Latent dynamical models are commonly used to learn the distribution of a latent dynamical process that represents a sequence of noisy data samples. However, producing samples from such models with high fidelity is challenging due to the complexity and variability of latent and observation dynamics. Recent advances in diffusion-based generative models, such as DDPM and NCSN, have shown promising alternatives to state-of-the-art latent generative models, such as Neural ODEs, RNNs, and Normalizing flow networks, for generating high-quality sequential samples from a prior distribution. However, their application in modeling sequential data with latent dynamical models is yet to be explored. Here, we propose a novel latent variable model named latent dynamical implicit diffusion processes (LDIDPs), which utilizes implicit diffusion processes to sample from dynamical latent processes and generate sequential observation samples accordingly. We tested LDIDPs on synthetic and simulated neural decoding problems. We demonstrate that LDIDPs can accurately learn the dynamics over latent dimensions. Furthermore, the implicit sampling method allows for the computationally efficient generation of high-quality sequential data samples from the latent and observation spaces.
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The principle of boosting in supervised learning involves combining multiple weak classifiers to obtain a stronger classifier. AdaBoost has the reputation to be a perfect example of this approach. We have previously shown that AdaBoost is not truly an optimization algorithm. This paper shows that AdaBoost is an algorithm in name only, as the resulting combination of weak classifiers can be explicitly calculated using a truth table. This study is carried out by considering a problem with two classes and is illustrated by the particular case of three binary classifiers and presents results in comparison with those from the implementation of AdaBoost algorithm of the Python library scikit-learn.
It is often useful to have polynomial upper or lower bounds on a one-dimensional function that are valid over a finite interval, called a trust region. A classical way to produce polynomial bounds of degree $k$ involves bounding the range of the $k$th derivative over the trust region, but this produces suboptimal bounds. We improve on this by deriving sharp polynomial upper and lower bounds for a wide variety of one-dimensional functions. We further show that sharp bounds of degree $k$ are at least $k+1$ times tighter than those produced by the classical method, asymptotically as the width of the trust region approaches zero. We discuss how these sharp bounds can be used in majorization-minimization optimization, among other applications.
Image captioning is conventionally formulated as the task of generating captions for images that match the distribution of reference image-caption pairs. However, reference captions in standard captioning datasets are short and may not uniquely identify the images they describe. These problems are further exacerbated when models are trained directly on image-alt text pairs collected from the internet. In this work, we show that it is possible to generate more specific captions with minimal changes to the training process. We implement classifier-free guidance for an autoregressive captioning model by fine-tuning it to estimate both conditional and unconditional distributions over captions. The guidance scale applied at decoding controls a trade-off between maximizing $p(\mathrm{caption}|\mathrm{image})$ and $p(\mathrm{image}|\mathrm{caption})$. Compared to standard greedy decoding, decoding with a guidance scale of 2 substantially improves reference-free metrics such as CLIPScore (0.808 vs. 0.775) and caption$\to$image retrieval performance in the CLIP embedding space (recall@1 44.6% vs. 26.5%), but worsens standard reference-based captioning metrics (e.g., CIDEr 78.6 vs 126.1). We further explore the use of language models to guide the decoding process, obtaining small improvements over the Pareto frontier of reference-free vs. reference-based captioning metrics that arises from classifier-free guidance, and substantially improving the quality of captions generated from a model trained only on minimally curated web data.
Matrix factorization is an inference problem that has acquired importance due to its vast range of applications that go from dictionary learning to recommendation systems and machine learning with deep networks. The study of its fundamental statistical limits represents a true challenge, and despite a decade-long history of efforts in the community, there is still no closed formula able to describe its optimal performances in the case where the rank of the matrix scales linearly with its size. In the present paper, we study this extensive rank problem, extending the alternative 'decimation' procedure that we recently introduced, and carry out a thorough study of its performance. Decimation aims at recovering one column/line of the factors at a time, by mapping the problem into a sequence of neural network models of associative memory at a tunable temperature. Though being sub-optimal, decimation has the advantage of being theoretically analyzable. We extend its scope and analysis to two families of matrices. For a large class of compactly supported priors, we show that the replica symmetric free entropy of the neural network models takes a universal form in the low temperature limit. For sparse Ising prior, we show that the storage capacity of the neural network models diverges as sparsity in the patterns increases, and we introduce a simple algorithm based on a ground state search that implements decimation and performs matrix factorization, with no need of an informative initialization.
