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We develop a Bayesian semi-parametric model for the estimating the impact of dynamic treatment rules on survival among patients diagnosed with pediatric acute myeloid leukemia (AML). The data consist of a subset of patients enrolled in the phase III AAML1031 clinical trial in which patients move through a sequence of four treatment courses. At each course, they undergo treatment that may or may not include anthracyclines (ACT). While ACT is known to be effective at treating AML, it is also cardiotoxic and can lead to early death for some patients. Our task is to estimate the potential survival probability under hypothetical dynamic ACT treatment strategies, but there are several impediments. First, since ACT was not randomized in the trial, its effect on survival is confounded over time. Second, subjects initiate the next course depending on when they recover from the previous course, making timing potentially informative of subsequent treatment and survival. Third, patients may die or drop out before ever completing the full treatment sequence. We develop a generative Bayesian semi-parametric model based on Gamma Process priors to address these complexities. At each treatment course, the model captures subjects' transition to subsequent treatment or death in continuous time under a given rule. A g-computation procedure is used to compute a posterior over potential survival probability that is adjusted for time-varying confounding. Using this approach, we conduct posterior inference for the efficacy of hypothetical treatment rules that dynamically modify ACT based on evolving cardiac function.

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2023 年 2 月 1 日

In the dominant paradigm for designing equitable machine learning systems, one works to ensure that model predictions satisfy various fairness criteria, such as parity in error rates across race, gender, and other legally protected traits. That approach, however, typically ignores the downstream decisions and outcomes that predictions affect, and, as a result, can induce unexpected harms. Here we present an alternative framework for fairness that directly anticipates the consequences of decisions. Stakeholders first specify preferences over the possible outcomes of an algorithmically informed decision-making process. For example, lenders may prefer extending credit to those most likely to repay a loan, while also preferring similar lending rates across neighborhoods. One then searches the space of decision policies to maximize the specified utility. We develop and describe a method for efficiently learning these optimal policies from data for a large family of expressive utility functions, facilitating a more holistic approach to equitable decision-making.

Improving road safety is hugely important with the number of deaths on the world's roads remaining unacceptably high; an estimated 1.35 million people die each year (WHO, 2020). Current practice for treating collision hotspots is almost always reactive: once a threshold level of collisions has been exceeded during some predetermined observation period, treatment is applied (e.g. road safety cameras). However, more recently, methodology has been developed to predict collision counts at potential hotspots in future time periods, with a view to a more proactive treatment of road safety hotspots. Dynamic linear models provide a flexible framework for predicting collisions and thus enabling such a proactive treatment. In this paper, we demonstrate how such models can be used to capture both seasonal variability and spatial dependence in time course collision rates at several locations. The model allows for within- and out-of-sample forecasting for locations which are fully observed and for locations where some data are missing. We illustrate our approach using collision rate data from 8 Traffic Administration Zones in North Florida, USA, and find that the model provides a good description of the underlying process and reasonable forecast accuracy.

Causal inference on populations embedded in social networks poses technical challenges, since the typical no interference assumption may no longer hold. For instance, in the context of social research, the outcome of a study unit will likely be affected by an intervention or treatment received by close neighbors. While inverse probability-of-treatment weighted (IPW) estimators have been developed for this setting, they are often highly inefficient. In this work, we assume that the network is a union of disjoint components and propose doubly robust (DR) estimators combining models for treatment and outcome that are consistent and asymptotically normal if either model is correctly specified. We present empirical results that illustrate the DR property and the efficiency gain of DR over IPW estimators when both the outcome and treatment models are correctly specified. Simulations are conducted for networks with equal and unequal component sizes and outcome data with and without a multilevel structure. We apply these methods in an illustrative analysis using the Add Health network, examining the impact of maternal college education on adolescent school performance, both direct and indirect.

The problem of generalization and transportation of treatment effect estimates from a study sample to a target population is central to empirical research and statistical methodology. In both randomized experiments and observational studies, weighting methods are often used with this objective. Traditional methods construct the weights by separately modeling the treatment assignment and study selection probabilities and then multiplying functions (e.g., inverses) of their estimates. In this work, we provide a justification and an implementation for weighting in a single step. We show a formal connection between this one-step method and inverse probability and inverse odds weighting. We demonstrate that the resulting estimator for the target average treatment effect is consistent, asymptotically Normal, multiply robust, and semiparametrically efficient. We evaluate the performance of the one-step estimator in a simulation study. We illustrate its use in a case study on the effects of physician racial diversity on preventive healthcare utilization among Black men in California. We provide R code implementing the methodology.

Regression models that ignore measurement error in predictors may produce highly biased estimates leading to erroneous inferences. It is well known that it is extremely difficult to take measurement error into account in Gaussian nonparametric regression. This problem becomes tremendously more difficult when considering other families such as logistic regression, Poisson and negative-binomial. For the first time, we present a method aiming to correct for measurement error when estimating regression functions flexibly covering virtually all distributions and link functions regularly considered in generalized linear models. This approach depends on approximating the first and the second moment of the response after integrating out the true unobserved predictors in a semiparametric generalized linear model. Unlike previous methods, this method is not restricted to truncated splines and can utilize various basis functions. Through extensive simulation studies, we study the performance of our method under many scenarios.

