a counterfactual analysis is needed. To handle these limitations, we model the treatments and outcomes jointly in continuous time, by combining Gaussian processes and point processes. Our model enables the estimation of a treatment policy from observational sequences of treatments and outcomes, and it can predict the interventional and counterfactual progression of the outcome after an intervention on the treatment policy (in contrast with the causal effect of a single treatment). We show with real-world and semi-synthetic data on blood glucose progression that our method can answer causal queries more accurately than existing alternatives.
Multivariate sequential data collected in practice often exhibit temporal irregularities, including nonuniform time intervals and component misalignment. However, if uneven spacing and asynchrony are endogenous characteristics of the data rather than a result of insufficient observation, the information content of these irregularities plays a defining role in characterizing the multivariate dependence structure. Existing approaches for probabilistic forecasting either overlook the resulting statistical heterogeneities, are susceptible to imputation biases, or impose parametric assumptions on the data distribution. This paper proposes an end-to-end solution that overcomes these limitations by allowing the observation arrival times to play the central role of model construction, which is at the core of temporal irregularities. To acknowledge temporal irregularities, we first enable unique hidden states for components so that the arrival times can dictate when, how, and which hidden states to update. We then develop a conditional flow representation to non-parametrically represent the data distribution, which is typically non-Gaussian, and supervise this representation by carefully factorizing the log-likelihood objective to select conditional information that facilitates capturing time variation and path dependency. The broad applicability and superiority of the proposed solution are confirmed by comparing it with existing approaches through ablation studies and testing on real-world datasets.
Over the past few years, we have seen fundamental breakthroughs in core problems in machine learning, largely driven by advances in deep neural networks. At the same time, the amount of data collected in a wide array of scientific domains is dramatically increasing in both size and complexity. Taken together, this suggests many exciting opportunities for deep learning applications in scientific settings. But a significant challenge to this is simply knowing where to start. The sheer breadth and diversity of different deep learning techniques makes it difficult to determine what scientific problems might be most amenable to these methods, or which specific combination of methods might offer the most promising first approach. In this survey, we focus on addressing this central issue, providing an overview of many widely used deep learning models, spanning visual, sequential and graph structured data, associated tasks and different training methods, along with techniques to use deep learning with less data and better interpret these complex models --- two central considerations for many scientific use cases. We also include overviews of the full design process, implementation tips, and links to a plethora of tutorials, research summaries and open-sourced deep learning pipelines and pretrained models, developed by the community. We hope that this survey will help accelerate the use of deep learning across different scientific domains.
In structure learning, the output is generally a structure that is used as supervision information to achieve good performance. Considering the interpretation of deep learning models has raised extended attention these years, it will be beneficial if we can learn an interpretable structure from deep learning models. In this paper, we focus on Recurrent Neural Networks (RNNs) whose inner mechanism is still not clearly understood. We find that Finite State Automaton (FSA) that processes sequential data has more interpretable inner mechanism and can be learned from RNNs as the interpretable structure. We propose two methods to learn FSA from RNN based on two different clustering methods. We first give the graphical illustration of FSA for human beings to follow, which shows the interpretability. From the FSA's point of view, we then analyze how the performance of RNNs are affected by the number of gates, as well as the semantic meaning behind the transition of numerical hidden states. Our results suggest that RNNs with simple gated structure such as Minimal Gated Unit (MGU) is more desirable and the transitions in FSA leading to specific classification result are associated with corresponding words which are understandable by human beings.
High spectral dimensionality and the shortage of annotations make hyperspectral image (HSI) classification a challenging problem. Recent studies suggest that convolutional neural networks can learn discriminative spatial features, which play a paramount role in HSI interpretation. However, most of these methods ignore the distinctive spectral-spatial characteristic of hyperspectral data. In addition, a large amount of unlabeled data remains an unexploited gold mine for efficient data use. Therefore, we proposed an integration of generative adversarial networks (GANs) and probabilistic graphical models for HSI classification. Specifically, we used a spectral-spatial generator and a discriminator to identify land cover categories of hyperspectral cubes. Moreover, to take advantage of a large amount of unlabeled data, we adopted a conditional random field to refine the preliminary classification results generated by GANs. Experimental results obtained using two commonly studied datasets demonstrate that the proposed framework achieved encouraging classification accuracy using a small number of data for training.
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