Software is vital for the advancement of biology and medicine. Analysis of usage and impact metrics can help developers determine user and community engagement, justify additional funding, encourage additional use, identify unanticipated use cases, and help define improvement areas. However, there are challenges associated with these analyses including distorted or misleading metrics, as well as ethical and security concerns. More attention to the nuances involved in capturing impact across the spectrum of biological software is needed. Furthermore, some tools may be especially beneficial to a small audience, yet may not have compelling typical usage metrics. We propose more general guidelines, as well as strategies for more specific types of software. We highlight outstanding issues regarding how communities measure or evaluate software impact. To get a deeper understanding of current practices for software evaluations, we performed a survey of participants in the Informatics Technology for Cancer Research (ITCR) program funded by the National Cancer Institute (NCI). We also investigated software among this community and others to assess how often infrastructure that supports such evaluations is implemented and how this impacts rates of papers describing usage of the software. We find that developers recognize the utility of analyzing software usage, but struggle to find the time or funding for such analyses. We also find that infrastructure such as social media presence, more in-depth documentation, the presence of software health metrics, and clear information on how to contact developers seem to be associated with increased usage rates. Our findings can help scientific software developers make the most out of evaluations of their software.
In this paper, we introduce a novel open source toolbox for design optimization in Soft Robotics. We consider that design optimization is an important trend in Soft Robotics that is changing the way in which designs will be shared and adopted. We evaluate this toolbox on the example of a cable-driven, sensorized soft finger. For devices like these, that feature both actuation and sensing, the need for multi-objective optimization capabilities naturally arises, because at the very least, a trade-off between these two aspects has to be found. Thus, multi-objective optimization capability is one of the central features of the proposed toolbox. We evaluate the optimization of the soft finger and show that extreme points of the optimization trade-off between sensing and actuation are indeed far apart on actually fabricated devices for the established metrics. Furthermore, we provide an in depth analysis of the sim-to-real behavior of the example, taking into account factors such as the mesh density in the simulation, mechanical parameters and fabrication tolerances.
Stream processing has become a critical component in the architecture of modern applications. With the exponential growth of data generation from sources such as the Internet of Things, business intelligence, and telecommunications, real-time processing of unbounded data streams has become a necessity. DSP systems provide a solution to this challenge, offering high horizontal scalability, fault-tolerant execution, and the ability to process data streams from multiple sources in a single DSP job. Often enough though, data streams need to be enriched with extra information for correct processing, which introduces additional dependencies and potential bottlenecks. In this paper, we present an in-depth evaluation of data enrichment methods for DSP systems and identify the different use cases for stream processing in modern systems. Using a representative DSP system and conducting the evaluation in a realistic cloud environment, we found that outsourcing enrichment data to the DSP system can improve performance for specific use cases. However, this increased resource consumption highlights the need for stream processing solutions specifically designed for the performance-intensive workloads of cloud-based applications.
Large language models (LLMs) have shown remarkable capabilities in generating high-quality text and making predictions based on large amounts of data, including the media domain. However, in practical applications, the differences between the media's use cases and the general-purpose applications of LLMs have become increasingly apparent, especially Chinese. This paper examines the unique characteristics of media-domain-specific LLMs compared to general LLMs, designed a diverse set of task instruction types to cater the specific requirements of the domain and constructed unique datasets that are tailored to the media domain. Based on these, we proposed MediaGPT, a domain-specific LLM for the Chinese media domain, training by domain-specific data and experts SFT data. By performing human experts evaluation and strong model evaluation on a validation set, this paper demonstrated that MediaGPT outperforms mainstream models on various Chinese media domain tasks and verifies the importance of domain data and domain-defined prompt types for building an effective domain-specific LLM.
The advent of 5G New Radio (NR) technology has revolutionized the landscape of wireless communication, offering various enhancements such as elevated system capacity, improved spectrum efficiency, and higher data transmission rates. To achieve these benefits, 5G has implemented the Ultra-Dense Network (UDN) architecture, characterized by the deployment of numerous small general Node B (gNB) units. While this approach boosts system capacity and frequency reuse, it also raises concerns such as increased signal interference, longer handover times, and higher handover failure rates. To address these challenges, the critical factor of Time to Trigger (TTT) in handover management must be accurately determined. Furthermore, the density of gNBs has a significant impact on handover performance. This study provides a comprehensive analysis of 5G handover management. Through the development and utilization of a downlink system-level simulator, the effects of various TTT values and gNB densities on 5G handover were evaluated, taking into consideration the movement of Traffic Users (TUs) with varying velocities. Simulation results showed that the handover performance can be optimized by adjusting the TTT under different gNB densities, providing valuable insights into the proper selection of TTT, UDN, and TU velocity to enhance 5G handover performance.
Chat Generative Pre-trained Transformer (ChatGPT) has gained significant interest and attention since its launch in November 2022. It has shown impressive performance in various domains, including passing exams and creative writing. However, challenges and concerns related to biases and trust persist. In this work, we present a comprehensive review of over 100 Scopus-indexed publications on ChatGPT, aiming to provide a taxonomy of ChatGPT research and explore its applications. We critically analyze the existing literature, identifying common approaches employed in the studies. Additionally, we investigate diverse application areas where ChatGPT has found utility, such as healthcare, marketing and financial services, software engineering, academic and scientific writing, research and education, environmental science, and natural language processing. Through examining these applications, we gain valuable insights into the potential of ChatGPT in addressing real-world challenges. We also discuss crucial issues related to ChatGPT, including biases and trustworthiness, emphasizing the need for further research and development in these areas. Furthermore, we identify potential future directions for ChatGPT research, proposing solutions to current challenges and speculating on expected advancements. By fully leveraging the capabilities of ChatGPT, we can unlock its potential across various domains, leading to advancements in conversational AI and transformative impacts in society.