The prediction of financial markets is a challenging yet important task. In modern electronically-driven markets, traditional time-series econometric methods often appear incapable of capturing the true complexity of the multi-level interactions driving the price dynamics. While recent research has established the effectiveness of traditional machine learning (ML) models in financial applications, their intrinsic inability to deal with uncertainties, which is a great concern in econometrics research and real business applications, constitutes a major drawback. Bayesian methods naturally appear as a suitable remedy conveying the predictive ability of ML methods with the probabilistically-oriented practice of econometric research. By adopting a state-of-the-art second-order optimization algorithm, we train a Bayesian bilinear neural network with temporal attention, suitable for the challenging time-series task of predicting mid-price movements in ultra-high-frequency limit-order book markets. We thoroughly compare our Bayesian model with traditional ML alternatives by addressing the use of predictive distributions to analyze errors and uncertainties associated with the estimated parameters and model forecasts. Our results underline the feasibility of the Bayesian deep-learning approach and its predictive and decisional advantages in complex econometric tasks, prompting future research in this direction.

Probabilistic graphical models (PGMs) provide a compact and flexible framework to model very complex real-life phenomena. They combine the probability theory which deals with uncertainty and logical structure represented by a graph which allows one to cope with the computational complexity and also interpret and communicate the obtained knowledge. In the thesis, we consider two different types of PGMs: Bayesian networks (BNs) which are static, and continuous time Bayesian networks which, as the name suggests, have a temporal component. We are interested in recovering their true structure, which is the first step in learning any PGM. This is a challenging task, which is interesting in itself from the causal point of view, for the purposes of interpretation of the model and the decision-making process. All approaches for structure learning in the thesis are united by the same idea of maximum likelihood estimation with the LASSO penalty. The problem of structure learning is reduced to the problem of finding non-zero coefficients in the LASSO estimator for a generalized linear model. In the case of CTBNs, we consider the problem both for complete and incomplete data. We support the theoretical results with experiments.

Constrained clustering is a semi-supervised task that employs a limited amount of labelled data, formulated as constraints, to incorporate domain-specific knowledge and to significantly improve clustering accuracy. Previous work has considered exact optimization formulations that can guarantee optimal clustering while satisfying all constraints, however these approaches lack interpretability. Recently, decision-trees have been used to produce inherently interpretable clustering solutions, however existing approaches do not support clustering constraints and do not provide strong theoretical guarantees on solution quality. In this work, we present a novel SAT-based framework for interpretable clustering that supports clustering constraints and that also provides strong theoretical guarantees on solution quality. We also present new insight into the trade-off between interpretability and satisfaction of such user-provided constraints. Our framework is the first approach for interpretable and constrained clustering. Experiments with a range of real-world and synthetic datasets demonstrate that our approach can produce high-quality and interpretable constrained clustering solutions.

Dynamic treatment rules or policies are a sequence of decision functions over multiple stages that are tailored to individual features. One important class of treatment policies for practice, namely multi-stage stationary treatment policies, prescribe treatment assignment probabilities using the same decision function over stages, where the decision is based on the same set of features consisting of both baseline variables (e.g., demographics) and time-evolving variables (e.g., routinely collected disease biomarkers). Although there has been extensive literature to construct valid inference for the value function associated with the dynamic treatment policies, little work has been done for the policies themselves, especially in the presence of high dimensional feature variables. We aim to fill in the gap in this work. Specifically, we first estimate the multistage stationary treatment policy based on an augmented inverse probability weighted estimator for the value function to increase the asymptotic efficiency, and further apply a penalty to select important feature variables. We then construct one-step improvement of the policy parameter estimators. Theoretically, we show that the improved estimators are asymptotically normal, even if nuisance parameters are estimated at a slow convergence rate and the dimension of the feature variables increases exponentially with the sample size. Our numerical studies demonstrate that the proposed method has satisfactory performance in small samples, and that the performance can be improved with a choice of the augmentation term that approximates the rewards or minimizes the variance of the value function.

Likelihood-free inference methods typically make use of a distance between simulated and real data. A common example is the maximum mean discrepancy (MMD), which has previously been used for approximate Bayesian computation, minimum distance estimation, generalised Bayesian inference, and within the nonparametric learning framework. The MMD is commonly estimated at a root-$m$ rate, where $m$ is the number of simulated samples. This can lead to significant computational challenges since a large $m$ is required to obtain an accurate estimate, which is crucial for parameter estimation. In this paper, we propose a novel estimator for the MMD with significantly improved sample complexity. The estimator is particularly well suited for computationally expensive smooth simulators with low- to mid-dimensional inputs. This claim is supported through both theoretical results and an extensive simulation study on benchmark simulators.

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