Objectives: Present a novel deep learning-based skull stripping algorithm for magnetic resonance imaging (MRI) that works directly in the information rich k-space. Materials and Methods: Using two datasets from different institutions with a total of 36,900 MRI slices, we trained a deep learning-based model to work directly with the complex raw k-space data. Skull stripping performed by HD-BET (Brain Extraction Tool) in the image domain were used as the ground truth. Results: Both datasets were very similar to the ground truth (DICE scores of 92\%-98\% and Hausdorff distances of under 5.5 mm). Results on slices above the eye-region reach DICE scores of up to 99\%, while the accuracy drops in regions around the eyes and below, with partially blurred output. The output of k-strip often smoothed edges at the demarcation to the skull. Binary masks are created with an appropriate threshold. Conclusion: With this proof-of-concept study, we were able to show the feasibility of working in the k-space frequency domain, preserving phase information, with consistent results. Future research should be dedicated to discovering additional ways the k-space can be used for innovative image analysis and further workflows.
The first linear programming bound of McEliece, Rodemich, Rumsey, and Welch is the best known asymptotic upper bound for binary codes, for a certain subrange of distances. Starting from the work of Friedman and Tillich, there are, by now, some arguably easier and more direct arguments for this bound. We show that this more recent line of argument runs into certain difficulties if one tries to go beyond this bound (say, towards the second linear programming bound of McEliece, Rodemich, Rumsey, and Welch).
This work introduces a stabilised finite element formulation for the Stokes flow problem with a nonlinear slip boundary condition of friction type. The boundary condition is enforced with the help of an additional Lagrange multiplier and the stabilised formulation is based on simultaneously stabilising both the pressure and the Lagrange multiplier. We establish the stability and the a priori error analyses, and perform a numerical convergence study in order to verify the theory.
The limited memory steepest descent method (Fletcher, 2012) for unconstrained optimization problems stores a few past gradients to compute multiple stepsizes at once. We review this method and propose new variants. For strictly convex quadratic objective functions, we study the numerical behavior of different techniques to compute new stepsizes. In particular, we introduce a method to improve the use of harmonic Ritz values. We also show the existence of a secant condition associated with LMSD, where the approximating Hessian is projected onto a low-dimensional space. In the general nonlinear case, we propose two new alternatives to Fletcher's method: first, the addition of symmetry constraints to the secant condition valid for the quadratic case; second, a perturbation of the last differences between consecutive gradients, to satisfy multiple secant equations simultaneously. We show that Fletcher's method can also be interpreted from this viewpoint.
Introduction: Oblique Target-rotation in the context of exploratory factor analysis is a relevant method for the investigation of the oblique independent clusters model. It was argued that minimizing single cross-loadings by means of target rotation may lead to large effects of sampling error on the target rotated factor solutions. Method: In order to minimize effects of sampling error on results of Target-rotation we propose to compute the mean cross-loadings for each block of salient loadings of the independent clusters model and to perform target rotation for the block-wise mean cross-loadings. The resulting transformation-matrix is than applied to the complete unrotated loading matrix in order to produce mean Target-rotated factors. Results: A simulation study based on correlated independent factor models revealed that mean oblique Target-rotation resulted in smaller negative bias of factor inter-correlations than conventional Target-rotation based on single loadings, especially when sample size was small and when the number of factors was large. An empirical example revealed that the similarity of Target-rotated factors computed for small subsamples with Target-rotated factors of the total sample was more pronounced for mean Target-rotation than for conventional Target-rotation. Discussion: Mean Target-rotation can be recommended in the context of oblique independent factor models, especially for small samples. An R-script and an SPSS-script for this form of Target-rotation are provided in the Appendix.
This study addresses a class of linear mixed-integer programming (MILP) problems that involve uncertainty in the objective function parameters. The parameters are assumed to form a random vector, whose probability distribution can only be observed through a finite training data set. Unlike most of the related studies in the literature, we also consider uncertainty in the underlying data set. The data uncertainty is described by a set of linear constraints for each random sample, and the uncertainty in the distribution (for a fixed realization of data) is defined using a type-1 Wasserstein ball centered at the empirical distribution of the data. The overall problem is formulated as a three-level distributionally robust optimization (DRO) problem. First, we prove that the three-level problem admits a single-level MILP reformulation, if the class of loss functions is restricted to biaffine functions. Secondly, it turns out that for several particular forms of data uncertainty, the outlined problem can be solved reasonably fast by leveraging the nominal MILP problem. Finally, we conduct a computational study, where the out-of-sample performance of our model and computational complexity of the proposed MILP reformulation are explored numerically for several application domains.