The explosive advent of the blockchain technology has led to hundreds of blockchain systems in the industry, thousands of academic papers published over the last few years, and an even larger number of new initiatives and projects. Despite the emerging consolidation efforts, the area remains highly turbulent without systematization, educational materials, or cross-system comparative analysis. In this paper, we provide a systematic and comprehensive study of four popular yet widely different blockchain systems: Bitcoin, Ethereum, Hyperledger Fabric, and IOTA. The study is presented as a cross-system comparison, which is organized by clearly identified aspects: definitions, roles of the participants, entities, and the characteristics and design of each of the commonly used layers in the cross-system blockchain architecture. Our exploration goes deeper compared to what is currently available in academic surveys and tutorials. For example, we provide the first extensive coverage of the storage layer in Ethereum and the most comprehensive explanation of the consensus protocol in IOTA. The exposition is due to the consolidation of fragmented information gathered from white and yellow papers, academic publications, blogs, developer documentation, communication with the developers, as well as additional analysis gleaned from the source code. We hope that this survey will help the readers gain in-depth understanding of the design principles behind blockchain systems and contribute towards systematization of the area.
BACKGROUND: Software Process Improvement (SPI) is a systematic approach to increase the efficiency and effectiveness of a software development organization and to enhance software products. OBJECTIVE: This paper aims to identify and characterize evaluation strategies and measurements used to assess the impact of different SPI initiatives. METHOD: The systematic literature review includes 148 papers published between 1991 and 2008. The selected papers were classified according to SPI initiative, applied evaluation strategies, and measurement perspectives. Potential confounding factors interfering with the evaluation of the improvement effort were assessed. RESULTS: Seven distinct evaluation strategies were identified, wherein the most common one, "Pre-Post Comparison" was applied in 49 percent of the inspected papers. Quality was the most measured attribute (62 percent), followed by Cost (41 percent), and Schedule (18 percent). Looking at measurement perspectives, "Project" represents the majority with 66 percent. CONCLUSION: The evaluation validity of SPI initiatives is challenged by the scarce consideration of potential confounding factors, particularly given that "Pre-Post Comparison" was identified as the most common evaluation strategy, and the inaccurate descriptions of the evaluation context. Measurements to assess the short and mid-term impact of SPI initiatives prevail, whereas long-term measurements in terms of customer satisfaction and return on investment tend to be less used.
User-generated content from social media is produced in many languages, making it technically challenging to compare the discussed themes from one domain across different cultures and regions. It is relevant for domains in a globalized world, such as market research, where people from two nations and markets might have different requirements for a product. We propose a simple, modern, and effective method for building a single topic model with sentiment analysis capable of covering multiple languages simultanteously, based on a pre-trained state-of-the-art deep neural network for natural language understanding. To demonstrate its feasibility, we apply the model to newspaper articles and user comments of a specific domain, i.e., organic food products and related consumption behavior. The themes match across languages. Additionally, we obtain an high proportion of stable and domain-relevant topics, a meaningful relation between topics and their respective textual contents, and an interpretable representation for social media documents. Marketing can potentially benefit from our method, since it provides an easy-to-use means of addressing specific customer interests from different market regions around the globe. For reproducibility, we provide the code, data, and results of our study.
With the advances of data-driven machine learning research, a wide variety of prediction problems have been tackled. It has become critical to explore how machine learning and specifically deep learning methods can be exploited to analyse healthcare data. A major limitation of existing methods has been the focus on grid-like data; however, the structure of physiological recordings are often irregular and unordered which makes it difficult to conceptualise them as a matrix. As such, graph neural networks have attracted significant attention by exploiting implicit information that resides in a biological system, with interactive nodes connected by edges whose weights can be either temporal associations or anatomical junctions. In this survey, we thoroughly review the different types of graph architectures and their applications in healthcare. We provide an overview of these methods in a systematic manner, organized by their domain of application including functional connectivity, anatomical structure and electrical-based analysis. We also outline the limitations of existing techniques and discuss potential directions for future research.
In humans, Attention is a core property of all perceptual and cognitive operations. Given our limited ability to process competing sources, attention mechanisms select, modulate, and focus on the information most relevant to behavior. For decades, concepts and functions of attention have been studied in philosophy, psychology, neuroscience, and computing. For the last six years, this property has been widely explored in deep neural networks. Currently, the state-of-the-art in Deep Learning is represented by neural attention models in several application domains. This survey provides a comprehensive overview and analysis of developments in neural attention models. We systematically reviewed hundreds of architectures in the area, identifying and discussing those in which attention has shown a significant impact. We also developed and made public an automated methodology to facilitate the development of reviews in the area. By critically analyzing 650 works, we describe the primary uses of attention in convolutional, recurrent networks and generative models, identifying common subgroups of uses and applications. Furthermore, we describe the impact of attention in different application domains and their impact on neural networks' interpretability. Finally, we list possible trends and opportunities for further research, hoping that this review will provide a succinct overview of the main attentional models in the area and guide researchers in developing future approaches that will drive further improvements.