Joint multimodal functional data acquisition, where functional data from multiple modes are measured simultaneously from the same subject, has emerged as an exciting modern approach enabled by recent engineering breakthroughs in the neurological and biological sciences. One prominent motivation to acquire such data is to enable new discoveries of the underlying connectivity by combining multimodal signals. Despite the scientific interest, there remains a gap in principled statistical methods for estimating the graph underlying multimodal functional data. To this end, we propose a new integrative framework that models the data generation process and identifies operators mapping from the observation space to the latent space. We then develop an estimator that simultaneously estimates the transformation operators and the latent graph. This estimator is based on the partial correlation operator, which we rigorously extend from the multivariate to the functional setting. Our procedure is provably efficient, with the estimator converging to a stationary point with quantifiable statistical error. Furthermore, we show recovery of the latent graph under mild conditions. Our work is applied to analyze simultaneously acquired multimodal brain imaging data where the graph indicates functional connectivity of the brain. We present simulation and empirical results that support the benefits of joint estimation.
The use of multiple imputation (MI) is becoming increasingly popular for addressing missing data. Although some conventional MI approaches have been well studied and have shown empirical validity, they have limitations when processing large datasets with complex data structures. Their imputation performances usually rely on the proper specification of imputation models, which requires expert knowledge of the inherent relations among variables. Moreover, these standard approaches tend to be computationally inefficient for medium and large datasets. In this paper, we propose a scalable MI framework mixgb, which is based on XGBoost, subsampling, and predictive mean matching. Our approach leverages the power of XGBoost, a fast implementation of gradient boosted trees, to automatically capture interactions and non-linear relations while achieving high computational efficiency. In addition, we incorporate subsampling and predictive mean matching to reduce bias and better account for appropriate imputation variability. The proposed framework is implemented in an R package mixgb. Supplementary materials for this article are available online.
The conjoining of dynamical systems and deep learning has become a topic of great interest. In particular, neural differential equations (NDEs) demonstrate that neural networks and differential equation are two sides of the same coin. Traditional parameterised differential equations are a special case. Many popular neural network architectures, such as residual networks and recurrent networks, are discretisations. NDEs are suitable for tackling generative problems, dynamical systems, and time series (particularly in physics, finance, ...) and are thus of interest to both modern machine learning and traditional mathematical modelling. NDEs offer high-capacity function approximation, strong priors on model space, the ability to handle irregular data, memory efficiency, and a wealth of available theory on both sides. This doctoral thesis provides an in-depth survey of the field. Topics include: neural ordinary differential equations (e.g. for hybrid neural/mechanistic modelling of physical systems); neural controlled differential equations (e.g. for learning functions of irregular time series); and neural stochastic differential equations (e.g. to produce generative models capable of representing complex stochastic dynamics, or sampling from complex high-dimensional distributions). Further topics include: numerical methods for NDEs (e.g. reversible differential equations solvers, backpropagation through differential equations, Brownian reconstruction); symbolic regression for dynamical systems (e.g. via regularised evolution); and deep implicit models (e.g. deep equilibrium models, differentiable optimisation). We anticipate this thesis will be of interest to anyone interested in the marriage of deep learning with dynamical systems, and hope it will provide a useful reference for the current state of the art.
Causality can be described in terms of a structural causal model (SCM) that carries information on the variables of interest and their mechanistic relations. For most processes of interest the underlying SCM will only be partially observable, thus causal inference tries to leverage any exposed information. Graph neural networks (GNN) as universal approximators on structured input pose a viable candidate for causal learning, suggesting a tighter integration with SCM. To this effect we present a theoretical analysis from first principles that establishes a novel connection between GNN and SCM while providing an extended view on general neural-causal models. We then establish a new model class for GNN-based causal inference that is necessary and sufficient for causal effect identification. Our empirical illustration on simulations and standard benchmarks validate our theoretical proofs.
It is always well believed that modeling relationships between objects would be helpful for representing and eventually describing an image. Nevertheless, there has not been evidence in support of the idea on image description generation. In this paper, we introduce a new design to explore the connections between objects for image captioning under the umbrella of attention-based encoder-decoder framework. Specifically, we present Graph Convolutional Networks plus Long Short-Term Memory (dubbed as GCN-LSTM) architecture that novelly integrates both semantic and spatial object relationships into image encoder. Technically, we build graphs over the detected objects in an image based on their spatial and semantic connections. The representations of each region proposed on objects are then refined by leveraging graph structure through GCN. With the learnt region-level features, our GCN-LSTM capitalizes on LSTM-based captioning framework with attention mechanism for sentence generation. Extensive experiments are conducted on COCO image captioning dataset, and superior results are reported when comparing to state-of-the-art approaches. More remarkably, GCN-LSTM increases CIDEr-D performance from 120.1% to 128.7% on COCO testing set.
We investigate a lattice-structured LSTM model for Chinese NER, which encodes a sequence of input characters as well as all potential words that match a lexicon. Compared with character-based methods, our model explicitly leverages word and word sequence information. Compared with word-based methods, lattice LSTM does not suffer from segmentation errors. Gated recurrent cells allow our model to choose the most relevant characters and words from a sentence for better NER results. Experiments on various datasets show that lattice LSTM outperforms both word-based and character-based LSTM baselines, achieving the best results.
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