The distribution regression problem encompasses many important statistics and machine learning tasks, and arises in a large range of applications. Among various existing approaches to tackle this problem, kernel methods have become a method of choice. Indeed, kernel distribution regression is both computationally favorable, and supported by a recent learning theory. This theory also tackles the two-stage sampling setting, where only samples from the input distributions are available. In this paper, we improve the learning theory of kernel distribution regression. We address kernels based on Hilbertian embeddings, that encompass most, if not all, of the existing approaches. We introduce the novel near-unbiased condition on the Hilbertian embeddings, that enables us to provide new error bounds on the effect of the two-stage sampling, thanks to a new analysis. We show that this near-unbiased condition holds for three important classes of kernels, based on optimal transport and mean embedding. As a consequence, we strictly improve the existing convergence rates for these kernels. Our setting and results are illustrated by numerical experiments.
The numerical solution of continuum damage mechanics (CDM) problems suffers from critical points during the material softening stage, and consequently existing iterative solvers are subject to a trade-off between computational expense and solution accuracy. Displacement-controlled arc-length methods were developed to address these challenges, but are currently applicable only to geometrically non-linear problems. In this work, we present a novel displacement-controlled arc-length (DAL) method for CDM problems in both local damage and non-local gradient damage versions. The analytical tangent matrix is derived for the DAL solver in both of the local and the non-local models. In addition, several consistent and non-consistent implementation algorithms are proposed, implemented, and evaluated. Unlike existing force-controlled arc-length solvers that monolithically scale the external force vector, the proposed method treats the external force vector as an independent variable and determines the position of the system on the equilibrium path based on all the nodal variations of the external force vector. Such a flexible approach renders the proposed solver to be substantially more efficient and versatile than existing solvers used in CDM problems. The considerable advantages of the proposed DAL algorithm are demonstrated against several benchmark 1D problems with sharp snap-backs and 2D examples with various boundary conditions and loading scenarios, where the proposed method drastically outperforms existing conventional approaches in terms of accuracy, computational efficiency, and the ability to predict the complete equilibrium path including all critical points.
The aim of this paper is to combine several Ivev-like modal systems characterized by 4-valued non-deterministic matrices (Nmatrices) with IDM4, a 4-valued expansion of Belnap-Dunn's logic FDE with an implication introduced by Pynko in 1999. In order to to this, we introduce a new methodology for combining logics which are characterized by means of swap structures, based on what we call superposition of snapshots. In particular, the combination of IDM4 with Tm, the 4-valued Ivlev's version of KT, will be analyzed with more details. From the semantical perspective, the idea is to combine the 4-valued swap structures (Nmatrices) for Tm (and several of its extensions) with the 4-valued twist structure (logical matrix) for IDM4. This superposition produces a universe of 6 snapshots, with 3 of them being designated. The multioperators over the new universe are defined by combining the specifications of the given swap and twist structures. This gives origin to 6 different paradefinite Ivlev-like modal logics, each one of them characterized by a 6-valued Nmatrix, and conservatively extending the original modal logic and IDM4. This important feature allows us to consider the proposed construction as a genuine technique for combining logics. In addition, it is possible to define in the combined logics a classicality operator in the sense of logics of evidence and truth (LETs). A sound and complete Hilbert-style axiomatization is also presented for the 6 combined systems, as well as a very simple Prolog program which implements the swap structures semantics for the 6 systems, which gives a decision procedure for satisfiability, refutability and validity of formulas in these logics.
The Koopman operator provides a linear perspective on non-linear dynamics by focusing on the evolution of observables in an invariant subspace. Observables of interest are typically linearly reconstructed from the Koopman eigenfunctions. Despite the broad use of Koopman operators over the past few years, there exist some misconceptions about the applicability of Koopman operators to dynamical systems with more than one fixed point. In this work, an explanation is provided for the mechanism of lifting for the Koopman operator of nonlinear systems with multiple attractors. Considering the example of the Duffing oscillator, we show that by exploiting the inherent symmetry between the basins of attraction, a linear reconstruction with three degrees of freedom in the Koopman observable space is sufficient to globally linearize the system.
We present an algorithm to approximate the real trilogarithm for a real argument with IEEE 754-1985 double precision accuracy. The approximation is structured such that it can make use of instruction-level parallelism when executed on appropriate CPUs.